MELO3C030454 (gene) Melon (DHL92) v4

Overview


Name	MELO3C030454
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein FAR1-RELATED SEQUENCE 4
Location	chr11: 14901478 .. 14901944 (+)
RNA-Seq Expression	MELO3C030454
Synteny	MELO3C030454

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

atatctattaatcattccattccaaaagagattgtgcacaaggctcgtacaaatcttggagttaatataaattatcaaaaagcttggacggcaaagaacacatagtaaagatttaaaaggtgatatggttgaatcgtatacattgattccatgcttctttgataaattggttgaatttaacccaagtctgatcaattttgtataccaaatttaaattcatttatagatagatggggataaacaatatcacaatctatctagatagatagatatagcatatatcacaatttatctgttcttttttgttggtgctaatagaaatgttatgtaattattatagtacatgcactgctttagaaatggatgatagcgatcatttcaagtttttctttatggcttttggggcatcaattgaggggtggaaatattgtaaacctataatttatgttgattagacttttttaaag

mRNA sequence

atatctattaatcattccattccaaaagagattgtgcacaaggctcgtacaaatcttggagttaatataaattatcaaaaagcttggacggcaaagaacacatagtaaagatttaaaaggtgatatggttgaatcgtatacattgattccatgcttctttgataaattggttgaatttaacccaaaaatggatgatagcgatcatttcaagtttttctttatggcttttggggcatcaattgaggggtggaaatattgtaaacctataatttatgttgattagacttttttaaag

Coding sequence (CDS)

atggttgaatcgtatacattgattccatgcttctttgataaattggttgaatttaacccaaaaatggatgatagcgatcatttcaagtttttctttatggcttttggggcatcaattgaggggtggaaatattgtaaacctataatttatgttgattag

Protein sequence

MVESYTLIPCFFDKLVEFNPKMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD

Homology

[Close]

BLAST of MELO3C030454 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 2   VESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
           VESY LIP FFDKLVE NP      +MDDS HFKF FMAFGASIEGWKYCKPIIYVD
Sbjct: 62  VESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVD 118

[Close]

BLAST of MELO3C030454 vs. NCBI nr
Match: KAA0037812.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 2   VESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
           VESY LIP FFDKLVE NP      +MDDS HFKF FMAFGASIEGWKYCKPIIYVD
Sbjct: 62  VESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVD 118

[Close]

BLAST of MELO3C030454 vs. NCBI nr
Match: KAA0065300.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK24167.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 3  ESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
          ESY LIP FFDKLVE NP      +MDDS HFKFFFMAFGASIEGWKYC+P+I VD
Sbjct: 11 ESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFFFMAFGASIEGWKYCRPVISVD 66

[Close]

BLAST of MELO3C030454 vs. NCBI nr
Match: KAA0065849.1 (protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa] >TYK24057.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 8.7e-14
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   MVESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
           +VESY LIP FFDKLVE N       +MDD+ HFKFFFMAFGASIEGWKYC+PII VD
Sbjct: 61  IVESYALIPRFFDKLVESNQGTCTALEMDDNGHFKFFFMAFGASIEGWKYCRPIISVD 118

[Close]

BLAST of MELO3C030454 vs. NCBI nr
Match: TYK01612.1 (uncharacterized protein E5676_scaffold451G002110 [Cucumis melo var. makuwa])

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 2   VESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
           VESY LIP FFDKLVE NP      +MDD+ HFKF FMAFGASIEGWKYC+PII VD
Sbjct: 49  VESYVLIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMAFGASIEGWKYCRPIISVD 105

[Close]

BLAST of MELO3C030454 vs. ExPASy TrEMBL
Match: A0A5A7T2W2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00260 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 2   VESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
           VESY LIP FFDKLVE NP      +MDDS HFKF FMAFGASIEGWKYCKPIIYVD
Sbjct: 62  VESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVD 118

[Close]

BLAST of MELO3C030454 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 45/57 (78.95%), Postives = 46/57 (80.70%), Query Frame = 0


Query: 2   VESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
           VESY LIP FFDKLVE NP      +MDDS HFKF FMAFGASIEGWKYCKPIIYVD
Sbjct: 62  VESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFCFMAFGASIEGWKYCKPIIYVD 118

[Close]

BLAST of MELO3C030454 vs. ExPASy TrEMBL
Match: A0A5A7VDN9 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1425G00040 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.5e-15
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 3  ESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
          ESY LIP FFDKLVE NP      +MDDS HFKFFFMAFGASIEGWKYC+P+I VD
Sbjct: 11 ESYALIPRFFDKLVESNPGTCTALEMDDSGHFKFFFMAFGASIEGWKYCRPVISVD 66

[Close]

BLAST of MELO3C030454 vs. ExPASy TrEMBL
Match: A0A5A7VKK3 (Protein FAR-RED IMPAIRED RESPONSE 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00230 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.2e-14
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1   MVESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
           +VESY LIP FFDKLVE N       +MDD+ HFKFFFMAFGASIEGWKYC+PII VD
Sbjct: 61  IVESYALIPRFFDKLVESNQGTCTALEMDDNGHFKFFFMAFGASIEGWKYCRPIISVD 118

[Close]

BLAST of MELO3C030454 vs. ExPASy TrEMBL
Match: A0A5D3BS45 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002110 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.5e-14
Identity = 42/57 (73.68%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 2   VESYTLIPCFFDKLVEFNP------KMDDSDHFKFFFMAFGASIEGWKYCKPIIYVD 53
           VESY LIP FFDKLVE NP      +MDD+ HFKF FMAFGASIEGWKYC+PII VD
Sbjct: 49  VESYVLIPRFFDKLVESNPGTCTALEMDDNGHFKFCFMAFGASIEGWKYCRPIISVD 105

The following BLAST results are available for this feature:

BLAST of MELO3C030454 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C030454 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02872.1	2.1e-15	78.95	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0037812.1	2.1e-15	78.95	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0065300.1	1.7e-14	75.00	protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa] >TYK24167.1 prot...	[more]
KAA0065849.1	8.7e-14	72.41	protein FAR-RED IMPAIRED RESPONSE 1-like [Cucumis melo var. makuwa] >TYK24057.1 ...	[more]
TYK01612.1	1.1e-13	73.68	uncharacterized protein E5676_scaffold451G002110 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C030454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2W2	1.0e-15	78.95	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BVN2	1.0e-15	78.95	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7VDN9	8.5e-15	75.00	Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VKK3	4.2e-14	72.41	Protein FAR-RED IMPAIRED RESPONSE 1-like OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BS45	5.5e-14	73.68	MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of MELO3C030454 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030454.1	MELO3C030454.1	mRNA