MELO3C032723 (gene) Melon (DHL92) v4

Overview
NameMELO3C032723
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr07: 13991543 .. 13993379 (-)
RNA-Seq ExpressionMELO3C032723
SyntenyMELO3C032723
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTATAAAATAGAAACATAACTAGTTAACGAAGTTACATCTAGTGGTTACTATTTCGTGGTCCGATCTTATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGGTACCCAGTCTTATCCCTATACTATAGACCCTTTAAGTTGTATCTCAAATATTACTCCATGTATGTCTCTACATATTGTTTCAGACTCATCAAACAACTTAGGATGTTAGTTTATTGGATTTAAGTTATTAAGAGATGATTCTTGCTAGTGGCACATGGCATAAGTCTCTACGAGAATTAGTGTTTAAAGACACAAGATGAGCAGAAAAAAACGTAGAGGATTCTATATGATGCGACTACGGGTTCTATCATGTATGCCATGCTATCTCACTTAACCAGATGTATCAAACATGCTGAGTTTGACTAGTAGATATCGATCAGATCAAGGTGAAGCACACTAGACAGCAGTGAAAAATATCCTTAAGTACTTAAGAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTAATTATTCTCAATTCTACTACATATGCAAAGTACCTACAAGTGATAATGTAGCAGATCCTTTGACTAAAACTCTTCCTCAATCAAAACATGATTATTATACTTGGAGCATGAGTATTAGATACTTAGCTAATTATATAGAGAGCAAGTGGGAGAACTGTTGGTTTTTTTATTGTGCTCTATAATAATTTTATGGTGTTGGAATTTGTGTCCTGGAACTCGTACTTTGTTATTTGATTCAATAAAATTTATTGTTAAATGCTATAATCTTAAAAACCAATAAATTTAGGTCCCGAGGCTATTTTATTGAGTTTGTCAAATACACTTGAATTTTATGTTAAGACATAAACATGGATTAAGTTCAAGTTAATAGCCTAAATAGTCTATAGTGTATGAATAAGGATGGGTGCCTTATTCAGAATAAACACTATGGATGCGGCCCACTCCGTAGTTAGTACAAACGATGTAATCTTGTATCGTTCATGTAGAGATATGAGAGTAGAGGTGTCCTATGTAAATGGTTTACATAAGACTGGAACCACGAAGTAGTCACTTTTAGTTATAACACCGTAAACTATAAACTAACTATTTCAATTATGATGACCTAGGTAACTTGATCTTAATCATGAGCTAACTATGAACTTCTGTTCATTCGGTAGTATCCTTAAATCTGCATAGGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTAAGATCGAGTGGATAGCTAGGGACATAGGGTGCAAGATGGAATTCACTCATACCCACTTCTGGGATAGTAGATAGGTTGTTCCCTTAAGGACTGAATCCAAGTCTTGAACAAGGGGCCCCACCTTCTCATTGACCCGAGAAGGATTCTAGTTTATAGGTTGGACCTTAAACCAATTGTTCAATAGTGGATCAGTGGGTCTTAAGGAGCAAGATATAATCTTGGGGGTAAAAGGGTATTTTGACCCATCCAAGATTACGAACAACCTGTGAAGGATCGACTTACCTATTATGGTTATATTAGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA

mRNA sequence

CTTATAAAATAGAAACATAACTAGTTAACGAAGTTACATCTAGTGGTTACTATTTCGTGGTCCGATCTTATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA

Coding sequence (CDS)

ATGCAAACTCATTGCATAGGATATCCTCACTCGCATATCACCTACACGAATGCATTGGATCATTGCGTCTGTATCAAATACAAAGTGATTCATATCCATAGTGTTACCATGATAAGAATTAAGGATGCATTCTTGGTATATGGAGGACTTGAAAATGAGCTAGTTGTAAATGGTTTCACAGATGCAAGTTTTCAGTCTAACAAAGATGACTATAGATCACATTCAGGATATGTGTTTTGTTTGAATGGAGGTGCTGGTAGTTGGAAGAGTTCGAAACAAGTGAGGGCAGCTCAACATCGCTGGTCCAATAAGCCTCCCATTTCAGGGGTGGACATAAATATATCTATAGTGAGGGGAGTGCAACTAAGAGTCTTTAGTGGAATGACTCTTTGGTTAACGAATGTTGATTAA

Protein sequence

MQTHCIGYPHSHITYTNALDHCVCIKYKVIHIHSVTMIRIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAAQHRWSNKPPISGVDINISIVRGVQLRVFSGMTLWLTNVD
Homology
[Close]
BLAST of MELO3C032723 vs. NCBI nr
Match: KAG8649245.1 (hypothetical protein MANES_08G076375v8 [Manihot esculenta])

HSP 1 Score: 92.0 bits (227), Expect = 4.1e-15
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
           R KDAFLVYGGLE+ELVV+G+TDASFQ++KDD+RS SG+VF LNGG  SWKSSKQ
Sbjct: 165 RTKDAFLVYGGLEDELVVSGYTDASFQTDKDDFRSQSGFVFNLNGGVVSWKSSKQ 219

[Close]
BLAST of MELO3C032723 vs. NCBI nr
Match: CAD40526.2 (OSJNBa0023J03.14 [Oryza sativa Japonica Group] >CAE02400.1 OSJNBa0024J22.4 [Oryza sativa Japonica Group] >CAH66059.1 OSIGBa0125J07.8 [Oryza sativa] >CAH66155.1 OSIGBa0113B06.1 [Oryza sativa])

HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
           R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583

[Close]
BLAST of MELO3C032723 vs. NCBI nr
Match: WP_219728013.1 (Ty1/Copia family ribonuclease HI, partial [Pseudomonas asplenii])

HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 39 RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
          R K+ FL+YGG E ELVVNG+TDASFQ++ DD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 28 RTKEMFLIYGGQEGELVVNGYTDASFQTDVDDFRSQSGFVFCLNGGAVSWKSSKQ 82

[Close]
BLAST of MELO3C032723 vs. NCBI nr
Match: WP_219728474.1 (Ty1/Copia family ribonuclease HI, partial [Pseudomonas protegens])

HSP 1 Score: 90.9 bits (224), Expect = 9.2e-15
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 0 

Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
           R K+ FL+YGG E ELVVNG+TD SFQ++ DD+RS SG+VFCLNGGA SWKSSKQ  AA
Sbjct: 64  RTKEMFLIYGGQEGELVVNGYTDGSFQTDVDDFRSQSGFVFCLNGGAVSWKSSKQDTAA 122

[Close]
BLAST of MELO3C032723 vs. NCBI nr
Match: ADB85429.1 (putative retrotransposon protein [Phyllostachys edulis])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 39   RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
            R KDAFL+YGG + ELVVNG+TDASFQ++KDDYRS SG+VF LNGGA SWKSSKQ   A
Sbjct: 1139 RTKDAFLIYGG-DEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVA 1196

[Close]
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: A0A0A9CW99 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-15
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
           R KD FLVYGG+E ELVVNG+TDASFQ++KDD++S SGYVFCLNGGA SWKSSKQ   A
Sbjct: 76  RTKDMFLVYGGVE-ELVVNGYTDASFQTDKDDFKSQSGYVFCLNGGAVSWKSSKQETVA 133

[Close]
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: Q7X7F2 (OSJNBa0023J03.14 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0023J03.14 PE=4 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
           R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583

[Close]
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: Q01M60 (OSIGBa0113B06.1 protein OS=Oryza sativa OX=4530 GN=OSIGBa0113B06.1 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 4.5e-15
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 39  RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
           R KD FLVYGG E ELVVNG+TDASFQ++KDD+RS SG+VFCLNGGA SWKSSKQ
Sbjct: 530 RTKDMFLVYGGQE-ELVVNGYTDASFQTDKDDFRSQSGFVFCLNGGAVSWKSSKQ 583

[Close]
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: O23864 (Polyprotein OS=Oryza australiensis OX=4532 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 43/55 (78.18%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 39   RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQ 94
            R KD FLVYGG E +LVV+G+TDASFQ++KDDYRS SG+VFCLNGGA SWKSSKQ
Sbjct: 1143 RTKDMFLVYGG-EEDLVVSGYTDASFQTDKDDYRSQSGFVFCLNGGAVSWKSSKQ 1196

[Close]
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match: D3IVT9 (Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 0 

Query: 39   RIKDAFLVYGGLENELVVNGFTDASFQSNKDDYRSHSGYVFCLNGGAGSWKSSKQVRAA 98
            R KDAFL+YGG + ELVVNG+TDASFQ++KDDYRS SG+VF LNGGA SWKSSKQ   A
Sbjct: 1139 RTKDAFLIYGG-DEELVVNGYTDASFQTDKDDYRSQSGFVFILNGGAVSWKSSKQETVA 1196

The following BLAST results are available for this feature:
BLAST of MELO3C032723 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG8649245.14.1e-1578.18hypothetical protein MANES_08G076375v8 [Manihot esculenta][more]
CAD40526.29.2e-1580.00OSJNBa0023J03.14 [Oryza sativa Japonica Group] >CAE02400.1 OSJNBa0024J22.4 [Oryz... [more]
WP_219728013.19.2e-1574.55Ty1/Copia family ribonuclease HI, partial [Pseudomonas asplenii][more]
WP_219728474.19.2e-1571.19Ty1/Copia family ribonuclease HI, partial [Pseudomonas protegens][more]
ADB85429.11.6e-1474.58putative retrotransposon protein [Phyllostachys edulis][more]
BLAST of MELO3C032723 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A9CW991.2e-1576.27Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
Q7X7F24.5e-1580.00OSJNBa0023J03.14 protein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0023J... [more]
Q01M604.5e-1580.00OSIGBa0113B06.1 protein OS=Oryza sativa OX=4530 GN=OSIGBa0113B06.1 PE=4 SV=1[more]
O238647.6e-1578.18Polyprotein OS=Oryza australiensis OX=4532 PE=4 SV=1[more]
D3IVT97.6e-1574.58Putative retrotransposon protein OS=Phyllostachys edulis OX=38705 PE=4 SV=1[more]
BLAST of MELO3C032723 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C032723.1MELO3C032723.1mRNA