MELO3C029279 (gene) Melon (DHL92) v4

Overview


Name	MELO3C029279
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	glucan endo-1,3-beta-glucosidase 4
Location	chr02: 215645 .. 216342 (-)
RNA-Seq Expression	MELO3C029279
Synteny	MELO3C029279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATGGAAGTCCTCCTGGTGCATTTAACACAGACAATCCAGCTTCGAGCATAGGCAGCACAACAGGGTTTGGAACTGAGATCCCTCCAAGCTCAAGCACTTCAATATCCATAGCGGCTGGATTGAGACCCTTTACTTGCTTCATCATTCTCACCATGTCCTTCATCACTCACAGAATAATCACTCTGGACTGATGATGAAATGAAATCACCGACTTCTCCTTCTACTGTACATGAAAAGGCCCTCGTTATTCATAGCTTCAGAATCGTCGCCCAGTTCCACCATTAGTGCAATTTTTGGAGGAGAAAAAGGAACCAGAGGTGAGTTTGAGTTTGGAAGGATAAACCACTGCCACTGCCCTGCTTGAGCTTTTGTTTGTGTAAAGATCAAAGATAGGGATGTATTAGTATTAGCTACTTCCAACTTGAGACTCTGTAATATAATATAATGTTTGTTAGATTTCGGGACTTGTCTTGCTGTTGATCATTGTGCATTAAGATTAAAATTTTAGTTAGAAGAAACAGAGACACATAACTCGACTTGGAAGTATTTCTGTTCCTATGTTTAAGTCTTGAATGTTTTTTATGGGTTAATGATTAATTTATTGTTTATTTACGTATGAGTTGCAATTGCATGATGAGCTGTTGCTGAACTTTCGTGTGAAATTATATTAGTTAACTTGCTCTTCTCCATCCAGT

mRNA sequence

GAAATGGAAGTCCTCCTGGTGCATTTAACACAGACAATCCAGCTTCGAGCATAGGCAGCACAACAGGGTTTGGAACTGAGATCCCTCCAAGCTCAAGCACTTCAATATCCATAGCGGCTGGATTGAGACCCTTTACTTGCTTCATCATTCTCACCATGTCCTTCATCACTCACAGAATAATCACTCTGGACTGATGATGAAATGAAATCACCGACTTCTCCTTCTACTGTACATGAAAAGGCCCTCGTTATTCATAGCTTCAGAATCGTCGCCCAGTTCCACCATTAGTGCAATTTTTGGAGGAGAAAAAGGAACCAGAGGTGAGTTTGAGTTTGGAAGGATAAACCACTGCCACTGCCCTGCTTGAGCTTTTGTTTGTGTAAAGATCAAAGATAGGGATGTATTAGTATTAGCTACTTCCAACTTGAGACTCTGTAATATAATATAATGTTTGTTAGATTTCGGGACTTGTCTTGCTGTTGATCATTGTGCATTAAGATTAAAATTTTAGTTAGAAGAAACAGAGACACATAACTCGACTTGGAAGTATTTCTGTTCCTATGTTTAAGTCTTGAATGTTTTTTATGGGTTAATGATTAATTTATTGTTTATTTACGTATGAGTTGCAATTGCATGATGAGCTGTTGCTGAACTTTCGTGTGAAATTATATTAGTTAACTTGCTCTTCTCCATCCAGT

Coding sequence (CDS)

AATGGAAGTCCTCCTGGTGCATTTAACACAGACAATCCAGCTTCGAGCATAGGCAGCACAACAGGGTTTGGAACTGAGATCCCTCCAAGCTCAAGCACTTCAATATCCATAGCGGCTGGATTGAGACCCTTTACTTGCTTCATCATTCTCACCATGTCCTTCATCACTCACAGAATAATCACTCTGGACTGA

Protein sequence

NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRIITLD

Homology

[Close]

BLAST of MELO3C029279 vs. NCBI nr
Match: XP_008450517.1 (PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Cucumis melo] >KAA0050964.1 glucan endo-1,3-beta-glucosidase 4 [Cucumis melo var. makuwa] >TYK10310.1 glucan endo-1,3-beta-glucosidase 4 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII
Sbjct: 300 NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 359

Query: 61  TLD 64
           TLD
Sbjct: 360 TLD 362

[Close]

BLAST of MELO3C029279 vs. NCBI nr
Match: KGN66453.2 (hypothetical protein Csa_007420 [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NGSPPG FNTDNPASSIGSTTGFGTEIPPSSSTSIS+AAGLRPFTCFIILTMSFITHRII
Sbjct: 287 NGSPPGVFNTDNPASSIGSTTGFGTEIPPSSSTSISVAAGLRPFTCFIILTMSFITHRII 346

Query: 61  TLD 64
           TLD
Sbjct: 347 TLD 349

[Close]

BLAST of MELO3C029279 vs. NCBI nr
Match: XP_004135574.1 (mucin-5AC [Cucumis sativus])

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-23
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NGSPPG FNTDNPASSIGSTTGFGTEIPPSSSTSIS+AAGLRPFTCFIILTMSFITHRII
Sbjct: 300 NGSPPGVFNTDNPASSIGSTTGFGTEIPPSSSTSISVAAGLRPFTCFIILTMSFITHRII 359

Query: 61  TLD 64
           TLD
Sbjct: 360 TLD 362

[Close]

BLAST of MELO3C029279 vs. NCBI nr
Match: XP_038879241.1 (mucin-2 isoform X1 [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NGSPPG FNTDNPASSIGSTTGFGTEIPPSSSTSIS+AAGLRPFTC IILT+S IT  II
Sbjct: 303 NGSPPGVFNTDNPASSIGSTTGFGTEIPPSSSTSISMAAGLRPFTCCIILTISLITRLII 362

Query: 61  TLD 64
           TLD
Sbjct: 363 TLD 365

[Close]

BLAST of MELO3C029279 vs. NCBI nr
Match: XP_038879242.1 (mucin-2 isoform X2 [Benincasa hispida])

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NGSPPG FNTDNPASSIGSTTGFGTEIPPSSSTSIS+AAGLRPFTC IILT+S IT  II
Sbjct: 297 NGSPPGVFNTDNPASSIGSTTGFGTEIPPSSSTSISMAAGLRPFTCCIILTISLITRLII 356

Query: 61  TLD 64
           TLD
Sbjct: 357 TLD 359

[Close]

BLAST of MELO3C029279 vs. ExPASy TrEMBL
Match: A0A5A7U6N8 (Glucan endo-1,3-beta-glucosidase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004640 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII
Sbjct: 300 NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 359

Query: 61  TLD 64
           TLD
Sbjct: 360 TLD 362

[Close]

BLAST of MELO3C029279 vs. ExPASy TrEMBL
Match: A0A1S3BQE9 (glucan endo-1,3-beta-glucosidase 4 OS=Cucumis melo OX=3656 GN=LOC103492098 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.9e-24
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII
Sbjct: 300 NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 359

Query: 61  TLD 64
           TLD
Sbjct: 360 TLD 362

[Close]

BLAST of MELO3C029279 vs. ExPASy TrEMBL
Match: A0A0A0M1B6 (Hydrolase, hydrolyzing O-glycosyl compounds OS=Cucumis sativus OX=3659 GN=Csa_1G560700 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.1e-24
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NGSPPG FNTDNPASSIGSTTGFGTEIPPSSSTSIS+AAGLRPFTCFIILTMSFITHRII
Sbjct: 300 NGSPPGVFNTDNPASSIGSTTGFGTEIPPSSSTSISVAAGLRPFTCFIILTMSFITHRII 359

Query: 61  TLD 64
           TLD
Sbjct: 360 TLD 362

[Close]

BLAST of MELO3C029279 vs. ExPASy TrEMBL
Match: A0A6J1HC94 (mucin-2 OS=Cucurbita moschata OX=3662 GN=LOC111462029 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRI 60
           NG+PP  FN DNPASSIGS+TGFGTEIPPSSSTSIS+AAGLRPFT  II+TMS IT RI
Sbjct: 302 NGTPPAVFNPDNPASSIGSSTGFGTEIPPSSSTSISMAAGLRPFTWCIIMTMSLITRRI 360

[Close]

BLAST of MELO3C029279 vs. ExPASy TrEMBL
Match: A0A6J1HUD2 (mucin-2 OS=Cucurbita maxima OX=3661 GN=LOC111467890 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 4.6e-15
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 1   NGSPPGAFNTDNPASSIGSTTGFGTEIPPSSSTSISIAAGLRPFTCFIILTMSFITHRII 60
           NG+PP  FN DNP+SSIGS+TGFGTEIPPSSSTSIS+AAGLRPFT  II+TMS IT RII
Sbjct: 302 NGTPPAIFNPDNPSSSIGSSTGFGTEIPPSSSTSISMAAGLRPFTWCIIMTMSLITRRII 361

The following BLAST results are available for this feature:

BLAST of MELO3C029279 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450517.1	3.8e-24	100.00	PREDICTED: glucan endo-1,3-beta-glucosidase 4 [Cucumis melo] >KAA0050964.1 gluca...	[more]
KGN66453.2	1.5e-23	96.83	hypothetical protein Csa_007420 [Cucumis sativus]	[more]
XP_004135574.1	1.5e-23	96.83	mucin-5AC [Cucumis sativus]	[more]
XP_038879241.1	1.7e-19	88.89	mucin-2 isoform X1 [Benincasa hispida]	[more]
XP_038879242.1	1.7e-19	88.89	mucin-2 isoform X2 [Benincasa hispida]	[more]

BLAST of MELO3C029279 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C029279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6N8	1.9e-24	100.00	Glucan endo-1,3-beta-glucosidase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BQE9	1.9e-24	100.00	glucan endo-1,3-beta-glucosidase 4 OS=Cucumis melo OX=3656 GN=LOC103492098 PE=4 ...	[more]
A0A0A0M1B6	7.1e-24	96.83	Hydrolase, hydrolyzing O-glycosyl compounds OS=Cucumis sativus OX=3659 GN=Csa_1G...	[more]
A0A6J1HC94	3.5e-15	81.36	mucin-2 OS=Cucurbita moschata OX=3662 GN=LOC111462029 PE=4 SV=1	[more]
A0A6J1HUD2	4.6e-15	80.00	mucin-2 OS=Cucurbita maxima OX=3661 GN=LOC111467890 PE=4 SV=1	[more]

BLAST of MELO3C029279 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029279.1	MELO3C029279.1	mRNA