Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGACTTTGATTTGGTATTGGGAATCGAATTGTCGATTAGCATGCTTGTCCAAGGTGTTCTTTGCCTATGACCGCATGCCCAAACACCCCCAAATAATTGTCTTTATGTCTTGTACGTAGTCTAGTCTATTGCTTTCCTTTTTGTGTGTCGGGCTAGGGTGTGACGTTTCGGCATTTTCATATGCAAACCTGCCAAGGTTAAACATGTTCAAAATATACTATAAGAGAGACATAGTAGTTGAATCTCCGACCAAGCCTTATTGCACTCTTTGCAAGCTAAGTATTTCTTTGCCATTGACAATCTTCAATGCTTGTGACACTTACCAGTTTTATAATGTTTTCAATGATTTCCTTTCTCTCTCATGTTTTATAAAACAATTTTCTCAAGAAGGTGAAGGGAGGCTACATCATACCATAAGTTTGTTTGCGACTTTCGAATTTTATACGGTTGACTTGTTGACGGAGCAGAACAAGTGCCGCACAATCATGTATGAAAAGCTACGATTGTGACACTTACCAGTTCCTCAACGAACAAAAAACGTGACAGGTTGATTGATTTGTAGCCTAATTCCTAAATTCATGTATGCTATATATTTGAACTCTAAACCAATCAAAAGCTCTTTGAGCTTGACAACGTATCAACCTCAAATGTTTCTGAAGTTTGTGTAAATACAATAAAAAAGACTTTAAAATCGCTAGTGAAGTATAAAGTTGAAAATGCGTACTTGCGGCAGTCCCCTATTTCATCTACATTGTTGAGGATGTACTAATGTGCAAGTGAAATGTTAGAAATGAATCTATCGAGAAACTTAACTGGCTTCAGATACTTGCAAAATGCAACTCGCTCGCCACTGGTTAATGTGTATGTTGCATGTGAATATAAAGTTGTGAGTTTGTGTGACTATAATAACAAAGACTTTAAATAACTAGTGAAGTATAAAGTTGGAAATGCGTACTTGCGGTGGTCCGCTATTACAGCTACATTGTTGAGCATGCACCAATGTGCAAAGCGTTTCTCTTCCTGTGATAGAGTTTGTAAGCTTGACGCCCCTAACTGTCGTACTTTCTGCAAGTACACTTCAAACTCACAAATTACCTCGTCATCGGGAATATTATCATCAATTTGTTCATCTTTAATGAATCGAGTTGCAATCTCACTTAGATATCTCGAACAAAGATTTTCTAATACCCCTCAAGACGTGCTTTGCTTCGAACAAATTGTTTTAACGTGCGTAGACTATTTTCAATAGGATACATCCACCTGTAAGAGATCGGACCAACAACTTTGGTTTCATATGGTAGGTGAACAGCAAGGTGTATCATTACGTCGAAGAACGCAGGTCAGAATACTCTTATCGTTCTTGCGCACAAGTCACAAAACAAAACCACACATTTCAGTAACAGTGAAACATTTTTCGGTAGAGAATACCAATAGGGAGAAGTCGATGTAGCAAAACGTGATAGTAATGTGTTTTAAGACCTAATATTTTTCCGTCTCTGTCATTCACACATCGTGAAATATTAGAAACAAATCCATCGAAAACCTTAACTGACTTCAGATACTTGCAAAACGCAACTGGCTCGCTTCTAGTCAACATGTACGTTGCATGTGACTTCACAAATCTGTTAACGACTTCTATAAAGTGTAAATCCTTTCTTATTTTCAAATTTTGTAAGTTCAACCGAGCATTCATGACATCTTTCAATATTTAACAACGTTCCAACCAAGTTGTCACAATCATTCTTTTTAATATGCATTACATCTATTTTATGACGTAATGGTAGTTTTAAAAGAAAGAAAGTTTGAAAAAGATACTTCCTCTTAGTCTTGTTGAGAGCTCCCTTTTTATTCTTATCTTTCAGCTATGAATGTTTACTCATAGCTGGAAAATCCAACGAATCTAGCTGTCCAAGATATCATGCCCATTAAATACAATTGGAGGAGTCTTACGCTCTACCTTTCCATCATGTAGCTAACTTCTACGCCAAACGTGATTCTCTAGAAGATAACAACGATGTCTCTCATGAAAGATATTTTTCCTCTTATCTCGAACAACGATTTGTCTCTCATGCATATGAAACATGTCTGATACCCTTTCGTACTCCACCCGGATAAGTTACTATACGCCGAGAGGTCATTAATTGTCAACAACAAAGCTGCATACGGTGAAATCTCTATACTATTGAATAAATCACAATAATTTAGAGTATATAGTAATGTTTTACACAGGAATATATATAGACCTCAAAGAAACCACTAAATGGAAATTCATCAAATGGAAAATACTAAGGGTGTGTTTGGGGGAAGGAAAGAGTTATGGAGGAAAAGGATTATAATAATCCTAGGATTATGATAGGATTATGATAATCCTAGTGTTATGATAATATGTGTTTGAGGAATAGATTATTAATGGTAGTGTTGTGGTAATATGTGTTTGGGAGAGAAAATAA
mRNA sequence
ATGGACGACTTTGATTTGGTATTGGGAATCGAATTGTCGATTAGCATGCTTGTCCAAGTCGGGCTAGGGTGTGACGTTTCGGCATTTTCATATGCAAACCTGCCAAGGTTAAACATGTTCAAAATATACTATAAGAGAGACATAGTAGTTGAATCTCCGACCAAGCCTTATTGCACTCTTTGCAAGCTAAGTATTTCTTTGCCATTGACAATCTTCAATGCTTGTGACACTTACCAGTTTTATAATGTTTTCAATGATTTCCTTTCTCTCTCATGTTTTATAAAACAATTTTCTCAAGAAGGTGAAGGGAGGCTACATCATACCATAAGTTTGTTTGCGACTTTCGAATTTTATACGGTTGACTTGTTGACGGAGCAGAACAAGTGCCGCACAATCATGTATGAAAAGCTACGATTGTGACACTTACCAGTTCCTCAACGAACAAAAAACGTGACAGGTTGATTGATTTGTAGCCTAATTCCTAAATTCATGTATGCTATATATTTGAACTCTAAACCAATCAAAAGCTCTTTGAGCTTGACAACGTATCAACCTCAAATGTTTCTGAAGTTTGTGTAAATACAATAAAAAAGACTTTAAAATCGCTAGTGAAGTATAAAGTTGAAAATGCGTACTTGCGGCAGTCCCCTATTTCATCTACATTGTTGAGGATGTACTAATGTGCAAGTGAAATGTTAGAAATGAATCTATCGAGAAACTTAACTGGCTTCAGATACTTGCAAAATGCAACTCGCTCGCCACTGGTTAATGTGTATGTTGCATGTGAATATAAAGTTGTGAGTTTGTGTGACTATAATAACAAAGACTTTAAATAACTAGTGAAGTATAAAGTTGGAAATGCGTACTTGCGGTGGTCCGCTATTACAGCTACATTGTTGAGCATGCACCAATGTGCAAAGCGTTTCTCTTCCTGTGATAGAGTTTGTAAGCTTGACGCCCCTAACTGTCGTACTTTCTGCAAGTACACTTCAAACTCACAAATTACCTCGTCATCGGGAATATTATCATCAATTTGTTCATCTTTAATGAATCGAGTTGCAATCTCACTTAGATATCTCGAACAAAGATTTTCTAATACCCCTCAAGACGTGCTTTGCTTCGAACAAATTGTTTTAACGTGCGTAGACTATTTTCAATAGGATACATCCACCTGTAAGAGATCGGACCAACAACTTTGGTTTCATATGGTAGGTGAACAGCAAGGTGTATCATTACGTCGAAGAACGCAGGTCAGAATACTCTTATCGTTCTTGCGCACAAGTCACAAAACAAAACCACACATTTCAGTAACAGTGAAACATTTTTCGGTAGAGAATACCAATAGGGAGAAGTCGATGTAGCAAAACGTGATAGTAATGTGTTTTAAGACCTAATATTTTTCCGTCTCTGTCATTCACACATCGTGAAATATTAGAAACAAATCCATCGAAAACCTTAACTGACTTCAGATACTTGCAAAACGCAACTGGCTCGCTTCTAGTCAACATGTACGTTGCATGTGACTTCACAAATCTGTTAACGACTTCTATAAAGTGTAAATCCTTTCTTATTTTCAAATTTTGTAAGTTCAACCGAGCATTCATGACATCTTTCAATATTTAACAACGTTCCAACCAAGTTGTCACAATCATTCTTTTTAATATGCATTACATCTATTTTATGACGTAATGGTAGTTTTAAAAGAAAGAAAGTTTGAAAAAGATACTTCCTCTTAGTCTTGTTGAGAGCTCCCTTTTTATTCTTATCTTTCAGCTATGAATGTTTACTCATAGCTGGAAAATCCAACGAATCTAGCTGTCCAAGATATCATGCCCATTAAATACAATTGGAGGAGTCTTACGCTCTACCTTTCCATCATGTAGCTAACTTCTACGCCAAACGTGATTCTCTAGAAGATAACAACGATGTCTCTCATGAAAGATATTTTTCCTCTTATCTCGAACAACGATTTGTCTCTCATGCATATGAAACATGTCTGATACCCTTTCGTACTCCACCCGGATAAGTTACTATACGCCGAGAGGTCATTAATTGTCAACAACAAAGCTGCATACGGTGAAATCTCTATACTATTGAATAAATCACAATAATTTAGAGTATATAGTAATGTTTTACACAGGAATATATATAGACCTCAAAGAAACCACTAAATGGAAATTCATCAAATGGAAAATACTAAGGGTGTGTTTGGGGGAAGGAAAGAGTTATGGAGGAAAAGGATTATAATAATCCTAGGATTATGATAGGATTATGATAATCCTAGTGTTATGATAATATGTGTTTGAGGAATAGATTATTAATGGTAGTGTTGTGGTAATATGTGTTTGGGAGAGAAAATAA
Coding sequence (CDS)
ATGGACGACTTTGATTTGGTATTGGGAATCGAATTGTCGATTAGCATGCTTGTCCAAGTCGGGCTAGGGTGTGACGTTTCGGCATTTTCATATGCAAACCTGCCAAGGTTAAACATGTTCAAAATATACTATAAGAGAGACATAGTAGTTGAATCTCCGACCAAGCCTTATTGCACTCTTTGCAAGCTAAGTATTTCTTTGCCATTGACAATCTTCAATGCTTGTGACACTTACCAGTTTTATAATGTTTTCAATGATTTCCTTTCTCTCTCATGTTTTATAAAACAATTTTCTCAAGAAGGTGAAGGGAGGCTACATCATACCATAAGTTTGTTTGCGACTTTCGAATTTTATACGGTTGACTTGTTGACGGAGCAGAACAAGTGCCGCACAATCATGTATGAAAAGCTACGATTGTGA
Protein sequence
MDDFDLVLGIELSISMLVQVGLGCDVSAFSYANLPRLNMFKIYYKRDIVVESPTKPYCTLCKLSISLPLTIFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIMYEKLRL
Homology
BLAST of MELO3C030984 vs. NCBI nr
Match:
TYJ96246.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])
HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0
Query: 71 IFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCR 130
+FNA FY+VFN+ SLS FIK FSQE EGRL HT SL A FEF T DLL E NKCR
Sbjct: 137 VFNA----HFYDVFNNLFSLSRFIKPFSQEREGRLRHTASLSADFEFRTADLLIELNKCR 194
Query: 131 TI 133
TI
Sbjct: 197 TI 194
BLAST of MELO3C030984 vs. NCBI nr
Match:
KAA0045081.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])
HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0
Query: 71 IFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCR 130
+FNA FY+VFN+ SLS FIK FSQE EGRL HT SL A FEF T DLL E NKCR
Sbjct: 227 VFNA----HFYDVFNNLFSLSRFIKPFSQEREGRLRHTASLSADFEFRTADLLIELNKCR 284
Query: 131 TI 133
TI
Sbjct: 287 TI 284
BLAST of MELO3C030984 vs. NCBI nr
Match:
KAA0046992.1 (uncharacterized protein E6C27_scaffold230G001810 [Cucumis melo var. makuwa] >TYK04791.1 uncharacterized protein E5676_scaffold68G001120 [Cucumis melo var. makuwa])
HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0
Query: 81 YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
Y+VFN LSLS FIK FSQE EGRL HT+SL A EF TVDLL E +KCRTI+
Sbjct: 970 YDVFNYLLSLSRFIKTFSQEREGRLRHTMSLSADSEFRTVDLLIELSKCRTIV 1022
BLAST of MELO3C030984 vs. NCBI nr
Match:
KAA0025483.1 (uncharacterized protein E6C27_scaffold417G00870 [Cucumis melo var. makuwa] >TYK00382.1 uncharacterized protein E5676_scaffold1112G00490 [Cucumis melo var. makuwa])
HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 37/53 (69.81%), Postives = 38/53 (71.70%), Query Frame = 0
Query: 81 YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
Y+VFN LSLS FIK FS E GRLHHT SL A EF T DLL E NKCRTIM
Sbjct: 693 YDVFNYLLSLSHFIKTFSHERGGRLHHTASLSADSEFRTADLLIELNKCRTIM 745
BLAST of MELO3C030984 vs. NCBI nr
Match:
TYK02230.1 (gag-protease polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 0
Query: 81 YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
Y+VFN +SLS FIK FSQE GRLHHT SL A EF T DLL E NKCRTI+
Sbjct: 219 YDVFNYLISLSRFIKTFSQERGGRLHHTASLSADSEFQTADLLIELNKCRTIV 271
BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match:
A0A5A7TU81 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00730 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 8.9e-11
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0
Query: 71 IFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCR 130
+FNA FY+VFN+ SLS FIK FSQE EGRL HT SL A FEF T DLL E NKCR
Sbjct: 227 VFNA----HFYDVFNNLFSLSRFIKPFSQEREGRLRHTASLSADFEFRTADLLIELNKCR 284
Query: 131 TI 133
TI
Sbjct: 287 TI 284
BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match:
A0A5D3BBJ0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00360 PE=4 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 8.9e-11
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0
Query: 71 IFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCR 130
+FNA FY+VFN+ SLS FIK FSQE EGRL HT SL A FEF T DLL E NKCR
Sbjct: 137 VFNA----HFYDVFNNLFSLSRFIKPFSQEREGRLRHTASLSADFEFRTADLLIELNKCR 194
Query: 131 TI 133
TI
Sbjct: 197 TI 194
BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match:
A0A5A7TU58 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001120 PE=4 SV=1)
HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0
Query: 81 YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
Y+VFN LSLS FIK FSQE EGRL HT+SL A EF TVDLL E +KCRTI+
Sbjct: 970 YDVFNYLLSLSRFIKTFSQEREGRLRHTMSLSADSEFRTVDLLIELSKCRTIV 1022
BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match:
A0A5A7SLE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00490 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 8.3e-09
Identity = 37/53 (69.81%), Postives = 38/53 (71.70%), Query Frame = 0
Query: 81 YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
Y+VFN LSLS FIK FS E GRLHHT SL A EF T DLL E NKCRTIM
Sbjct: 693 YDVFNYLLSLSHFIKTFSHERGGRLHHTASLSADSEFRTADLLIELNKCRTIM 745
BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match:
A0A5A7UXF7 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005290 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 8.3e-09
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 0
Query: 81 YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
Y+VFN +SLS FIK FSQE GRLHHT SL A EF T DLL E NKCRTI+
Sbjct: 21 YDVFNYLISLSRFIKTFSQERGGRLHHTASLSADSEFQTADLLIELNKCRTIV 73
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| TYJ96246.1 | 1.8e-10 | 66.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... | [more] |
| KAA0045081.1 | 1.8e-10 | 66.13 | Zinc finger, CCHC-type [Cucumis melo var. makuwa] | [more] |
| KAA0046992.1 | 1.3e-08 | 69.81 | uncharacterized protein E6C27_scaffold230G001810 [Cucumis melo var. makuwa] >TYK... | [more] |
| KAA0025483.1 | 1.7e-08 | 69.81 | uncharacterized protein E6C27_scaffold417G00870 [Cucumis melo var. makuwa] >TYK0... | [more] |
| TYK02230.1 | 1.7e-08 | 67.92 | gag-protease polyprotein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TU81 | 8.9e-11 | 66.13 | Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3... | [more] |
| A0A5D3BBJ0 | 8.9e-11 | 66.13 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
| A0A5A7TU58 | 6.4e-09 | 69.81 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
| A0A5A7SLE2 | 8.3e-09 | 69.81 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7UXF7 | 8.3e-09 | 67.92 | Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
