Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATAAAATAGAAACATAACTAGTTAACGAAGTTACATCTAGTGGTTACTATTTCGTGGTCCGATCTTATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGGTACCCAGTCTTATCCCTATACTATAGACCCTTTAAGTTGTATCTCAAATATTACTCCATGTATGTCTCTACATATTGTTTCAGACTCATCAAACAACTTAGGATGTTAGTTTATTGGATTTAAGTTATTAAGAGATGATTCTTGCTAGTGGCACATGGCATAAGTCTCTACGAGAATTAGTGTTTAAAGACACAAGATGAGCAGAAAAAAACGTAGAGGATTCTATATGATGCGACTACGGGTTCTATCATGTATGCCATGCTATCTCACTTAACCAGATGTATCAAACATGCTGAGTTTGACTAGTAGATATCGATCAGATCAAGGTGAAGCACACTAGACAGCAGTGAAAAATATCCTTAAGTACTTAAGAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTAATTATTCTCAATTCTACTACATATGCAAAGTACCTACAAGTGATAATGTAGCAGATCCTTTGACTAAAACTCTTCCTCAATCAAAACATGATTATTATACTTGGAGCATGAGTATTAGATACTTAGCTAATTATATAGAGAGCAAGTGGGAGAACTGTTGGTTTTTTTATTGTGCTCTATAATAATTTTATGGTGTTGGAATTTGTGTCCTGGAACTCGTACTTTGTTATTTGATTCAATAAAATTTATTGTTAAATGCTATAATCTTAAAAACCAATAAATTTAGGTCCCGAGGCTATTTTATTGAGTTTGTCAAATACACTTGAATTTTATGTTAAGACATAAACATGGATTAAGTTCAAGTTAATAGCCTAAATAGTCTATAGTGTATGAATAAGGATGGGTGCCTTATTCAGAATAAACACTATGGATGCGGCCCACTCCGTAGTTAGTACAAACGATGTAATCTTGTATCGTTCATGTAGAGATATGAGAGTAGAGGTGTCCTATGTAAATGGTTTACATAAGACTGGAACCACGAAGTAGTCACTTTTAGTTATAACACCGTAAACTATAAACTAACTATTTCAATTATGATGACCTAGGTAACTTGATCTTAATCATGAGCTAACTATGAACTTCTGTTCATTCGGTAGTATCCTTAAATCTGCATAGGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTAAGATCGAGTGGATAGCTAGGGACATAGGGTGCAAGATGGAATTCACTCATACCCACTTCTGGGATAGTAGATAGGTTGTTCCCTTAAGGACTGAATCCAAGTCTTGAACAAGGGGCCCCACCTTCTCATTGACCCGAGAAGGATTCTAGTTTATAGGTTGGACCTTAAACCAATTGTTCAATAGTGGATCAGTGGGTCTTAAGGAGCAAGATATAATCTTGGGGGTAAAAGGGTATTTTGACCCATCCAAGATTACGAACAACCTGTGAAGGATCGACTTACCTATTATGGTTATATTAGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA
mRNA sequence
CTTATAAAATAGAAACATAACTAGTTAACGAAGTTACATCTAGTGGTTACTATTTCGTGGTCCGATCTTATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA
Coding sequence (CDS)
ATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA
Protein sequence
MQTHCIGYPHSHITYTNALDHCVCIKYKVIHIHSVTMIRIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAAQHRWSNKPPISGVDINISIVRGVQLRVFSGMTLWLTNVD
Homology
BLAST of MELO3C032723 vs. NCBI nr
Match:
KAG8649245.1 (hypothetical protein MANES_08G076375v8 [Manihot esculenta])
HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
R KDAFLVYGGLE+ELVV+G+TDASFQ++KDD+RS SG+VF LNGG SWKSSKQ
Sbjct: 165 RTKDAFLVYGGLEDELVVSGYTDASFQTDKDDFRSQSGFVFNLNGGVVSWKSSKQ 219
BLAST of MELO3C032723 vs. NCBI nr
Match:
CAD40526.2 (OSJNBa0023J03.14 [Oryza sativa Japonica Group] >CAE02400.1 OSJNBa0024J22.4 [Oryza sativa Japonica Group] >CAH66059.1 OSIGBa0125J07.8 [Oryza sativa] >CAH66155.1 OSIGBa0113B06.1 [Oryza sativa])
HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583
BLAST of MELO3C032723 vs. NCBI nr
Match:
WP_219728013.1 (Ty1/Copia family ribonuclease HI, partial [Pseudomonas asplenii])
HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
R K+ FL+YGG E ELVVNG+TDASFQ++ DD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 28 RTKEMFLIYGGQEGELVVNGYTDASFQTDVDDFRSQSGFVFCLNGGAVSWKSSKQ 82
BLAST of MELO3C032723 vs. NCBI nr
Match:
WP_219728474.1 (Ty1/Copia family ribonuclease HI, partial [Pseudomonas protegens])
HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
R K+ FL+YGG E ELVVNG+TD SFQ++ DD+RS SG+VFCLNGGA SWKSSKQ AA
Sbjct: 64 RTKEMFLIYGGQEGELVVNGYTDGSFQTDVDDFRSQSGFVFCLNGGAVSWKSSKQDTAA 122
BLAST of MELO3C032723 vs. NCBI nr
Match:
ADB85429.1 (putative retrotransposon protein [Phyllostachys edulis])
HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
R KDAFL+YGG + ELVVNG+TDASFQ++KDDYRS SG+VF LNGGA SWKSSKQ A
Sbjct: 1139 RTKDAFLIYGG-DEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVA 1196
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match:
A0A0A9CW99 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
R KD FLVYGG+E ELVVNG+TDASFQ++KDD++S SGYVFCLNGGA SWKSSKQ A
Sbjct: 76 RTKDMFLVYGGVE-ELVVNGYTDASFQTDKDDFKSQSGYVFCLNGGAVSWKSSKQETVA 133
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match:
Q7X7F2 (OSJNBa0023J03.14 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0023J03.14 PE=4 SV=2)
HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match:
Q01M60 (OSIGBa0113B06.1 protein OS=Oryza sativa OX=4530 GN=OSIGBa0113B06.1 PE=4 SV=1)
HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match:
O23864 (Polyprotein OS=Oryza australiensis OX=4532 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
R KD FLVYGG E +LVV+G+TDASFQ++KDDYRS SG+VFCLNGGA SWKSSKQ
Sbjct: 1143 RTKDMFLVYGG-EEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQ 1196
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match:
D3IVT9 (Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0
Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
R KDAFL+YGG + ELVVNG+TDASFQ++KDDYRS SG+VF LNGGA SWKSSKQ A
Sbjct: 1139 RTKDAFLIYGG-DEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVA 1196
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG8649245.1 | 4.1e-15 | 78.18 | hypothetical protein MANES_08G076375v8 [Manihot esculenta] | [more] |
| CAD40526.2 | 9.2e-15 | 80.00 | OSJNBa0023J03.14 [Oryza sativa Japonica Group] >CAE02400.1 OSJNBa0024J22.4 [Oryz... | [more] |
| WP_219728013.1 | 9.2e-15 | 74.55 | Ty1/Copia family ribonuclease HI, partial [Pseudomonas asplenii] | [more] |
| WP_219728474.1 | 9.2e-15 | 71.19 | Ty1/Copia family ribonuclease HI, partial [Pseudomonas protegens] | [more] |
| ADB85429.1 | 1.6e-14 | 74.58 | putative retrotransposon protein [Phyllostachys edulis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A9CW99 | 1.2e-15 | 76.27 | Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1 | [more] |
| Q7X7F2 | 4.5e-15 | 80.00 | OSJNBa0023J03.14 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0023J... | [more] |
| Q01M60 | 4.5e-15 | 80.00 | OSIGBa0113B06.1 protein OS=Oryza sativa OX=4530 GN=OSIGBa0113B06.1 PE=4 SV=1 | [more] |
| O23864 | 7.6e-15 | 78.18 | Polyprotein OS=Oryza australiensis OX=4532 PE=4 SV=1 | [more] |
| D3IVT9 | 7.6e-15 | 74.58 | Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
