MELO3C029916 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029916
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein FAR1-RELATED SEQUENCE 4
Location	chr03: 9654104 .. 9655080 (-)
RNA-Seq Expression	MELO3C029916
Synteny	MELO3C029916

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTGAATATAGGTTCTTCTTTTTCTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTCTGATTTGAAGGAAAAAAGTTTATTTGAAAGTAAACAAGTGCTTTCAAAGTGTTTTTGCATAATAGCAATGAAGGACCAACTTTCAATTTAGGACTACAGTATCAAATTTGAGGTCTCTTGAATTTAGATGTCTGCAAGAAGGCTGCAAAAAATATGTTAGGGCTTCTCGTTATCAGAAGAGTGATTTGTGGATGCTACGAAAATACACTTCTGACCATGATTGTTCATTGAGTACTACCCAAAGTTCTCACATGCAAGCATCTTAAACAGTAATTGACAATTGTTTGGTAGATGATTTTAGATTCATGTCTACTTATTGTTCCATTCCTAAAGTGATTGTGCATAAAGCTCGTACAAATCTTAGAGTTAATATAAGTTACCAAAAAGCATAGAAGACGAAAGAACATATGGTAAAGATACTACAAGGTGACGCAGTTGAATTGTATGCATTAATTCCAAGTTTCTTTGATAAATTGGTTGAATCTAACTCCGGTATGATCAGTTTATATATCAAATTTAAATTTATTTGCAAATAGATGTGGATAGACTAATATCATAGTCTATATAGATAGACAAATATTAGAATCTATCACATTCTTTCTGTTCTTTTTTGTTTGTGCTTATAGAAGTGTATTTTTAATTATTATCGGTACATGCATTGCTTTATAAATGGATGATAGTGGTCATTTCAAGTTTTTCTTTATGGCTTTTTGTGCATCAATTCAGGGGTGGAAATACTATAGGCCTATTATTTTTATTGATGGGACATTTTTGAAGTGTAAGTTTGGTAGCATCCTATTAATAGCCTCATCACAAGATGGTAACAATCAAACCTTCCCTTTTGCTTTTGCCATTATAGATTCTGAAAATGATGTATCATGAACATGGTCTTTTTAGAAGATACGA

mRNA sequence

ATGTCACTGAATATAGGTTCTTCTTTTTCTGTTTCAAATGATGAAGTTATAAGAGACATCTCTTATTATTCTGATTTGAAGGAAAAAAGTTTATTTGAAAGTAAACAAGTGCTTTCAAAGTGTTTTTGCATAATAGCAATGAAGGACCAACTTTCAATTTAGGACTACAGTATCAAATTTGAGGTCTCTTGAATTTAGATGTCTGCAAGAAGGCTGCAAAAAATATGTTAGGGCTTCTCGTTATCAGAAGAGTGATTTGTGGATGCTACGAAAATACACTTCTGACCATGATTGTTCATTGAGTACTACCCAAAGTTCTCACATATTCATGTCTACTTATTGTTCCATTCCTAAAGTGATTGTGCATAAAGCTCGTACAAATCTTAGAGTTAATATAAGTTACCAAAAAGCATAGAAGACGAAAGAACATATGGTAAAGATACTACAAGGTGACGCAGTTGAATTGTATGCATTAATTCCAAGTTTCTTTGATAAATTGGTTGAATCTAACTCCGGTACATGCATTGCTTTATAAATGGATGATAGTGGTCATTTCAAGTTTTTCTTTATGGCTTTTTGTGCATCAATTCAGGGGTGGAAATACTATAGGCCTATTATTTTTATTGATGGGACATTTTTGAAGTGTAAGTTTGGTAGCATCCTATTAATAGCCTCATCACAAGATGGTAACAATCAAACCTTCCCTTTTGCTTTTGCCATTATAGATTCTGAAAATGATGTATCATGAACATGGTCTTTTTAGAAGATACGA

Coding sequence (CDS)

ATGGATGATAGTGGTCATTTCAAGTTTTTCTTTATGGCTTTTTGTGCATCAATTCAGGGGTGGAAATACTATAGGCCTATTATTTTTATTGATGGGACATTTTTGAAGTGTAAGTTTGGTAGCATCCTATTAATAGCCTCATCACAAGATGGTAACAATCAAACCTTCCCTTTTGCTTTTGCCATTATAGATTCTGAAAATGATGTATCATGA

Protein sequence

MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAIIDSENDVS

Homology

[Close]

BLAST of MELO3C029916 vs. NCBI nr
Match: TYK02872.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDDSGHFKF FMAF ASI+GWKY +PII++DG FLKCKFG ILL ASSQDGNNQ FP AF
Sbjct: 88  MDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLKCKFGGILLTASSQDGNNQIFPLAF 147

Query: 61  AIIDSENDVS 71
            I+DS+NDVS
Sbjct: 148 TIVDSKNDVS 157

[Close]

BLAST of MELO3C029916 vs. NCBI nr
Match: KAA0036500.1 (protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] >TYJ99981.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 2.8e-23
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDDSGHFKF FMAF ASI+ WKY  PII IDGTFLKCKFG ILL ASSQDGNNQ FP AF
Sbjct: 88  MDDSGHFKFCFMAFGASIERWKYCIPIISIDGTFLKCKFGDILLTASSQDGNNQIFPLAF 147

Query: 61  AIIDSENDVS 71
           AI+DSENDVS
Sbjct: 148 AIVDSENDVS 157

[Close]

BLAST of MELO3C029916 vs. NCBI nr
Match: KAA0040149.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDDSGHFKF FMAF ASI+GWKY RPII +DGTFLKCKFG I L ASSQD NNQ FP AF
Sbjct: 36  MDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLKCKFGGIPLTASSQDSNNQIFPLAF 95

Query: 61  AIIDSENDVS 71
           AI+DSEND S
Sbjct: 96  AIVDSENDAS 105

[Close]

BLAST of MELO3C029916 vs. NCBI nr
Match: TYK14840.1 (protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 4.7e-23
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDDSGHFKF FMAF ASI+GWKY RPII +DGTFLKCKFG I L ASSQD NNQ FP AF
Sbjct: 140 MDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLKCKFGGIPLTASSQDSNNQIFPLAF 199

Query: 61  AIIDSENDVS 71
           AI+DSEND S
Sbjct: 200 AIVDSENDAS 209

[Close]

BLAST of MELO3C029916 vs. NCBI nr
Match: TYK01612.1 (uncharacterized protein E5676_scaffold451G002110 [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 8.1e-23
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDD+GHFKF FMAF ASI+GWKY RPII +D TFLKCKFG ILL  SSQDGNNQ FP AF
Sbjct: 75  MDDNGHFKFCFMAFGASIEGWKYCRPIISVDETFLKCKFGGILLTTSSQDGNNQIFPLAF 134

Query: 61  AIIDSENDVS 71
           AI+DSEND S
Sbjct: 135 AIVDSENDAS 144

[Close]

BLAST of MELO3C029916 vs. ExPASy TrEMBL
Match: A0A5D3BVN2 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold968G00010 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDDSGHFKF FMAF ASI+GWKY +PII++DG FLKCKFG ILL ASSQDGNNQ FP AF
Sbjct: 88  MDDSGHFKFCFMAFGASIEGWKYCKPIIYVDGKFLKCKFGGILLTASSQDGNNQIFPLAF 147

Query: 61  AIIDSENDVS 71
            I+DS+NDVS
Sbjct: 148 TIVDSKNDVS 157

[Close]

BLAST of MELO3C029916 vs. ExPASy TrEMBL
Match: A0A5D3BMN4 (Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00260 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.3e-23
Identity = 58/70 (82.86%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDDSGHFKF FMAF ASI+ WKY  PII IDGTFLKCKFG ILL ASSQDGNNQ FP AF
Sbjct: 88  MDDSGHFKFCFMAFGASIERWKYCIPIISIDGTFLKCKFGDILLTASSQDGNNQIFPLAF 147

Query: 61  AIIDSENDVS 71
           AI+DSENDVS
Sbjct: 148 AIVDSENDVS 157

[Close]

BLAST of MELO3C029916 vs. ExPASy TrEMBL
Match: A0A5D3CTS7 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00040 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDDSGHFKF FMAF ASI+GWKY RPII +DGTFLKCKFG I L ASSQD NNQ FP AF
Sbjct: 140 MDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLKCKFGGIPLTASSQDSNNQIFPLAF 199

Query: 61  AIIDSENDVS 71
           AI+DSEND S
Sbjct: 200 AIVDSENDAS 209

[Close]

BLAST of MELO3C029916 vs. ExPASy TrEMBL
Match: A0A5A7TFW3 (Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2764G00030 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.3e-23
Identity = 56/70 (80.00%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDDSGHFKF FMAF ASI+GWKY RPII +DGTFLKCKFG I L ASSQD NNQ FP AF
Sbjct: 36  MDDSGHFKFCFMAFGASIEGWKYCRPIISVDGTFLKCKFGGIPLTASSQDSNNQIFPLAF 95

Query: 61  AIIDSENDVS 71
           AI+DSEND S
Sbjct: 96  AIVDSENDAS 105

[Close]

BLAST of MELO3C029916 vs. ExPASy TrEMBL
Match: A0A5D3BS45 (MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G002110 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1   MDDSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAF 60
           MDD+GHFKF FMAF ASI+GWKY RPII +D TFLKCKFG ILL  SSQDGNNQ FP AF
Sbjct: 75  MDDNGHFKFCFMAFGASIEGWKYCRPIISVDETFLKCKFGGILLTTSSQDGNNQIFPLAF 134

Query: 61  AIIDSENDVS 71
           AI+DSEND S
Sbjct: 135 AIVDSENDAS 144

[Close]

BLAST of MELO3C029916 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 50.1 bits (118), Expect = 8.6e-07
Identity = 26/56 (46.43%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 7   FKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAI 63
           F+  F AF  SIQG+++ RP+I +D   L  K+   L+IAS+ D  NQ FP AFA+
Sbjct: 361 FRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAV 416

[Close]

BLAST of MELO3C029916 vs. TAIR 10
Match: AT1G64255.1 (MuDR family transposase )

HSP 1 Score: 48.5 bits (114), Expect = 2.5e-06
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 0


Query: 11  FMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAI 63
           F AF  SI+G+++ RP+I +D   L C++   L+IAS  D  N+ FP AFA+
Sbjct: 369 FWAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAV 420

[Close]

BLAST of MELO3C029916 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 47.4 bits (111), Expect = 5.6e-06
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 0


Query: 3   DSGHFKFFFMAFCASIQGWKYYRPIIFIDGTFLKCKFGSILLIASSQDGNNQTFPFAFAI 62
           D   F+  F +F  SI+G+++ RP+I +D   L  K+   L+IAS  D  N+ FP AFA+
Sbjct: 354 DFASFRGVFWSFSQSIEGFQHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAV 413

The following BLAST results are available for this feature:

BLAST of MELO3C029916 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02872.1	1.2e-23	78.57	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]	[more]
KAA0036500.1	2.8e-23	82.86	protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa] >TYJ99981.1 protein F...	[more]
KAA0040149.1	4.7e-23	80.00	protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]	[more]
TYK14840.1	4.7e-23	80.00	protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]	[more]
TYK01612.1	8.1e-23	78.57	uncharacterized protein E5676_scaffold451G002110 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C029916 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029916 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BVN2	6.0e-24	78.57	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BMN4	1.3e-23	82.86	Protein FAR1-RELATED SEQUENCE 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CTS7	2.3e-23	80.00	Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7TFW3	2.3e-23	80.00	Protein FAR1-RELATED SEQUENCE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BS45	3.9e-23	78.57	MULE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of MELO3C029916 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49920.1	8.6e-07	46.43	MuDR family transposase	[more]
AT1G64255.1	2.5e-06	44.23	MuDR family transposase	[more]
AT1G64260.1	5.6e-06	40.00	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018289	MULE transposase domain	PFAM	PF10551	MULE	coord: 27..68 e-value: 6.5E-7 score: 29.7
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 3..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029916.1	MELO3C029916.1	mRNA