MELO3C032408 (gene) Melon (DHL92) v4

Overview


Name	MELO3C032408
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein ROOT HAIR DEFECTIVE 3
Location	chr07: 18345758 .. 18346768 (-)
RNA-Seq Expression	MELO3C032408
Synteny	MELO3C032408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATATGGTTGGCTTGATGCGCCGACATCGAGCCTTGTACACTTATGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGTGCATTGCTATGCCCTTTTTGGTTTTCATGTGTTTCTTTTGCTTGTACATTCATTTATTTTTGCTTTTTTATTATTTATTTATTTTTTAATTTTCCACAAATGTGTTTGTCAATGTTTTGAATTCAGTATATCATTGCATGCTTCTTTTTGCAGATACACGTATGTGTATGTATATCTGTATGTGTGTGTATGTAAGGATATGTGTGTGTGTGTGTATGTATGTATGCTTATGTATGTATTTATGCGAACATACTTATATTTTTGTATCATATCAAGCTAAGATGTATACTTTGGTTTTTTCTTAATTTGCTTTTGTCACATTCTTTTTAAGGACGACACTGCATTTGAGAAGCAAAGTACCTCTTTGCGCTTGCCGTGTAAGATATAGTGCTAATAAATATGTGAGTGCCATTAGTTTTGTTTTTCAAATATTTATTTTATCTTGTAACATGTGTTTCAGTTTGATTTTCTTCTAAATTTATTGTTTCTACACTGTCTTGTTTAAGAAGTTGTTATAATTTAATTTAGGTGGTGTCACGATATTGGCCGTGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTATTTCAGGTATTCCCTTTAATCTAGTTGGGGGTCATGGTGTATCTTTTATAGTATTAATTTAATAAATTTTAGTTGTTGTTGTATGCAGGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGGTCTGTTAATATTTACTGGGTAGTTTATATCTTGAGCTGTTGTAGAAAAACCATATGTTGTAAGCTTTTAATTTTCTAATTTTCTTTATTGCTTTTGTTAATTTTTTTGTATATAGATACCATTGGAAAATTTAGAGCCTGTTCTTAGAGGATGTACATAAGGTAAATTATTGGTGCTCTTAA

mRNA sequence

GTATATGGTTGGCTTGATGCGCCGACATCGAGCCTTGTACACTTATGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGGAGAGGACGACACTGCATTTGAGAAGCAAAGTACCTCTTTGCGCTTGCCGTGTAAGATATAGTGCTAATAAATATGTGGTGTCACGATATTGGCCGTGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGATACCATTGGAAAATTTAGAGCCTGTTCTTAGAGGATGTACATAAGGTAAATTATTGGTGCTCTTAA

Coding sequence (CDS)

ATGTGGTGTCACGATATTGGCCGTGAGCAGGCTGCAAATAAGCCTCTCCTCAAAACTGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGATACCATTGGAAAATTTAGAGCCTGTTCTTAGAGGATGTACATAA

Protein sequence

MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLRGCT

Homology

[Close]

BLAST of MELO3C032408 vs. NCBI nr
Match: ONM40609.1 (Protein ROOT HAIR DEFECTIVE 3 [Zea mays])

HSP 1 Score: 103.2 bits (256), Expect = 7.2e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 153 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 204

[Close]

BLAST of MELO3C032408 vs. NCBI nr
Match: AQK96218.1 (Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >PWZ11121.1 hypothetical protein Zm00014a_034991 [Zea mays] >PWZ11122.1 Protein ROOT HAIR DEFECTIVE 3 [Zea mays])

HSP 1 Score: 103.2 bits (256), Expect = 7.2e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 129 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 180

[Close]

BLAST of MELO3C032408 vs. NCBI nr
Match: PWZ33891.1 (Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >PWZ33892.1 hypothetical protein Zm00014a_042861 [Zea mays])

HSP 1 Score: 103.2 bits (256), Expect = 7.2e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 153 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 204

[Close]

BLAST of MELO3C032408 vs. NCBI nr
Match: ONM40596.1 (Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >ONM40602.1 Protein ROOT HAIR DEFECTIVE 3 [Zea mays])

HSP 1 Score: 103.2 bits (256), Expect = 7.2e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 138 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 189

[Close]

BLAST of MELO3C032408 vs. NCBI nr
Match: ONM40608.1 (Protein ROOT HAIR DEFECTIVE 3 [Zea mays])

HSP 1 Score: 103.2 bits (256), Expect = 7.2e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 138 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 189

[Close]

BLAST of MELO3C032408 vs. ExPASy Swiss-Prot
Match: P93042 (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.7e-21
Identity = 50/55 (90.91%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VMMRLFSP KTTLMFVIRDKTR PLENLEPVLR
Sbjct: 129 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 183

[Close]

BLAST of MELO3C032408 vs. ExPASy Swiss-Prot
Match: Q9SSN0 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 1.8e-20
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VMMRLFSP KTT++FVIRDKTR PLENLEPVLR
Sbjct: 134 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLR 188

[Close]

BLAST of MELO3C032408 vs. ExPASy Swiss-Prot
Match: Q2QMH2 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-20
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VMMRLFSP KTTL+FVIRDKTR PLE+LEPVLR
Sbjct: 132 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTRTPLEHLEPVLR 186

[Close]

BLAST of MELO3C032408 vs. ExPASy Swiss-Prot
Match: Q0JLS6 (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.9e-20
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VMMRLFSP KTTL+FVIRDK++ PLENLEP+LR
Sbjct: 129 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKSKTPLENLEPILR 183

[Close]

BLAST of MELO3C032408 vs. ExPASy Swiss-Prot
Match: Q9FKE9 (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-17
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VM+RLFSP KTTL+FVIRDKT+ P+E LE  LR
Sbjct: 132 MWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALR 186

[Close]

BLAST of MELO3C032408 vs. ExPASy TrEMBL
Match: A0A1D6NK19 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d044271 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 138 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 189

[Close]

BLAST of MELO3C032408 vs. ExPASy TrEMBL
Match: A0A3L6FNJ4 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=Zm00014a_042861 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 153 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 204

[Close]

BLAST of MELO3C032408 vs. ExPASy TrEMBL
Match: A0A3L6DU23 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=Zm00014a_034991 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 129 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 180

[Close]

BLAST of MELO3C032408 vs. ExPASy TrEMBL
Match: A0A1D6NK21 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d044271 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 138 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 189

[Close]

BLAST of MELO3C032408 vs. ExPASy TrEMBL
Match: A0A1D6NK28 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d044271 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKTVMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKTVMMRLFSP KTTL+FVIRDK+R PLENLEP+LR
Sbjct: 153 MWCHDIGREQAANKPLLKTVMMRLFSPRKTTLLFVIRDKSRTPLENLEPILR 204

[Close]

BLAST of MELO3C032408 vs. TAIR 10
Match: AT3G13870.2 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-22
Identity = 50/55 (90.91%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VMMRLFSP KTTLMFVIRDKTR PLENLEPVLR
Sbjct: 65  MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 119

[Close]

BLAST of MELO3C032408 vs. TAIR 10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-22
Identity = 50/55 (90.91%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VMMRLFSP KTTLMFVIRDKTR PLENLEPVLR
Sbjct: 129 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLR 183

[Close]

BLAST of MELO3C032408 vs. TAIR 10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-21
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VMMRLFSP KTT++FVIRDKTR PLENLEPVLR
Sbjct: 134 MWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTRTPLENLEPVLR 188

[Close]

BLAST of MELO3C032408 vs. TAIR 10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 88.2 bits (217), Expect = 2.2e-18
Identity = 43/55 (78.18%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 1   MWCHDIGREQAANKPLLKT---VMMRLFSPHKTTLMFVIRDKTRIPLENLEPVLR 53
           MWCHDIGREQAANKPLLKT   VM+RLFSP KTTL+FVIRDKT+ P+E LE  LR
Sbjct: 132 MWCHDIGREQAANKPLLKTVFQVMLRLFSPRKTTLLFVIRDKTKTPIELLERALR 186

The following BLAST results are available for this feature:

BLAST of MELO3C032408 vs. NCBI nr


Match Name	E-value	Identity	Description
ONM40609.1	7.2e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 [Zea mays]	[more]
AQK96218.1	7.2e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >PWZ11121.1 hypothetical protein Zm0001...	[more]
PWZ33891.1	7.2e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >PWZ33892.1 hypothetical protein Zm0001...	[more]
ONM40596.1	7.2e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 [Zea mays] >ONM40602.1 Protein ROOT HAIR DEFECTIVE...	[more]
ONM40608.1	7.2e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 [Zea mays]	[more]

BLAST of MELO3C032408 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93042	4.7e-21	90.91	Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1	[more]
Q9SSN0	1.8e-20	87.27	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7...	[more]
Q2QMH2	4.0e-20	87.27	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q0JLS6	8.9e-20	83.64	Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P...	[more]
Q9FKE9	3.2e-17	78.18	Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4...	[more]

BLAST of MELO3C032408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1D6NK19	3.5e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d04...	[more]
A0A3L6FNJ4	3.5e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=Zm00014a_042861 PE=...	[more]
A0A3L6DU23	3.5e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=Zm00014a_034991 PE=...	[more]
A0A1D6NK21	3.5e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d04...	[more]
A0A1D6NK28	3.5e-19	90.38	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d04...	[more]

BLAST of MELO3C032408 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13870.2	3.3e-22	90.91	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.1	3.3e-22	90.91	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT1G72960.1	1.3e-21	87.27	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT5G45160.1	2.2e-18	78.18	Root hair defective 3 GTP-binding protein (RHD3)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008803	RHD3/Sey1	PFAM	PF05879	RHD3	coord: 1..52 e-value: 5.0E-21 score: 74.6
IPR008803	RHD3/Sey1	PANTHER	PTHR45923	PROTEIN SEY1	coord: 1..52
None	No IPR available	PANTHER	PTHR45923:SF15	PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032408.1	MELO3C032408.1	mRNA