MELO3C028779 (gene) Melon (DHL92) v4

Overview
NameMELO3C028779
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
Descriptiondisease resistance protein RGA2-like
Locationchr04: 28077229 .. 28077626 (+)
RNA-Seq ExpressionMELO3C028779
SyntenyMELO3C028779
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCATCGTATCATTTGAAATTGAGGAGTTAAAAAAAAAGAGAGAAATATGGCTGAATTTCTTTGGACTTTTGCTGTTCAGGAAGTCCTAAAGAAGATCGTGAAATTTGGAGCACAGCAAATTGGGTTAGCATGGGGGTTGAAGAAGAAGAAGCTGTCCAATTTGAGACATTAACAGAAAGAAGTTACATATCGATTCTGGGAGGCTATGGGTGAAAGAACTTCAAGATATTGCCTACGAAGCTGATGATCTACTGAATGAGCTTGTTTATGAAGATCTTCGAAGAACTGCGGAACAAACTGAGGTACGTGATTTTATTTCCATCTCACCATCCAAAAATCCCTTTTTGTTTCGTTGCGAGAAGGCCAAGAAAATGAAGAACACTACTCAAACTTTATA

mRNA sequence

TTCATCGTATCATTTGAAATTGAGGAGTTAAAAAAAAAGAGAGAAATATGGCTGAATTTCTTTGGACTTTTGCTGTTCAGGAAGTCCTAAAGAAGATCGTGAAATTTGGAGCACAGCAAATTGGGTTAGCATGGGGGTTGAAGAAGAAGAAGCTGTCCAATTTGAGACATTAACAGAAAGAAGTTACATATCGATTCTGGGAGGCTATGGGTGAAAGAACTTCAAGATATTGCCTACGAAGCTGATGATCTACTGAATGAGCTTGTTTATGAAGATCTTCGAAGAACTGCGGAACAAACTGAGGTACGTGATTTTATTTCCATCTCACCATCCAAAAATCCCTTTTTGTTTCGTTGCGAGAAGGCCAAGAAAATGAAGAACACTACTCAAACTTTATA

Coding sequence (CDS)

ATGGCTGAATTTCTTTGGACTTTTGCTGTTCAGGAAGTCCTAAAGAAGATCGTGAAATTTGGAGCACAGCAAATTGGGTTAGCATGGGGGTTGAAGAAGAAGAAGCTGTCCAATTTGAGACATTAA

Protein sequence

MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNLRH
Homology
BLAST of MELO3C028779 vs. NCBI nr
Match: KAA0062827.1 (putative disease resistance protein RGA3 [Cucumis melo var. makuwa] >TYJ96722.1 putative disease resistance protein RGA3 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 8.3e-12
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNLRH 42
          M EFLWTFAVQEVLKKIVKFGAQQIGLAWGL+KKKLSNLR+
Sbjct: 1  MGEFLWTFAVQEVLKKIVKFGAQQIGLAWGLEKKKLSNLRN 41

BLAST of MELO3C028779 vs. NCBI nr
Match: KAA0045131.1 (putative disease resistance protein RGA3 [Cucumis melo var. makuwa] >TYK23606.1 putative disease resistance protein RGA3 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 7.1e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNLRH 42
          MAEFLWTF VQEVLKKIVKFGAQQI LAWGL+KKKLSNLR+
Sbjct: 1  MAEFLWTFVVQEVLKKIVKFGAQQIRLAWGLEKKKLSNLRN 41

BLAST of MELO3C028779 vs. NCBI nr
Match: XP_038877687.1 (putative disease resistance protein RGA1 [Benincasa hispida] >XP_038877688.1 putative disease resistance protein RGA1 [Benincasa hispida])

HSP 1 Score: 68.2 bits (165), Expect = 1.9e-08
Identity = 34/41 (82.93%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNLRH 42
          MAEFLWTFAVQEVLKKIVKFGA+QIGLAWGL +K++S LR+
Sbjct: 1  MAEFLWTFAVQEVLKKIVKFGAEQIGLAWGL-EKEVSQLRN 40

BLAST of MELO3C028779 vs. NCBI nr
Match: XP_038877689.1 (putative disease resistance protein RGA3 [Benincasa hispida])

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-07
Identity = 29/35 (82.86%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKK 36
          MAEFLWTFAVQE+LKKIVKFGA+QIG+AWGL+K++
Sbjct: 1  MAEFLWTFAVQEILKKIVKFGAEQIGVAWGLEKEE 35

BLAST of MELO3C028779 vs. NCBI nr
Match: XP_004140442.1 (disease resistance protein RGA2 [Cucumis sativus] >KGN50811.1 hypothetical protein Csa_018865 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.6e-07
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNLR 41
          MAEFLWTFAVQEVLKKIV FGA+QI LAWGL +K+LS+L+
Sbjct: 1  MAEFLWTFAVQEVLKKIVNFGAEQISLAWGL-EKELSHLK 39

BLAST of MELO3C028779 vs. ExPASy TrEMBL
Match: A0A5D3BA29 (Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00100 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-12
Identity = 38/41 (92.68%), Postives = 40/41 (97.56%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNLRH 42
          M EFLWTFAVQEVLKKIVKFGAQQIGLAWGL+KKKLSNLR+
Sbjct: 1  MGEFLWTFAVQEVLKKIVKFGAQQIGLAWGLEKKKLSNLRN 41

BLAST of MELO3C028779 vs. ExPASy TrEMBL
Match: A0A5A7TUD7 (Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G001180 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.4e-11
Identity = 37/41 (90.24%), Postives = 39/41 (95.12%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNLRH 42
          MAEFLWTF VQEVLKKIVKFGAQQI LAWGL+KKKLSNLR+
Sbjct: 1  MAEFLWTFVVQEVLKKIVKFGAQQIRLAWGLEKKKLSNLRN 41

BLAST of MELO3C028779 vs. ExPASy TrEMBL
Match: A0A0A0KST5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266890 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.8e-07
Identity = 32/40 (80.00%), Postives = 37/40 (92.50%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNLR 41
          MAEFLWTFAVQEVLKKIV FGA+QI LAWGL +K+LS+L+
Sbjct: 1  MAEFLWTFAVQEVLKKIVNFGAEQISLAWGL-EKELSHLK 39

BLAST of MELO3C028779 vs. ExPASy TrEMBL
Match: A0A0A0KXG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016460 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-07
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKKKLSNL 40
          MAEFLWTFAVQEVLKK++K  A QIGLAWGL  K+LSNL
Sbjct: 1  MAEFLWTFAVQEVLKKVLKLAADQIGLAWGL-DKELSNL 38

BLAST of MELO3C028779 vs. ExPASy TrEMBL
Match: A0A6J1CVR6 (putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC111014685 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-07
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 0

Query: 1  MAEFLWTFAVQEVLKKIVKFGAQQIGLAWGLKKK 35
          MAEFLWTFAVQEVL+KIVK  AQQIGLAWGL+K+
Sbjct: 1  MAEFLWTFAVQEVLRKIVKVAAQQIGLAWGLEKE 34

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0062827.18.3e-1292.68putative disease resistance protein RGA3 [Cucumis melo var. makuwa] >TYJ96722.1 ... [more]
KAA0045131.17.1e-1190.24putative disease resistance protein RGA3 [Cucumis melo var. makuwa] >TYK23606.1 ... [more]
XP_038877687.11.9e-0882.93putative disease resistance protein RGA1 [Benincasa hispida] >XP_038877688.1 put... [more]
XP_038877689.11.2e-0782.86putative disease resistance protein RGA3 [Benincasa hispida][more]
XP_004140442.13.6e-0780.00disease resistance protein RGA2 [Cucumis sativus] >KGN50811.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BA294.0e-1292.68Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7TUD73.4e-1190.24Putative disease resistance protein RGA3 OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A0A0KST51.8e-0780.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266890 PE=4 SV=1[more]
A0A0A0KXG98.7e-0779.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G016460 PE=4 SV=1[more]
A0A6J1CVR68.7e-0785.29putative disease resistance protein RGA3 OS=Momordica charantia OX=3673 GN=LOC11... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C028779.1MELO3C028779.1mRNA