MELO3C030984 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030984
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Gag-protease polyprotein
Location	chr04: 28005334 .. 28007788 (+)
RNA-Seq Expression	MELO3C030984
Synteny	MELO3C030984

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGACTTTGATTTGGTATTGGGAATCGAATTGTCGATTAGCATGCTTGTCCAAGGTGTTCTTTGCCTATGACCGCATGCCCAAACACCCCCAAATAATTGTCTTTATGTCTTGTACGTAGTCTAGTCTATTGCTTTCCTTTTTGTGTGTCGGGCTAGGGTGTGACGTTTCGGCATTTTCATATGCAAACCTGCCAAGGTTAAACATGTTCAAAATATACTATAAGAGAGACATAGTAGTTGAATCTCCGACCAAGCCTTATTGCACTCTTTGCAAGCTAAGTATTTCTTTGCCATTGACAATCTTCAATGCTTGTGACACTTACCAGTTTTATAATGTTTTCAATGATTTCCTTTCTCTCTCATGTTTTATAAAACAATTTTCTCAAGAAGGTGAAGGGAGGCTACATCATACCATAAGTTTGTTTGCGACTTTCGAATTTTATACGGTTGACTTGTTGACGGAGCAGAACAAGTGCCGCACAATCATGTATGAAAAGCTACGATTGTGACACTTACCAGTTCCTCAACGAACAAAAAACGTGACAGGTTGATTGATTTGTAGCCTAATTCCTAAATTCATGTATGCTATATATTTGAACTCTAAACCAATCAAAAGCTCTTTGAGCTTGACAACGTATCAACCTCAAATGTTTCTGAAGTTTGTGTAAATACAATAAAAAAGACTTTAAAATCGCTAGTGAAGTATAAAGTTGAAAATGCGTACTTGCGGCAGTCCCCTATTTCATCTACATTGTTGAGGATGTACTAATGTGCAAGTGAAATGTTAGAAATGAATCTATCGAGAAACTTAACTGGCTTCAGATACTTGCAAAATGCAACTCGCTCGCCACTGGTTAATGTGTATGTTGCATGTGAATATAAAGTTGTGAGTTTGTGTGACTATAATAACAAAGACTTTAAATAACTAGTGAAGTATAAAGTTGGAAATGCGTACTTGCGGTGGTCCGCTATTACAGCTACATTGTTGAGCATGCACCAATGTGCAAAGCGTTTCTCTTCCTGTGATAGAGTTTGTAAGCTTGACGCCCCTAACTGTCGTACTTTCTGCAAGTACACTTCAAACTCACAAATTACCTCGTCATCGGGAATATTATCATCAATTTGTTCATCTTTAATGAATCGAGTTGCAATCTCACTTAGATATCTCGAACAAAGATTTTCTAATACCCCTCAAGACGTGCTTTGCTTCGAACAAATTGTTTTAACGTGCGTAGACTATTTTCAATAGGATACATCCACCTGTAAGAGATCGGACCAACAACTTTGGTTTCATATGGTAGGTGAACAGCAAGGTGTATCATTACGTCGAAGAACGCAGGTCAGAATACTCTTATCGTTCTTGCGCACAAGTCACAAAACAAAACCACACATTTCAGTAACAGTGAAACATTTTTCGGTAGAGAATACCAATAGGGAGAAGTCGATGTAGCAAAACGTGATAGTAATGTGTTTTAAGACCTAATATTTTTCCGTCTCTGTCATTCACACATCGTGAAATATTAGAAACAAATCCATCGAAAACCTTAACTGACTTCAGATACTTGCAAAACGCAACTGGCTCGCTTCTAGTCAACATGTACGTTGCATGTGACTTCACAAATCTGTTAACGACTTCTATAAAGTGTAAATCCTTTCTTATTTTCAAATTTTGTAAGTTCAACCGAGCATTCATGACATCTTTCAATATTTAACAACGTTCCAACCAAGTTGTCACAATCATTCTTTTTAATATGCATTACATCTATTTTATGACGTAATGGTAGTTTTAAAAGAAAGAAAGTTTGAAAAAGATACTTCCTCTTAGTCTTGTTGAGAGCTCCCTTTTTATTCTTATCTTTCAGCTATGAATGTTTACTCATAGCTGGAAAATCCAACGAATCTAGCTGTCCAAGATATCATGCCCATTAAATACAATTGGAGGAGTCTTACGCTCTACCTTTCCATCATGTAGCTAACTTCTACGCCAAACGTGATTCTCTAGAAGATAACAACGATGTCTCTCATGAAAGATATTTTTCCTCTTATCTCGAACAACGATTTGTCTCTCATGCATATGAAACATGTCTGATACCCTTTCGTACTCCACCCGGATAAGTTACTATACGCCGAGAGGTCATTAATTGTCAACAACAAAGCTGCATACGGTGAAATCTCTATACTATTGAATAAATCACAATAATTTAGAGTATATAGTAATGTTTTACACAGGAATATATATAGACCTCAAAGAAACCACTAAATGGAAATTCATCAAATGGAAAATACTAAGGGTGTGTTTGGGGGAAGGAAAGAGTTATGGAGGAAAAGGATTATAATAATCCTAGGATTATGATAGGATTATGATAATCCTAGTGTTATGATAATATGTGTTTGAGGAATAGATTATTAATGGTAGTGTTGTGGTAATATGTGTTTGGGAGAGAAAATAA

mRNA sequence

ATGGACGACTTTGATTTGGTATTGGGAATCGAATTGTCGATTAGCATGCTTGTCCAAGTCGGGCTAGGGTGTGACGTTTCGGCATTTTCATATGCAAACCTGCCAAGGTTAAACATGTTCAAAATATACTATAAGAGAGACATAGTAGTTGAATCTCCGACCAAGCCTTATTGCACTCTTTGCAAGCTAAGTATTTCTTTGCCATTGACAATCTTCAATGCTTGTGACACTTACCAGTTTTATAATGTTTTCAATGATTTCCTTTCTCTCTCATGTTTTATAAAACAATTTTCTCAAGAAGGTGAAGGGAGGCTACATCATACCATAAGTTTGTTTGCGACTTTCGAATTTTATACGGTTGACTTGTTGACGGAGCAGAACAAGTGCCGCACAATCATGTATGAAAAGCTACGATTGTGACACTTACCAGTTCCTCAACGAACAAAAAACGTGACAGGTTGATTGATTTGTAGCCTAATTCCTAAATTCATGTATGCTATATATTTGAACTCTAAACCAATCAAAAGCTCTTTGAGCTTGACAACGTATCAACCTCAAATGTTTCTGAAGTTTGTGTAAATACAATAAAAAAGACTTTAAAATCGCTAGTGAAGTATAAAGTTGAAAATGCGTACTTGCGGCAGTCCCCTATTTCATCTACATTGTTGAGGATGTACTAATGTGCAAGTGAAATGTTAGAAATGAATCTATCGAGAAACTTAACTGGCTTCAGATACTTGCAAAATGCAACTCGCTCGCCACTGGTTAATGTGTATGTTGCATGTGAATATAAAGTTGTGAGTTTGTGTGACTATAATAACAAAGACTTTAAATAACTAGTGAAGTATAAAGTTGGAAATGCGTACTTGCGGTGGTCCGCTATTACAGCTACATTGTTGAGCATGCACCAATGTGCAAAGCGTTTCTCTTCCTGTGATAGAGTTTGTAAGCTTGACGCCCCTAACTGTCGTACTTTCTGCAAGTACACTTCAAACTCACAAATTACCTCGTCATCGGGAATATTATCATCAATTTGTTCATCTTTAATGAATCGAGTTGCAATCTCACTTAGATATCTCGAACAAAGATTTTCTAATACCCCTCAAGACGTGCTTTGCTTCGAACAAATTGTTTTAACGTGCGTAGACTATTTTCAATAGGATACATCCACCTGTAAGAGATCGGACCAACAACTTTGGTTTCATATGGTAGGTGAACAGCAAGGTGTATCATTACGTCGAAGAACGCAGGTCAGAATACTCTTATCGTTCTTGCGCACAAGTCACAAAACAAAACCACACATTTCAGTAACAGTGAAACATTTTTCGGTAGAGAATACCAATAGGGAGAAGTCGATGTAGCAAAACGTGATAGTAATGTGTTTTAAGACCTAATATTTTTCCGTCTCTGTCATTCACACATCGTGAAATATTAGAAACAAATCCATCGAAAACCTTAACTGACTTCAGATACTTGCAAAACGCAACTGGCTCGCTTCTAGTCAACATGTACGTTGCATGTGACTTCACAAATCTGTTAACGACTTCTATAAAGTGTAAATCCTTTCTTATTTTCAAATTTTGTAAGTTCAACCGAGCATTCATGACATCTTTCAATATTTAACAACGTTCCAACCAAGTTGTCACAATCATTCTTTTTAATATGCATTACATCTATTTTATGACGTAATGGTAGTTTTAAAAGAAAGAAAGTTTGAAAAAGATACTTCCTCTTAGTCTTGTTGAGAGCTCCCTTTTTATTCTTATCTTTCAGCTATGAATGTTTACTCATAGCTGGAAAATCCAACGAATCTAGCTGTCCAAGATATCATGCCCATTAAATACAATTGGAGGAGTCTTACGCTCTACCTTTCCATCATGTAGCTAACTTCTACGCCAAACGTGATTCTCTAGAAGATAACAACGATGTCTCTCATGAAAGATATTTTTCCTCTTATCTCGAACAACGATTTGTCTCTCATGCATATGAAACATGTCTGATACCCTTTCGTACTCCACCCGGATAAGTTACTATACGCCGAGAGGTCATTAATTGTCAACAACAAAGCTGCATACGGTGAAATCTCTATACTATTGAATAAATCACAATAATTTAGAGTATATAGTAATGTTTTACACAGGAATATATATAGACCTCAAAGAAACCACTAAATGGAAATTCATCAAATGGAAAATACTAAGGGTGTGTTTGGGGGAAGGAAAGAGTTATGGAGGAAAAGGATTATAATAATCCTAGGATTATGATAGGATTATGATAATCCTAGTGTTATGATAATATGTGTTTGAGGAATAGATTATTAATGGTAGTGTTGTGGTAATATGTGTTTGGGAGAGAAAATAA

Coding sequence (CDS)

ATGGACGACTTTGATTTGGTATTGGGAATCGAATTGTCGATTAGCATGCTTGTCCAAGTCGGGCTAGGGTGTGACGTTTCGGCATTTTCATATGCAAACCTGCCAAGGTTAAACATGTTCAAAATATACTATAAGAGAGACATAGTAGTTGAATCTCCGACCAAGCCTTATTGCACTCTTTGCAAGCTAAGTATTTCTTTGCCATTGACAATCTTCAATGCTTGTGACACTTACCAGTTTTATAATGTTTTCAATGATTTCCTTTCTCTCTCATGTTTTATAAAACAATTTTCTCAAGAAGGTGAAGGGAGGCTACATCATACCATAAGTTTGTTTGCGACTTTCGAATTTTATACGGTTGACTTGTTGACGGAGCAGAACAAGTGCCGCACAATCATGTATGAAAAGCTACGATTGTGA

Protein sequence

MDDFDLVLGIELSISMLVQVGLGCDVSAFSYANLPRLNMFKIYYKRDIVVESPTKPYCTLCKLSISLPLTIFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIMYEKLRL

Homology

[Close]

BLAST of MELO3C030984 vs. NCBI nr
Match: TYJ96246.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 71  IFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCR 130
           +FNA     FY+VFN+  SLS FIK FSQE EGRL HT SL A FEF T DLL E NKCR
Sbjct: 137 VFNA----HFYDVFNNLFSLSRFIKPFSQEREGRLRHTASLSADFEFRTADLLIELNKCR 194

Query: 131 TI 133
           TI
Sbjct: 197 TI 194

[Close]

BLAST of MELO3C030984 vs. NCBI nr
Match: KAA0045081.1 (Zinc finger, CCHC-type [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 71  IFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCR 130
           +FNA     FY+VFN+  SLS FIK FSQE EGRL HT SL A FEF T DLL E NKCR
Sbjct: 227 VFNA----HFYDVFNNLFSLSRFIKPFSQEREGRLRHTASLSADFEFRTADLLIELNKCR 284

Query: 131 TI 133
           TI
Sbjct: 287 TI 284

[Close]

BLAST of MELO3C030984 vs. NCBI nr
Match: KAA0046992.1 (uncharacterized protein E6C27_scaffold230G001810 [Cucumis melo var. makuwa] >TYK04791.1 uncharacterized protein E5676_scaffold68G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-08
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 81   YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
            Y+VFN  LSLS FIK FSQE EGRL HT+SL A  EF TVDLL E +KCRTI+
Sbjct: 970  YDVFNYLLSLSRFIKTFSQEREGRLRHTMSLSADSEFRTVDLLIELSKCRTIV 1022

[Close]

BLAST of MELO3C030984 vs. NCBI nr
Match: KAA0025483.1 (uncharacterized protein E6C27_scaffold417G00870 [Cucumis melo var. makuwa] >TYK00382.1 uncharacterized protein E5676_scaffold1112G00490 [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 37/53 (69.81%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 81  YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
           Y+VFN  LSLS FIK FS E  GRLHHT SL A  EF T DLL E NKCRTIM
Sbjct: 693 YDVFNYLLSLSHFIKTFSHERGGRLHHTASLSADSEFRTADLLIELNKCRTIM 745

[Close]

BLAST of MELO3C030984 vs. NCBI nr
Match: TYK02230.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-08
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 81  YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
           Y+VFN  +SLS FIK FSQE  GRLHHT SL A  EF T DLL E NKCRTI+
Sbjct: 219 YDVFNYLISLSRFIKTFSQERGGRLHHTASLSADSEFQTADLLIELNKCRTIV 271

[Close]

BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match: A0A5A7TU81 (Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30G00730 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.9e-11
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 71  IFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCR 130
           +FNA     FY+VFN+  SLS FIK FSQE EGRL HT SL A FEF T DLL E NKCR
Sbjct: 227 VFNA----HFYDVFNNLFSLSRFIKPFSQEREGRLRHTASLSADFEFRTADLLIELNKCR 284

Query: 131 TI 133
           TI
Sbjct: 287 TI 284

[Close]

BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match: A0A5D3BBJ0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00360 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.9e-11
Identity = 41/62 (66.13%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 71  IFNACDTYQFYNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCR 130
           +FNA     FY+VFN+  SLS FIK FSQE EGRL HT SL A FEF T DLL E NKCR
Sbjct: 137 VFNA----HFYDVFNNLFSLSRFIKPFSQEREGRLRHTASLSADFEFRTADLLIELNKCR 194

Query: 131 TI 133
           TI
Sbjct: 197 TI 194

[Close]

BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match: A0A5A7TU58 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001120 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.4e-09
Identity = 37/53 (69.81%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 81   YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
            Y+VFN  LSLS FIK FSQE EGRL HT+SL A  EF TVDLL E +KCRTI+
Sbjct: 970  YDVFNYLLSLSRFIKTFSQEREGRLRHTMSLSADSEFRTVDLLIELSKCRTIV 1022

[Close]

BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match: A0A5A7SLE2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00490 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.3e-09
Identity = 37/53 (69.81%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 81  YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
           Y+VFN  LSLS FIK FS E  GRLHHT SL A  EF T DLL E NKCRTIM
Sbjct: 693 YDVFNYLLSLSHFIKTFSHERGGRLHHTASLSADSEFRTADLLIELNKCRTIM 745

[Close]

BLAST of MELO3C030984 vs. ExPASy TrEMBL
Match: A0A5A7UXF7 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005290 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.3e-09
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 81  YNVFNDFLSLSCFIKQFSQEGEGRLHHTISLFATFEFYTVDLLTEQNKCRTIM 134
           Y+VFN  +SLS FIK FSQE  GRLHHT SL A  EF T DLL E NKCRTI+
Sbjct: 21  YDVFNYLISLSRFIKTFSQERGGRLHHTASLSADSEFQTADLLIELNKCRTIV 73

The following BLAST results are available for this feature:

BLAST of MELO3C030984 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96246.1	1.8e-10	66.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0045081.1	1.8e-10	66.13	Zinc finger, CCHC-type [Cucumis melo var. makuwa]	[more]
KAA0046992.1	1.3e-08	69.81	uncharacterized protein E6C27_scaffold230G001810 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0025483.1	1.7e-08	69.81	uncharacterized protein E6C27_scaffold417G00870 [Cucumis melo var. makuwa] >TYK0...	[more]
TYK02230.1	1.7e-08	67.92	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030984 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TU81	8.9e-11	66.13	Zinc finger, CCHC-type OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3...	[more]
A0A5D3BBJ0	8.9e-11	66.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TU58	6.4e-09	69.81	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7SLE2	8.3e-09	69.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UXF7	8.3e-09	67.92	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]

BLAST of MELO3C030984 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030984.1	MELO3C030984.1	mRNA