MELO3C031017 (gene) Melon (DHL92) v4

Overview


Name	MELO3C031017
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	low temperature-induced protein lt101.2-like
Location	chr04: 31685042 .. 31685653 (+)
RNA-Seq Expression	MELO3C031017
Synteny	MELO3C031017

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGTAGTAAATTCTCTGGGATTAAATTACTCTGATTATCGAAATTATTACGTGGTTGTAGGGAAACCCCTCGAGCCTGTAGATAAGTGAGTTAACTAAGTGTAAGGTGTAAGAGGTGAGAAAGTTGAATTAGGAATTTAGTATATTGTTCCCCTACTCTTAAAATTACAAATTTATGTTTTTTTTAATTTTATTTGGGGAGTTTTTTGTATTATATTTTAATTGAGAAAATAACATATTATCATAGTAAACTTTCTATTATTGTAATTTAAGATTTATTAAAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGTAGTAGAAAATAGGAAGTTCATTTAAAGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGTATT

mRNA sequence

ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGTATT

Coding sequence (CDS)

ATGATTTACATGAACAACAATCTTTGCAATAATATTAACACCGTACAGGCAAAAAGAAAAAGATGGAAGGGAAGGAGTAAAAGAAAGAAGTTAAAAAAAGAAGAGAGAAATGAGGAAGTGGCGGCAGTTGAAGAGGTGAGGCGCGGGAGGGAGGGAAGGAGAAAGGGGAAAGTGGAAATGCACGGAGCAGGACAAGTAGATCGAATACCAAAGAGAATGGGTTCGGCCACATTCGTCGAAGTCCTTCTCGCCATCTTCATTCCACCCGTCGGCGTTTTTCTCCGCTATGGCATTGGGGTA

Protein sequence

MIYMNNNLCNNINTVQAKRKRWKGRSKRKKLKKEERNEEVAAVEEVRRGREGRRKGKVEMHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV

Homology

[Close]

BLAST of MELO3C031017 vs. NCBI nr
Match: XP_008442650.1 (PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 8.3e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG+
Sbjct: 1   MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGI 41

[Close]

BLAST of MELO3C031017 vs. NCBI nr
Match: XP_004137807.1 (low temperature-induced protein lt101.2 [Cucumis sativus] >KGN58938.1 hypothetical protein Csa_001360 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           M G GQVDRIPKRMGSATF+EVLLAIFIPPVGVFLRYGIG+
Sbjct: 1   MLGGGQVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIGI 41

[Close]

BLAST of MELO3C031017 vs. NCBI nr
Match: XP_038906189.1 (low temperature-induced protein lt101.2-like [Benincasa hispida])

HSP 1 Score: 67.4 bits (163), Expect = 8.0e-08
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 46  VRRGREGRRKGKVEMHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           +RR R  R++   +   A Q DRIPKRMGSATF+EVLLAIFIPP+GVFLRYGIG+
Sbjct: 1   MRRERAERQR---QRERAMQGDRIPKRMGSATFIEVLLAIFIPPLGVFLRYGIGI 52

[Close]

BLAST of MELO3C031017 vs. NCBI nr
Match: XP_022145681.1 (low temperature-induced protein lt101.2-like [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 8.0e-08
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           Q DRIPKRMGSATF+EVLLA+FIPP+GVFLRYGIG+
Sbjct: 2   QGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGI 37

[Close]

BLAST of MELO3C031017 vs. NCBI nr
Match: XP_022945600.1 (low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767.1 low temperature-induced protein lt101.2-like [Cucurbita maxima] >XP_023540674.1 low temperature-induced protein lt101.2-like [Cucurbita pepo subsp. pepo] >KAG7027999.1 Low temperature-induced protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           Q +RIPKRMGSATFVEVL+AIFIPP+GVFLRYGIGV
Sbjct: 2   QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGV 37

[Close]

BLAST of MELO3C031017 vs. ExPASy Swiss-Prot
Match: Q9ARD5 (Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.1e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           M SATF+EV+LAI +PPVGVFLRYG+ V
Sbjct: 1   MASATFIEVILAIILPPVGVFLRYGLAV 28

[Close]

BLAST of MELO3C031017 vs. ExPASy Swiss-Prot
Match: P68178 (Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=ESI3 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           MGSAT +EV+LAI +PPVGVFLRY +GV
Sbjct: 1   MGSATVLEVILAIILPPVGVFLRYKLGV 28

[Close]

BLAST of MELO3C031017 vs. ExPASy Swiss-Prot
Match: P68179 (Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.3e-04
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           MGSAT +EV+LAI +PPVGVFLRY +GV
Sbjct: 1   MGSATVLEVILAIILPPVGVFLRYKLGV 28

[Close]

BLAST of MELO3C031017 vs. ExPASy TrEMBL
Match: A0A1S3B667 (low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC103486456 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.0e-13
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIG+
Sbjct: 1   MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGI 41

[Close]

BLAST of MELO3C031017 vs. ExPASy TrEMBL
Match: A0A0A0LAU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.9e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 60  MHGAGQVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           M G GQVDRIPKRMGSATF+EVLLAIFIPPVGVFLRYGIG+
Sbjct: 1   MLGGGQVDRIPKRMGSATFIEVLLAIFIPPVGVFLRYGIGI 41

[Close]

BLAST of MELO3C031017 vs. ExPASy TrEMBL
Match: A0A6J1CX15 (low temperature-induced protein lt101.2-like OS=Momordica charantia OX=3673 GN=LOC111015073 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.9e-08
Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           Q DRIPKRMGSATF+EVLLA+FIPP+GVFLRYGIG+
Sbjct: 2   QGDRIPKRMGSATFLEVLLAVFIPPLGVFLRYGIGI 37

[Close]

BLAST of MELO3C031017 vs. ExPASy TrEMBL
Match: A0A6J1KU26 (low temperature-induced protein lt101.2-like OS=Cucurbita maxima OX=3661 GN=LOC111498668 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           Q +RIPKRMGSATFVEVL+AIFIPP+GVFLRYGIGV
Sbjct: 2   QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGV 37

[Close]

BLAST of MELO3C031017 vs. ExPASy TrEMBL
Match: A0A6J1G1E1 (low temperature-induced protein lt101.2-like OS=Cucurbita moschata OX=3662 GN=LOC111449786 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 0


Query: 65  QVDRIPKRMGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           Q +RIPKRMGSATFVEVL+AIFIPP+GVFLRYGIGV
Sbjct: 2   QGERIPKRMGSATFVEVLIAIFIPPLGVFLRYGIGV 37

[Close]

BLAST of MELO3C031017 vs. TAIR 10
Match: AT2G38905.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 47.8 bits (112), Expect = 6.1e-06
Identity = 21/28 (75.00%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           MGS TF+E++LAI +PPVGVFLRYG GV
Sbjct: 1   MGSETFLEIILAILLPPVGVFLRYGCGV 28

[Close]

BLAST of MELO3C031017 vs. TAIR 10
Match: AT1G57550.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           MGS  F+EVL AIFIPPVGVFLRYG+G+
Sbjct: 1   MGS--FLEVLCAIFIPPVGVFLRYGLGL 26

[Close]

BLAST of MELO3C031017 vs. TAIR 10
Match: AT3G05880.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 17/28 (60.71%), Postives = 25/28 (89.29%), Query Frame = 0


Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           M +ATFV++++AI +PP+GVFLR+G GV
Sbjct: 1   MSTATFVDIIIAILLPPLGVFLRFGCGV 28

[Close]

BLAST of MELO3C031017 vs. TAIR 10
Match: AT3G05890.1 (Low temperature and salt responsive protein family )

HSP 1 Score: 40.4 bits (93), Expect = 9.8e-04
Identity = 17/28 (60.71%), Postives = 24/28 (85.71%), Query Frame = 0


Query: 73  MGSATFVEVLLAIFIPPVGVFLRYGIGV 101
           M +ATFVE++LAI +PP+GVFL++G  V
Sbjct: 1   MSTATFVEIILAIILPPLGVFLKFGCKV 28

The following BLAST results are available for this feature:

BLAST of MELO3C031017 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442650.1	8.3e-13	97.56	PREDICTED: low temperature-induced protein lt101.2-like [Cucumis melo]	[more]
XP_004137807.1	5.9e-11	90.24	low temperature-induced protein lt101.2 [Cucumis sativus] >KGN58938.1 hypothetic...	[more]
XP_038906189.1	8.0e-08	67.27	low temperature-induced protein lt101.2-like [Benincasa hispida]	[more]
XP_022145681.1	8.0e-08	86.11	low temperature-induced protein lt101.2-like [Momordica charantia]	[more]
XP_022945600.1	1.0e-07	88.89	low temperature-induced protein lt101.2-like [Cucurbita moschata] >XP_023005767....	[more]

BLAST of MELO3C031017 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ARD5	1.1e-04	75.00	Low temperature-induced protein lt101.2 OS=Hordeum vulgare OX=4513 GN=LT101.2 PE...	[more]
P68178	4.3e-04	75.00	Salt stress-induced hydrophobic peptide ESI3 OS=Thinopyrum elongatum OX=4588 GN=...	[more]
P68179	4.3e-04	75.00	Low temperature-induced protein lt101.1 OS=Hordeum vulgare OX=4513 GN=LT101.1 PE...	[more]

BLAST of MELO3C031017 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B667	4.0e-13	97.56	low temperature-induced protein lt101.2-like OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0LAU7	2.9e-11	90.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736860 PE=3 SV=1	[more]
A0A6J1CX15	3.9e-08	86.11	low temperature-induced protein lt101.2-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1KU26	5.1e-08	88.89	low temperature-induced protein lt101.2-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1G1E1	5.1e-08	88.89	low temperature-induced protein lt101.2-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of MELO3C031017 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38905.1	6.1e-06	75.00	Low temperature and salt responsive protein family	[more]
AT1G57550.1	1.2e-04	78.57	Low temperature and salt responsive protein family	[more]
AT3G05880.1	2.0e-04	60.71	Low temperature and salt responsive protein family	[more]
AT3G05890.1	9.8e-04	60.71	Low temperature and salt responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000612	Proteolipid membrane potential modulator	PROSITE	PS01309	UPF0057	coord: 82..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C031017.1	MELO3C031017.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane