MELO3C031674.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C031674.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionGlycine-rich cell wall structural protein 1.0-like
Locationchr06: 4049371 .. 4049829 (-)
RNA-Seq ExpressionMELO3C031674.jh1
SyntenyMELO3C031674.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGTCGGAGGAACAAAATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGCGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACCCGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

mRNA sequence

ATGTACGTCGGAGGAACAAAATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGCGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACCCGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

Coding sequence (CDS)

ATGTACGTCGGAGGAACAAAATCAGTTGGAGACGGCGACGTCAATATCTCTGGACCAAAAGGTCTAGGTGGACCAGGAGGTCTAGGTGGCATCTCCTCCGGTGGCGACGGCGGTAAAATTTCTGGTCCTGGTACTGGCGAACCAGGCCATGGTGGCTCTATATCTGGAGGCTTACGGGGTGGTACCGGTACATCGATTCCCGGAGGAGACGGCGACGGAGGCTTCGGAAACTCTGGTCCTGGCGGCCGGGGATCAGGAAAATCCGGCTCCGGAGTTATCGACGGAAGCTCCGACGGAGTGCTTGGGTCAATCTCCGGAGGAGGCGAAAATTGTGGAATTTCGAGGGGTAAAGAAGGCGGTGGAACCGGGCGGCTTTTGGGAAACTCCGGCGAGTCACCCGAAAGCATAGAGCGCGAGAGAGACGTGGAGTATTCATTGAAGGAGAGGAATTGGGAATGA

Protein sequence

MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRGGTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGGGTGRLLGNSGESPESIERERDVEYSLKERNWE
Homology
[Close]
BLAST of MELO3C031674.jh1 vs. NCBI nr
Match: KAA0049320.1 (glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (696), Expect = 1.43e-91
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152
           GTGRLLGNSGESPESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152

[Close]
BLAST of MELO3C031674.jh1 vs. NCBI nr
Match: XP_016898954.1 (PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo])

HSP 1 Score: 268 bits (684), Expect = 9.67e-90
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGT+SVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152
           GTGRLLGNSGES ESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 152

[Close]
BLAST of MELO3C031674.jh1 vs. NCBI nr
Match: XP_011652754.1 (glycine-rich cell wall structural protein-like [Cucumis sativus])

HSP 1 Score: 222 bits (566), Expect = 8.98e-72
Identity = 132/152 (86.84%), Postives = 135/152 (88.82%), Query Frame = 0 

Query: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYV  TK  GD DVNISGPKGLGG GGLGG SSGGDGGKISG GTGEPGHGGSISGGLRG
Sbjct: 1   MYVRATKPGGDADVNISGPKGLGGLGGLGGTSSGGDGGKISGSGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           G+GTSIPGGDG+GGFGNSGPGG G G SGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GSGTSIPGGDGNGGFGNSGPGGLG-GNSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152
           GTGR+ GNSGESPES E ERD  YSLK RNWE
Sbjct: 121 GTGRISGNSGESPESRESERDAGYSLKGRNWE 151

[Close]
BLAST of MELO3C031674.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U1W0 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold171G005620 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 6.93e-92
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0 

Query: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152
           GTGRLLGNSGESPESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152

[Close]
BLAST of MELO3C031674.jh1 vs. ExPASy TrEMBL
Match: A0A1S4DSJ3 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC107990388 PE=4 SV=1)

HSP 1 Score: 268 bits (684), Expect = 4.68e-90
Identity = 150/152 (98.68%), Postives = 151/152 (99.34%), Query Frame = 0 

Query: 1   MYVGGTKSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60
           MYVGGT+SVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG
Sbjct: 1   MYVGGTRSVGDGDVNISGPKGLGGPGGLGGISSGGDGGKISGPGTGEPGHGGSISGGLRG 60

Query: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120
           GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG
Sbjct: 61  GTGTSIPGGDGDGGFGNSGPGGRGSGKSGSGVIDGSSDGVLGSISGGGENCGISRGKEGG 120

Query: 121 GTGRLLGNSGESPESIERERDVEYSLKERNWE 152
           GTGRLLGNSGES ESIERERDVEYSLKERNWE
Sbjct: 121 GTGRLLGNSGESHESIERERDVEYSLKERNWE 152

The following BLAST results are available for this feature:
BLAST of MELO3C031674.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049320.11.43e-91100.00glycine-rich cell wall structural protein 1.0-like [Cucumis melo var. makuwa][more]
XP_016898954.19.67e-9098.68PREDICTED: glycine-rich cell wall structural protein 1.0-like [Cucumis melo][more]
XP_011652754.18.98e-7286.84glycine-rich cell wall structural protein-like [Cucumis sativus][more]
BLAST of MELO3C031674.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C031674.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1W06.93e-92100.00Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... [more]
A0A1S4DSJ34.68e-9098.68glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
BLAST of MELO3C031674.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 133..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C031674.jh1.t1MELO3C031674.jh1.t1mRNA