MELO3C031060 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031060
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase subunit alpha
Location	chr05: 2024328 .. 2024768 (+)
RNA-Seq Expression	MELO3C031060
Synteny	MELO3C031060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGTTAACATAATAATTGAAAGAAATTGTATAGAGAAGTAATCTGTATGGAACTCCTGATGCATCTATTTGTGTCAATGATCCTGGATGAGTAATTGCTCAAGACATTATCTTATCGGTGGAAATCATTGAGAATACACAACATATAGCAGAATCAATTAGTTTGTGTATTGAATTAAAGATCGAGAGGAATAATTGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCGTATGGATGCTATATTCATGCCTATTCGAAATGTTAGTCATAGTATTAATTCTTATGTAAATGGAAATGAAAAACAAGAGATGTTTTTTCTCGAAATATGAATCAATGGAAGTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGAATTTGACTGATTTATTTACTTCTTTTTCACATGTGAAAGAAGAAAAA

mRNA sequence

AATTGTTAACATAATAATTGAAAGAAATTGTATAGAGAAGTAATCTGTATGGAACTCCTGATGCATCTATTTGTGTCAATGATCCTGGATGAGTAATTGCTCAAGACATTATCTTATCGGTGGAAATCATTGAGAATACACAACATATAGCAGAATCAATTAGTTTGTGTATTGAATTAAAGATCGAGAGGAATAATTGCGGATATCATATACAAACGCCAAATAATTTTCAAGACGCAAGTTATCGTATGGATGCTATATTCATGCCTATTCGAAATGTTAGTCATAGTATTAATTCTTATGTAAATGGAAATGAAAAACAAGAGATGTTTTTTCTCGAAATATGAATCAATGGAAGTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGAATTTGACTGATTTATTTACTTCTTTTTCACATGTGAAAGAAGAAAAA

Coding sequence (CDS)

ATGGATGCTATATTCATGCCTATTCGAAATGTTAGTCATAGTATTAATTCTTATGTAAATGGAAATGAAAAACAAGAGATGTTTTTTCTCGAAATATGA

Protein sequence

MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI

Homology

[Close]

BLAST of MELO3C031060 vs. NCBI nr
Match: YP_009004075.1 (RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha subunit [Cucumis sativus] >Q4VZK3.1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha [Cucumis sativus] >ALF03334.1 RNA polymerase alpha subunit [Cucumis sativus var. hardwickii] >AVE15363.1 RpoA [Cucumis sativus var. sativus] >AAZ94682.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI97448.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI98777.1 RNA polymerase alpha subunit [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. NCBI nr
Match: QHB75996.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. NCBI nr
Match: QJF46416.1 (RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 180 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 211

[Close]

BLAST of MELO3C031060 vs. NCBI nr
Match: YP_009346515.1 (RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alpha subunit [Cucumis x hytivus] >QCY72874.1 RpoA [Cucumis hystrix])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. NCBI nr
Match: YP_004841815.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA polymerase alpha subunit [Cucumis melo subsp. agrestis] >ASY96605.1 RNA polymerase alpha subunit [Cucumis melo var. conomon] >ASY96692.1 RNA polymerase alpha subunit [Cucumis melo var. makuwa] >ASY96779.1 RNA polymerase alpha subunit [Cucumis melo var. momordica] >ASY96866.1 RNA polymerase alpha subunit [Cucumis melo var. dudaim] >ASY96953.1 RNA polymerase alpha subunit [Cucumis melo var. cantalupo] >ASY97127.1 RNA polymerase alpha subunit [Cucumis melo var. inodorus] >ASY97301.1 RNA polymerase alpha subunit [Cucumis melo var. flexuosus] >QRW36587.1 RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-09
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match: Q9BBQ4 (DNA-directed RNA polymerase subunit alpha OS=Lotus japonicus OX=34305 GN=rpoA PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.7e-08
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           +DAIFMP+RN +HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 IDAIFMPVRNANHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-08
Identity = 25/32 (78.12%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           +DA FMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 IDATFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match: P13911 (DNA-directed RNA polymerase subunit alpha OS=Pisum sativum OX=3888 GN=rpoA PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.7e-08
Identity = 23/32 (71.88%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           +DA+FMP+RN +HSI+SYVNGN+KQE+ FLEI
Sbjct: 171 IDAVFMPVRNANHSIHSYVNGNQKQEILFLEI 202

[Close]

BLAST of MELO3C031060 vs. ExPASy Swiss-Prot
Match: Q09G14 (DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis OX=4403 GN=rpoA PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.0e-07
Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           +DA+FMP+RN +HSI+SY NGNEKQE+ FLEI
Sbjct: 172 IDAVFMPVRNANHSIHSYANGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match: A0A218KG62 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoA PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match: A0A1X9Q1P4 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match: A0A249RZB5 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoA PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match: A0A249RXS6 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoA PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. ExPASy TrEMBL
Match: A0A286NFR2 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoA PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           MDAIFMP+RNV+HSI+SYVNGNEKQE+ FLEI
Sbjct: 172 MDAIFMPVRNVNHSIHSYVNGNEKQEILFLEI 203

[Close]

BLAST of MELO3C031060 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-08
Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   MDAIFMPIRNVSHSINSYVNGNEKQEMFFLEI 33
           +DA+FMP+ N +HSI+SY NGNEKQE+ FLEI
Sbjct: 172 IDAVFMPVENANHSIHSYGNGNEKQEILFLEI 203

The following BLAST results are available for this feature:

BLAST of MELO3C031060 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009004075.1	2.4e-06	84.38	RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha...	[more]
QHB75996.1	2.4e-06	84.38	RNA polymerase alpha subunit [Cucumis melo subsp. melo]	[more]
QJF46416.1	2.4e-06	84.38	RNA polymerase alpha subunit [Cucumis melo]	[more]
YP_009346515.1	2.4e-06	84.38	RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alph...	[more]
YP_004841815.1	2.4e-06	84.38	RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA poly...	[more]

BLAST of MELO3C031060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	3.1e-09	84.38	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
Q9BBQ4	2.7e-08	78.13	DNA-directed RNA polymerase subunit alpha OS=Lotus japonicus OX=34305 GN=rpoA PE...	[more]
Q2PMQ3	3.5e-08	78.13	DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV...	[more]
P13911	7.7e-08	71.88	DNA-directed RNA polymerase subunit alpha OS=Pisum sativum OX=3888 GN=rpoA PE=3 ...	[more]
Q09G14	1.0e-07	71.88	DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis OX=4403 GN=rp...	[more]

BLAST of MELO3C031060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG62	1.2e-06	84.38	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A1X9Q1P4	1.2e-06	84.38	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
A0A249RZB5	1.2e-06	84.38	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A249RXS6	1.2e-06	84.38	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. agrestis OX=217...	[more]
A0A286NFR2	1.2e-06	84.38	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. flexuosus OX=1120...	[more]

BLAST of MELO3C031060 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	6.1e-08	68.75	RNA polymerase subunit alpha	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031060.1	MELO3C031060.1	mRNA