MELO3C030843 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030843
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr04: 26506413 .. 26506837 (-)
RNA-Seq Expression	MELO3C030843
Synteny	MELO3C030843

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTTCGAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGTAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGGGAGTAGGACCTATCGAGTGGATCCAAGAGGAAGAGAAGAAGTCAGCGAGACTTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCAAATGAAAACAATGTGCTTATGGAATTCTTCCACATATTGCGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGGTATTGCAAAGGCATCTTCTGTCTCGTATGGACGAACTTCGGGGTTTCGTACTCATGCCTAAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAAACATCACGAGATAG

mRNA sequence

ATGGGGGTTCGAAACGAGGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTCGTAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGGGAGTAGGACCTATCGAGTGGATCCAAGAGGAAGAGAAGAAGTCAGCGAGACTTGGATGTTGAAGGCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGATGATTGCGGAGTGGCCTGCACGCGCCCTTGCAAATGAAAACAATGTGCTTATGGAATTCTTCCACATATTGCGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGGTATTGCAAAGGCATCTTCTGTCTCGTATGGACGAACTTCGGGGTTTCGTACTCATGCCTAAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAAACATCACGAGATAG

Coding sequence (CDS)

ATGATTGCGGAGTGGCCTGCACGCGCCCTTGCAAATGAAAACAATGTGCTTATGGAATTCTTCCACATATTGCGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGGTATTGCAAAGGCATCTTCTGTCTCGTATGGACGAACTTCGGGGTTTCGTACTCATGCCTAAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAAACATCACGAGATAG

Protein sequence

MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDEREGFCRVLLRNITR

Homology

[Close]

BLAST of MELO3C030843 vs. NCBI nr
Match: KAA0053664.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00834.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.2e-32
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
          MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER
Sbjct: 1  MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60

Query: 61 EGFCRVLLRNITR 74
          EGFCRVLLRNITR
Sbjct: 61 EGFCRVLLRNITR 73

[Close]

BLAST of MELO3C030843 vs. NCBI nr
Match: KAA0049675.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12198.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 7.3e-27
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 2   IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
           IAEWPAR LAN+N+V  EFFHILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 211 IAEWPARTLANDNHVCTEFFHILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 270

Query: 62  GFCRVLLRNIT 73
           GFCRV+LR+IT
Sbjct: 271 GFCRVILRDIT 281

[Close]

BLAST of MELO3C030843 vs. NCBI nr
Match: KAA0045638.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 2   IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
           IAEWPAR LAN+N+V MEFF ILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 414 IAEWPARNLANDNHVRMEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 473

Query: 62  GFCRVLLRNITR 74
           GFCRVLLR+I R
Sbjct: 474 GFCRVLLRDIER 485

[Close]

BLAST of MELO3C030843 vs. NCBI nr
Match: TYK02619.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.6 bits (322), Expect = 2.1e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 2   IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
           IAEWPAR LAN+N+V MEFF ILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 414 IAEWPARNLANDNHVRMEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 473

Query: 62  GFCRVLLRNITR 74
           GFCRVLLR+I R
Sbjct: 474 GFCRVLLRDIER 485

[Close]

BLAST of MELO3C030843 vs. NCBI nr
Match: KAA0042465.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22911.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1   MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
           MIAEWP RALAN+N+V  EFFHILREMPELTSLDR +LQR+LLSRMD+LRGFVLMPKDER
Sbjct: 167 MIAEWPTRALANDNHVYTEFFHILREMPELTSLDRVLLQRNLLSRMDDLRGFVLMPKDER 226

Query: 61  EGFCRVLLRNITR 74
           EGFCRV L +ITR
Sbjct: 227 EGFCRVFLGDITR 239

[Close]

BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match: A0A5D3BNL9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00360 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 5.7e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
          MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER
Sbjct: 1  MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60

Query: 61 EGFCRVLLRNITR 74
          EGFCRVLLRNITR
Sbjct: 61 EGFCRVLLRNITR 73

[Close]

BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match: A0A5D3CM34 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001480 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.6e-27
Identity = 61/71 (85.92%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 2   IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
           IAEWPAR LAN+N+V  EFFHILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 211 IAEWPARTLANDNHVCTEFFHILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 270

Query: 62  GFCRVLLRNIT 73
           GFCRV+LR+IT
Sbjct: 271 GFCRVILRDIT 281

[Close]

BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match: A0A5D3BWV2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00270 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 2   IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
           IAEWPAR LAN+N+V MEFF ILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 414 IAEWPARNLANDNHVRMEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 473

Query: 62  GFCRVLLRNITR 74
           GFCRVLLR+I R
Sbjct: 474 GFCRVLLRDIER 485

[Close]

BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match: A0A5A7TS15 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001490 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.0e-26
Identity = 62/72 (86.11%), Postives = 68/72 (94.44%), Query Frame = 0


Query: 2   IAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDERE 61
           IAEWPAR LAN+N+V MEFF ILREMPELTSLDRA+LQRHLLSRMD+LRGFVLMP+DERE
Sbjct: 414 IAEWPARNLANDNHVRMEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDERE 473

Query: 62  GFCRVLLRNITR 74
           GFCRVLLR+I R
Sbjct: 474 GFCRVLLRDIER 485

[Close]

BLAST of MELO3C030843 vs. ExPASy TrEMBL
Match: A0A5D3DGX9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00520 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26
Identity = 61/73 (83.56%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1   MIAEWPARALANENNVLMEFFHILREMPELTSLDRAVLQRHLLSRMDELRGFVLMPKDER 60
           MIAEWP RALAN+N+V  EFFHILREMPELTSLDR +LQR+LLSRMD+LRGFVLMPKDER
Sbjct: 167 MIAEWPTRALANDNHVYTEFFHILREMPELTSLDRVLLQRNLLSRMDDLRGFVLMPKDER 226

Query: 61  EGFCRVLLRNITR 74
           EGFCRV L +ITR
Sbjct: 227 EGFCRVFLGDITR 239

The following BLAST results are available for this feature:

BLAST of MELO3C030843 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053664.1	1.2e-32	100.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK00834.1 retrotransposon p...	[more]
KAA0049675.1	7.3e-27	85.92	retrotransposon protein [Cucumis melo var. makuwa] >TYK12198.1 retrotransposon p...	[more]
KAA0045638.1	2.1e-26	86.11	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02619.1	2.1e-26	86.11	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042465.1	3.6e-26	83.56	retrotransposon protein [Cucumis melo var. makuwa] >TYK22911.1 retrotransposon p...	[more]

BLAST of MELO3C030843 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C030843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BNL9	5.7e-33	100.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CM34	3.6e-27	85.92	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BWV2	1.0e-26	86.11	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TS15	1.0e-26	86.11	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DGX9	1.8e-26	83.56	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C030843 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030843.1	MELO3C030843.1	mRNA