Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGTTCGAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGTAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGGGAGTAGGACCTATCGAGTGGATCCAAGAGGAAGAGAAGAAGTCAGCGAGACTTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCAAATGAAAACAATGTGCTTATGGAATTCTTCCACATATTGCGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGGTATTGCAAAGGCATCTTCTGTCTCGTATGGACGAACTTCGGGGTTTCGTACTCATGCCTAAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAAACATCACGAGATAG
mRNA sequence
ATGGGGGTTCGAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGTAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGGGAGTAGGACCTATCGAGTGGATCCAAGAGGAAGAGAAGAAGTCAGCGAGACTTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCAAATGAAAACAATGTGCTTATGGAATTCTTCCACATATTGCGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGGTATTGCAAAGGCATCTTCTGTCTCGTATGGACGAACTTCGGGGTTTCGTACTCATGCCTAAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAAACATCACGAGATAG
Coding sequence (CDS)
ATGATTGCGGAGTGGCCTGCACGCGCCCTTGCAAATGAAAACAATGTGCTTATGGAATTCTTCCACATATTGCGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGGTATTGCAAAGGCATCTTCTGTCTCGTATGGACGAACTTCGGGGTTTCGTACTCATGCCTAAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAAACATCACGAGATAG
Protein sequence
MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDEREGFCRVLLRNITR
Homology
BLAST of MELO3C030843 vs. NCBI nr
Match:
KAA0053664.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00834.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query: 1 MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER
Sbjct: 1 MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
Query: 61 EGFCRVLLRNITR 74
EGFCRVLLRNITR
Sbjct: 61 EGFCRVLLRNITR 73
BLAST of MELO3C030843 vs. NCBI nr
Match:
KAA0049675.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12198.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 130.2 bits (326), Expect = 7.3e-27
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 0
Query: 2 IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
IAEWPAR LAN+N+V EFFHILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 211 IAEWPARTLANDNHVCTEFFHILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 270
Query: 62 GFCRVLLRNIT 73
GFCRV+LR+IT
Sbjct: 271 GFCRVILRDIT 281
BLAST of MELO3C030843 vs. NCBI nr
Match:
KAA0045638.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0
Query: 2 IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
IAEWPAR LAN+N+V MEFF ILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 414 IAEWPARNLANDNHVRMEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 473
Query: 62 GFCRVLLRNITR 74
GFCRVLLR+I R
Sbjct: 474 GFCRVLLRDIER 485
BLAST of MELO3C030843 vs. NCBI nr
Match:
TYK02619.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0
Query: 2 IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
IAEWPAR LAN+N+V MEFF ILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 414 IAEWPARNLANDNHVRMEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 473
Query: 62 GFCRVLLRNITR 74
GFCRVLLR+I R
Sbjct: 474 GFCRVLLRDIER 485
BLAST of MELO3C030843 vs. NCBI nr
Match:
KAA0042465.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22911.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0
Query: 1 MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
MIAEWP RALAN+N+V EFFHILREMPELTSLDR +LQR+LLSRMD+LRGFVLMPKDER
Sbjct: 167 MIAEWPTRALANDNHVYTEFFHILREMPELTSLDRVLLQRNLLSRMDDLRGFVLMPKDER 226
Query: 61 EGFCRVLLRNITR 74
EGFCRV L +ITR
Sbjct: 227 EGFCRVFLGDITR 239
BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match:
A0A5D3BNL9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00360 PE=4 SV=1)
HSP 1 Score: 149.4 bits (376), Expect = 5.7e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query: 1 MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER
Sbjct: 1 MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
Query: 61 EGFCRVLLRNITR 74
EGFCRVLLRNITR
Sbjct: 61 EGFCRVLLRNITR 73
BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match:
A0A5D3CM34 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001480 PE=4 SV=1)
HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 0
Query: 2 IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
IAEWPAR LAN+N+V EFFHILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 211 IAEWPARTLANDNHVCTEFFHILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 270
Query: 62 GFCRVLLRNIT 73
GFCRV+LR+IT
Sbjct: 271 GFCRVILRDIT 281
BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match:
A0A5D3BWV2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00270 PE=3 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0
Query: 2 IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
IAEWPAR LAN+N+V MEFF ILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 414 IAEWPARNLANDNHVRMEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 473
Query: 62 GFCRVLLRNITR 74
GFCRVLLR+I R
Sbjct: 474 GFCRVLLRDIER 485
BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match:
A0A5A7TS15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001490 PE=3 SV=1)
HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0
Query: 2 IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
IAEWPAR LAN+N+V MEFF ILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 414 IAEWPARNLANDNHVRMEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 473
Query: 62 GFCRVLLRNITR 74
GFCRVLLR+I R
Sbjct: 474 GFCRVLLRDIER 485
BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match:
A0A5D3DGX9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00520 PE=4 SV=1)
HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0
Query: 1 MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
MIAEWP RALAN+N+V EFFHILREMPELTSLDR +LQR+LLSRMD+LRGFVLMPKDER
Sbjct: 167 MIAEWPTRALANDNHVYTEFFHILREMPELTSLDRVLLQRNLLSRMDDLRGFVLMPKDER 226
Query: 61 EGFCRVLLRNITR 74
EGFCRV L +ITR
Sbjct: 227 EGFCRVFLGDITR 239
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0053664.1 | 1.2e-32 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00834.1 retrotransposon p... | [more] |
| KAA0049675.1 | 7.3e-27 | 85.92 | retrotransposon protein [Cucumis melo var. makuwa] >TYK12198.1 retrotransposon p... | [more] |
| KAA0045638.1 | 2.1e-26 | 86.11 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK02619.1 | 2.1e-26 | 86.11 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0042465.1 | 3.6e-26 | 83.56 | retrotransposon protein [Cucumis melo var. makuwa] >TYK22911.1 retrotransposon p... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BNL9 | 5.7e-33 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3CM34 | 3.6e-27 | 85.92 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5D3BWV2 | 1.0e-26 | 86.11 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5A7TS15 | 1.0e-26 | 86.11 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5D3DGX9 | 1.8e-26 | 83.56 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
