Homology
BLAST of MELO3C031060 vs. NCBI nr
Match:
YP_009004075.1 (RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha subunit [Cucumis sativus] >Q4VZK3.1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha [Cucumis sativus] >ALF03334.1 RNA polymerase alpha subunit [Cucumis sativus var. hardwickii] >AVE15363.1 RpoA [Cucumis sativus var. sativus] >AAZ94682.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI97448.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI98777.1 RNA polymerase alpha subunit [Cucumis sativus])
HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. NCBI nr
Match:
QHB75996.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo])
HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. NCBI nr
Match:
QJF46416.1 (RNA polymerase alpha subunit [Cucumis melo])
HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 180 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 211
BLAST of MELO3C031060 vs. NCBI nr
Match:
YP_009346515.1 (RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alpha subunit [Cucumis x hytivus] >QCY72874.1 RpoA [Cucumis hystrix])
HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. NCBI nr
Match:
YP_004841815.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA polymerase alpha subunit [Cucumis melo subsp. agrestis] >ASY96605.1 RNA polymerase alpha subunit [Cucumis melo var. conomon] >ASY96692.1 RNA polymerase alpha subunit [Cucumis melo var. makuwa] >ASY96779.1 RNA polymerase alpha subunit [Cucumis melo var. momordica] >ASY96866.1 RNA polymerase alpha subunit [Cucumis melo var. dudaim] >ASY96953.1 RNA polymerase alpha subunit [Cucumis melo var. cantalupo] >ASY97127.1 RNA polymerase alpha subunit [Cucumis melo var. inodorus] >ASY97301.1 RNA polymerase alpha subunit [Cucumis melo var. flexuosus] >QRW36587.1 RNA polymerase alpha subunit [Cucumis melo])
HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match:
Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 3.1e-09
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match:
Q9BBQ4 (DNA-directed RNA polymerase subunit alpha OS=Lotus japonicus OX=34305 GN=rpoA PE=3 SV=1)
HSP 1 Score: 57.8 bits (138), Expect = 2.7e-08
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
+DAIFMP+RN +HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match:
Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)
HSP 1 Score: 57.4 bits (137), Expect = 3.5e-08
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
+DA FMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 IDATFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match:
P13911 (DNA-directed RNA polymerase subunit alpha OS=Pisum sativum OX=3888 GN=rpoA PE=3 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 7.7e-08
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
+DA+FMP+RN +HSI+SYVNGN+KQE+ FLEI
Sbjct: 171 IDAVFMPVRNANHSIHSYVNGNQKQEILFLEI 202
BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match:
Q09G14 (DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis OX=4403 GN=rpoA PE=3 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 1.0e-07
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
+DA+FMP+RN +HSI+SY NGNEKQE+ FLEI
Sbjct: 172 IDAVFMPVRNANHSIHSYANGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match:
A0A218KG62 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoA PE=3 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match:
A0A1X9Q1P4 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match:
A0A249RZB5 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoA PE=3 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match:
A0A249RXS6 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoA PE=3 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match:
A0A286NFR2 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoA PE=3 SV=1)
HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203
BLAST of MELO3C031060 vs. TAIR 10
Match:
ATCG00740.1 (RNA polymerase subunit alpha )
HSP 1 Score: 52.8 bits (125), Expect = 6.1e-08
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 0
Query: 1 MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
+DA+FMP+ N +HSI+SY NGNEKQE+ FLEI
Sbjct: 172 IDAVFMPVENANHSIHSYGNGNEKQEILFLEI 203
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
YP_009004075.1 | 2.4e-06 | 84.38 | RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha... | [more] |
QHB75996.1 | 2.4e-06 | 84.38 | RNA polymerase alpha subunit [Cucumis melo subsp. melo] | [more] |
QJF46416.1 | 2.4e-06 | 84.38 | RNA polymerase alpha subunit [Cucumis melo] | [more] |
YP_009346515.1 | 2.4e-06 | 84.38 | RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alph... | [more] |
YP_004841815.1 | 2.4e-06 | 84.38 | RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA poly... | [more] |
Match Name | E-value | Identity | Description | |
Q4VZK3 | 3.1e-09 | 84.38 | DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=... | [more] |
Q9BBQ4 | 2.7e-08 | 78.13 | DNA-directed RNA polymerase subunit alpha OS=Lotus japonicus OX=34305 GN=rpoA PE... | [more] |
Q2PMQ3 | 3.5e-08 | 78.13 | DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV... | [more] |
P13911 | 7.7e-08 | 71.88 | DNA-directed RNA polymerase subunit alpha OS=Pisum sativum OX=3888 GN=rpoA PE=3 ... | [more] |
Q09G14 | 1.0e-07 | 71.88 | DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis OX=4403 GN=rp... | [more] |
Match Name | E-value | Identity | Description | |
A0A218KG62 | 1.2e-06 | 84.38 | DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=... | [more] |
A0A1X9Q1P4 | 1.2e-06 | 84.38 | DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=... | [more] |
A0A249RZB5 | 1.2e-06 | 84.38 | DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. cantalupensis OX=... | [more] |
A0A249RXS6 | 1.2e-06 | 84.38 | DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. agrestis OX=217... | [more] |
A0A286NFR2 | 1.2e-06 | 84.38 | DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. flexuosus OX=1120... | [more] |
Match Name | E-value | Identity | Description | |
ATCG00740.1 | 6.1e-08 | 68.75 | RNA polymerase subunit alpha | [more] |