MELO3C031768 (gene) Melon (DHL92) v4

Overview
NameMELO3C031768
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptiontraB domain-containing protein
Locationchr06: 6841483 .. 6841766 (+)
RNA-Seq ExpressionMELO3C031768
SyntenyMELO3C031768
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCTTGCATGGTCTCTGAAGCGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTCGGGGTGATCGGAAGAGGCCATATGAATGGTGTCATTTACGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGCAGGTAAGAAAGCTGGAGAAGGTAATTCCAATGGCTTTGTTAGCAGTCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATCTTGTGGGTTTTATATGAACAATTAAAACAACTACACATAATACCTTAGCAAGGTAG

mRNA sequence

TACCTTGCATGGTCTCTGAAGCGTAGCAAGGCGGTGAACAAGAGCAAGAGGGTGGTCGGGGTGATCGGAAGAGGCCATATGAATGGTGTCATTTACGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGCAGGTAAGAAAGCTGGAGAAGGTAATTCCAATGGCTTTGTTAGCAGTCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATCTTGTGGGTTTTATATGAACAATTAAAACAACTACACATAATACCTTAGCAAGGTAG

Coding sequence (CDS)

ATGAATGGTGTCATTTACGCAATAACATCGGACCAAGGAAACTTACGATTTCGAGACCTTGCAGGTAAGAAAGCTGGAGAAGGTAATTCCAATGGCTTTGTTAGCAGTCTCCTGAAAAGCTTGGTTAGAGACACTATAATTGGTGTTATCTTGTGGGTTTTATATGAACAATTAAAACAACTACACATAATACCTTAG

Protein sequence

MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQLHIIP
Homology
[Close]
BLAST of MELO3C031768 vs. NCBI nr
Match: XP_008439166.1 (PREDICTED: traB domain-containing protein [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ
Sbjct: 316 MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 375

Query: 61  LHIIP 66
           LHIIP
Sbjct: 376 LHIIP 380

[Close]
BLAST of MELO3C031768 vs. NCBI nr
Match: XP_011651134.1 (traB domain-containing protein isoform X2 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLK LVRDTIIGVI+WVLYEQLKQ
Sbjct: 185 MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLKQ 244

Query: 61  LHIIP 66
           LHIIP
Sbjct: 245 LHIIP 249

[Close]
BLAST of MELO3C031768 vs. NCBI nr
Match: XP_004140793.1 (traB domain-containing protein isoform X1 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 7.2e-26
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLK LVRDTIIGVI+WVLYEQLKQ
Sbjct: 338 MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLKQ 397

Query: 61  LHIIP 66
           LHIIP
Sbjct: 398 LHIIP 402

[Close]
BLAST of MELO3C031768 vs. NCBI nr
Match: XP_038876484.1 (traB domain-containing protein isoform X1 [Benincasa hispida])

HSP 1 Score: 117.9 bits (294), Expect = 3.4e-23
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGVIYA+ SDQGNLRFRDLAGKKAGE NSNGFVSSL++SLVRDTIIGV+LW+LYEQLKQ
Sbjct: 341 MNGVIYALISDQGNLRFRDLAGKKAGESNSNGFVSSLMRSLVRDTIIGVVLWILYEQLKQ 400

Query: 61  LHII 65
           LHI+
Sbjct: 401 LHIV 404

[Close]
BLAST of MELO3C031768 vs. NCBI nr
Match: XP_038876495.1 (traB domain-containing protein isoform X3 [Benincasa hispida])

HSP 1 Score: 117.9 bits (294), Expect = 3.4e-23
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGVIYA+ SDQGNLRFRDLAGKKAGE NSNGFVSSL++SLVRDTIIGV+LW+LYEQLKQ
Sbjct: 316 MNGVIYALISDQGNLRFRDLAGKKAGESNSNGFVSSLMRSLVRDTIIGVVLWILYEQLKQ 375

Query: 61  LHII 65
           LHI+
Sbjct: 376 LHIV 379

[Close]
BLAST of MELO3C031768 vs. ExPASy TrEMBL
Match: A0A1S3AXQ2 (traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103484044 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.4e-27
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ
Sbjct: 316 MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 375

Query: 61  LHIIP 66
           LHIIP
Sbjct: 376 LHIIP 380

[Close]
BLAST of MELO3C031768 vs. ExPASy TrEMBL
Match: A0A0A0L5T2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180280 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.5e-26
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLK LVRDTIIGVI+WVLYEQLKQ
Sbjct: 220 MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKDLVRDTIIGVIVWVLYEQLKQ 279

Query: 61  LHIIP 66
           LHIIP
Sbjct: 280 LHIIP 284

[Close]
BLAST of MELO3C031768 vs. ExPASy TrEMBL
Match: A0A6J1CHI0 (traB domain-containing protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011476 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 52/65 (80.00%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGV+YAI SDQGNLRFRDLAGKKAG+  SNGFVS L++SLVRDT+IGV+LWV+YEQLKQ
Sbjct: 316 MNGVVYAIISDQGNLRFRDLAGKKAGDQGSNGFVSGLVQSLVRDTVIGVVLWVVYEQLKQ 375

Query: 61  LHIIP 66
           LH++P
Sbjct: 376 LHVVP 380

[Close]
BLAST of MELO3C031768 vs. ExPASy TrEMBL
Match: A0A6J1CGK3 (traB domain-containing protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011476 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.0e-22
Identity = 52/65 (80.00%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGV+YAI SDQGNLRFRDLAGKKAG+  SNGFVS L++SLVRDT+IGV+LWV+YEQLKQ
Sbjct: 318 MNGVVYAIISDQGNLRFRDLAGKKAGDQGSNGFVSGLVQSLVRDTVIGVVLWVVYEQLKQ 377

Query: 61  LHIIP 66
           LH++P
Sbjct: 378 LHVVP 382

[Close]
BLAST of MELO3C031768 vs. ExPASy TrEMBL
Match: A0A6J1HYE5 (traB domain-containing protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111467392 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21
Identity = 55/65 (84.62%), Postives = 61/65 (93.85%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGKKAGEGNSNGFVSSLLKSLVRDTIIGVILWVLYEQLKQ 60
           MNGVIYAI SDQGNLRFRD+AGK+AGE  SNGFVSSLL+SLVRDTIIGV+ WVLYEQLKQ
Sbjct: 185 MNGVIYAIISDQGNLRFRDVAGKRAGE-TSNGFVSSLLQSLVRDTIIGVLFWVLYEQLKQ 244

Query: 61  LHIIP 66
           LH++P
Sbjct: 245 LHLVP 248

[Close]
BLAST of MELO3C031768 vs. TAIR 10
Match: AT5G52030.2 (TraB family protein )

HSP 1 Score: 73.2 bits (178), Expect = 8.8e-14
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGK----KAGEG-NSNGFVSSLLKSLVRDTIIGVILWVLY 58
           MNGVIYA+ SD G+LRFRDL G+      G G  SNG++  +LKS VRDTIIG +LW LY
Sbjct: 332 MNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIGFLLWELY 391

[Close]
BLAST of MELO3C031768 vs. TAIR 10
Match: AT5G52030.1 (TraB family protein )

HSP 1 Score: 73.2 bits (178), Expect = 8.8e-14
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0 

Query: 1   MNGVIYAITSDQGNLRFRDLAGK----KAGEG-NSNGFVSSLLKSLVRDTIIGVILWVLY 58
           MNGVIYA+ SD G+LRFRDL G+      G G  SNG++  +LKS VRDTIIG +LW LY
Sbjct: 188 MNGVIYALVSDSGDLRFRDLVGRGDSYNGGTGTTSNGWIQKVLKSFVRDTIIGFLLWELY 247

The following BLAST results are available for this feature:
BLAST of MELO3C031768 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439166.11.1e-26100.00PREDICTED: traB domain-containing protein [Cucumis melo][more]
XP_011651134.17.2e-2696.92traB domain-containing protein isoform X2 [Cucumis sativus][more]
XP_004140793.17.2e-2696.92traB domain-containing protein isoform X1 [Cucumis sativus][more]
XP_038876484.13.4e-2387.50traB domain-containing protein isoform X1 [Benincasa hispida][more]
XP_038876495.13.4e-2387.50traB domain-containing protein isoform X3 [Benincasa hispida][more]
BLAST of MELO3C031768 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031768 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3AXQ25.4e-27100.00traB domain-containing protein OS=Cucumis melo OX=3656 GN=LOC103484044 PE=4 SV=1[more]
A0A0A0L5T23.5e-2696.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G180280 PE=4 SV=1[more]
A0A6J1CHI04.0e-2280.00traB domain-containing protein isoform X2 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1CGK34.0e-2280.00traB domain-containing protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A6J1HYE52.6e-2184.62traB domain-containing protein isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
BLAST of MELO3C031768 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G52030.28.8e-1461.29TraB family protein [more]
AT5G52030.18.8e-1461.29TraB family protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031768.1MELO3C031768.1mRNA