MELO3C025961 (gene) Melon (DHL92) v4

Overview


Name	MELO3C025961
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Unknown protein
Location	chr11: 13506632 .. 13507711 (+)
RNA-Seq Expression	MELO3C025961
Synteny	MELO3C025961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTTGAGTTATTTGAACCACCAAAAAAGTACTTATGGGTTCATAGAACCACAATGTAGTGATTGAAATGTCACCACAAACGCAAAGGAAAGATGAAGATGGGGCCTTTGGGCTTGGCTGTCATATGCATCGGCTAATATGAGCAAATATCATTGCCACAACATTCATATCCAAATCTCTTGTGTGGACTTGGCAAAAGAGCTTCAAGAATACTTCATATCCGAATCTCTTGTGCGATCCTCAACAAACACAGCAGTCACTAATTCAACAATGGCCGCAAAATTCCCTCTTTCTTCTTCCCTTACCGTCAAATTTCCTCTCCAACAAAACCCTTCTTCTTCCTTCTTCCCTCCTCTTCCTTCCCCTTTCTCCTCGCCAAAGCTTAGGCCAACGCCTTCTTCTCGCTTCAAGCTTCTAGCAAATTTAGGTAAAAAAGAGCATTTACTTTTGCTTAGATCTGCGACTCATTCTTGCTGTGCTTTTGTGTATATATATTGATGCCTTTTATTTATAGGGGGTGGCGATGCAGAAATCAAGAAGGGAGGGAAGAAAAAATTTATAACTAAAGAAGAGGAACCAGAGCAGTAAACAATTTTTTTCCCTTTTCTGTTTTCCTTTTTCTGGTATCAGAATGTTCAACAATTTGAGTGGAAATACAAGAAGATAATTATCAAATACCAAGCTCAAAATCTGATTGGATTTGGTGGTGTAGGTATTGGCAAACAGCAGGGGAAAGGGAAGGGGAGAATCCTATGAAGACTCCTCTTCCTTATATCATCATCTTCGGTATGTCGACTCCGTTCGTGATCTTAGCCATAGCTTTCGCCAATGGTTGGGTTAAAGTTCCTGTGAGATGAATCTGTACAAACTCATTGTGCAAATGCAAATGCCAAGGGAACAACACCATGAGAGTAACCTGAGATCTTCCACAGCGCACAAAACCCTCTGTTTATGCCTGTTTTGAGTTGTAATGTTATTTCAGAAGCTAATACAAAGTATAGTAACTCAGTTCCTTTTCGTTGTTTTGTGTGTTTGGATTCTTTATACCTCCATTTCAATACAAGTATTTGTTGTTGGTA

mRNA sequence

CTTCTTGAGTTATTTGAACCACCAAAAAAGTACTTATGGGTTCATAGAACCACAATGTAGTGATTGAAATGTCACCACAAACGCAAAGGAAAGATGAAGATGGGGCCTTTGGGCTTGGCTGTCATATGCATCGGCTAATATGAGCAAATATCATTGCCACAACATTCATATCCAAATCTCTTGTGTGGACTTGGCAAAAGAGCTTCAAGAATACTTCATATCCGAATCTCTTGTGCGATCCTCAACAAACACAGCAGTCACTAATTCAACAATGGCCGCAAAATTCCCTCTTTCTTCTTCCCTTACCGTCAAATTTCCTCTCCAACAAAACCCTTCTTCTTCCTTCTTCCCTCCTCTTCCTTCCCCTTTCTCCTCGCCAAAGCTTAGGCCAACGCCTTCTTCTCGCTTCAAGCTTCTAGCAAATTTAGGGGGTGGCGATGCAGAAATCAAGAAGGGAGGGAAGAAAAAATTTATAACTAAAGAAGAGGAACCAGAGCAGTAAACAATTTTTTTCCCTTTTCTGTTTTCCTTTTTCTGGTATCAGAATGTTCAACAATTTGAGTGGAAATACAAGAAGATAATTATCAAATACCAAGCTCAAAATCTGATTGGATTTGGTGGTGTAGGTATTGGCAAACAGCAGGGGAAAGGGAAGGGGAGAATCCTATGAAGACTCCTCTTCCTTATATCATCATCTTCGGTATGTCGACTCCGTTCGTGATCTTAGCCATAGCTTTCGCCAATGGTTGGGTTAAAGTTCCTGTGAGATGAATCTGTACAAACTCATTGTGCAAATGCAAATGCCAAGGGAACAACACCATGAGAGTAACCTGAGATCTTCCACAGCGCACAAAACCCTCTGTTTATGCCTGTTTTGAGTTGTAATGTTATTTCAGAAGCTAATACAAAGTATAGTAACTCAGTTCCTTTTCGTTGTTTTGTGTGTTTGGATTCTTTATACCTCCATTTCAATACAAGTATTTGTTGTTGGTA

Coding sequence (CDS)

ATGAGCAAATATCATTGCCACAACATTCATATCCAAATCTCTTGTGTGGACTTGGCAAAAGAGCTTCAAGAATACTTCATATCCGAATCTCTTGTGCGATCCTCAACAAACACAGCAGTCACTAATTCAACAATGGCCGCAAAATTCCCTCTTTCTTCTTCCCTTACCGTCAAATTTCCTCTCCAACAAAACCCTTCTTCTTCCTTCTTCCCTCCTCTTCCTTCCCCTTTCTCCTCGCCAAAGCTTAGGCCAACGCCTTCTTCTCGCTTCAAGCTTCTAGCAAATTTAGGGGGTGGCGATGCAGAAATCAAGAAGGGAGGGAAGAAAAAATTTATAACTAAAGAAGAGGAACCAGAGCAGTAA

Protein sequence

MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ

Homology

[Close]

BLAST of MELO3C025961 vs. NCBI nr
Match: XP_008464165.1 (PREDICTED: uncharacterized protein LOC103502113 [Cucumis melo] >KAA0060798.1 uncharacterized protein E6C27_scaffold137G00170 [Cucumis melo var. makuwa] >TYK11961.1 uncharacterized protein E5676_scaffold177G001450 [Cucumis melo var. makuwa])

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP 60
           MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP
Sbjct: 1   MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP 60

Query: 61  LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ 120
           LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ
Sbjct: 61  LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ 120

[Close]

BLAST of MELO3C025961 vs. NCBI nr
Match: XP_004140001.1 (uncharacterized protein LOC101219556 [Cucumis sativus] >KGN46605.1 hypothetical protein Csa_005653 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 9.5e-32
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 45  MAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 104
           MAAKFPLSSSLT+KFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK
Sbjct: 1   MAAKFPLSSSLTIKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 60

Query: 105 KGGKKKFITKEEEPEQ 121
           KGGKKKFITKEEEPEQ
Sbjct: 61  KGGKKKFITKEEEPEQ 76

[Close]

BLAST of MELO3C025961 vs. NCBI nr
Match: XP_038902667.1 (uncharacterized protein LOC120089303 [Benincasa hispida])

HSP 1 Score: 114.4 bits (285), Expect = 6.9e-22
Identity = 64/76 (84.21%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 45  MAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 104
           MA K PLSSSLT+KFPLQQ+P SSFF PLP PFS PK RP P SRFKLLANLGGGDAEIK
Sbjct: 1   MAVKVPLSSSLTIKFPLQQSP-SSFFSPLPCPFSLPKPRPMP-SRFKLLANLGGGDAEIK 60

Query: 105 KGGKKKFITKEEEPEQ 121
           KG KKKFITKEEEPEQ
Sbjct: 61  KGAKKKFITKEEEPEQ 74

[Close]

BLAST of MELO3C025961 vs. NCBI nr
Match: XP_022140463.1 (uncharacterized protein LOC111011130 [Momordica charantia])

HSP 1 Score: 106.7 bits (265), Expect = 1.4e-19
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 45  MAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRP-TPSSRFKLLANLGGGDAEI 104
           MAAKF LSSSLT+KFPLQQNP SSFF PLPS  SSP  +P + +SRFKL+ANLGGGDAEI
Sbjct: 1   MAAKFALSSSLTIKFPLQQNP-SSFFAPLPSGLSSPNPKPKSRASRFKLVANLGGGDAEI 60

Query: 105 KK-GGKKKFITKEEEPEQ 121
           KK GGKKKFITKEEEPEQ
Sbjct: 61  KKGGGKKKFITKEEEPEQ 77

[Close]

BLAST of MELO3C025961 vs. NCBI nr
Match: XP_023534591.1 (uncharacterized protein LOC111796124 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 105.1 bits (261), Expect = 4.2e-19
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 45  MAAKFPLSSSL-TVKFPLQQNPSSSFFPPLP-SPFSSPKLRPTP-SSRFKLLANLGGGDA 104
           MAAKFPLSSSL T+KFPLQQNP S FF PLP + FS P+ RPTP +S+FKLLAN GGGDA
Sbjct: 1   MAAKFPLSSSLTTIKFPLQQNP-SPFFAPLPCTTFSPPQPRPTPRASQFKLLANSGGGDA 60

Query: 105 EIKKGGKKKFITKEEEPEQ 121
           E+KKGGKKKFITKE+EPEQ
Sbjct: 61  EVKKGGKKKFITKEQEPEQ 78

[Close]

BLAST of MELO3C025961 vs. ExPASy TrEMBL
Match: A0A5D3CJG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001450 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP 60
           MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP
Sbjct: 1   MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP 60

Query: 61  LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ 120
           LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ
Sbjct: 61  LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ 120

[Close]

BLAST of MELO3C025961 vs. ExPASy TrEMBL
Match: A0A1S3CKW7 (uncharacterized protein LOC103502113 OS=Cucumis melo OX=3656 GN=LOC103502113 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP 60
           MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP
Sbjct: 1   MSKYHCHNIHIQISCVDLAKELQEYFISESLVRSSTNTAVTNSTMAAKFPLSSSLTVKFP 60

Query: 61  LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ 120
           LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ
Sbjct: 61  LQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIKKGGKKKFITKEEEPEQ 120

[Close]

BLAST of MELO3C025961 vs. ExPASy TrEMBL
Match: A0A0A0KA68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 4.6e-32
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 45  MAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 104
           MAAKFPLSSSLT+KFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK
Sbjct: 1   MAAKFPLSSSLTIKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 60

Query: 105 KGGKKKFITKEEEPEQ 121
           KGGKKKFITKEEEPEQ
Sbjct: 61  KGGKKKFITKEEEPEQ 76

[Close]

BLAST of MELO3C025961 vs. ExPASy TrEMBL
Match: A0A6J1CI22 (uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011130 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.9e-20
Identity = 63/78 (80.77%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 45  MAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRP-TPSSRFKLLANLGGGDAEI 104
           MAAKF LSSSLT+KFPLQQNP SSFF PLPS  SSP  +P + +SRFKL+ANLGGGDAEI
Sbjct: 1   MAAKFALSSSLTIKFPLQQNP-SSFFAPLPSGLSSPNPKPKSRASRFKLVANLGGGDAEI 60

Query: 105 KK-GGKKKFITKEEEPEQ 121
           KK GGKKKFITKEEEPEQ
Sbjct: 61  KKGGGKKKFITKEEEPEQ 77

[Close]

BLAST of MELO3C025961 vs. ExPASy TrEMBL
Match: A0A6J1I5Y3 (uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.0e-19
Identity = 62/78 (79.49%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 45  MAAKFPLSSSL-TVKFPLQQNPSSSFFPPLP-SPFSSPKLRPTPSSRFKLLANLGGGDAE 104
           MAAKFPLSSSL T+KFPLQQNP S FFPPLP + FS PK +P  +S+FKLLAN GGGDAE
Sbjct: 1   MAAKFPLSSSLTTIKFPLQQNP-SPFFPPLPCTTFSPPKPKPR-ASQFKLLANSGGGDAE 60

Query: 105 IKKGGKKKFITKEEEPEQ 121
           +KKGGKKKFITKEEEPEQ
Sbjct: 61  VKKGGKKKFITKEEEPEQ 76

[Close]

BLAST of MELO3C025961 vs. TAIR 10
Match: AT4G13500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-07
Identity = 42/87 (48.28%), Postives = 46/87 (52.87%), Query Frame = 0


Query: 45  MAAKFPLSSSLTVKFPLQQNPSSS-----------FFPPLPSPFSSPKLRPTPSSRFKLL 104
           MAAKF +SSS         + SSS           FF P PSP   P+        FKL 
Sbjct: 1   MAAKFRISSSSFSHRASDSSTSSSSSYSSLLALPQFFCP-PSPLGFPE--------FKLH 60

Query: 105 ANLGGGDAEIKKGGKKKFITKEEEPEQ 121
           A LGGGD E+K   KKKFITKEEEPEQ
Sbjct: 61  AKLGGGDGEVKPKDKKKFITKEEEPEQ 78

[Close]

BLAST of MELO3C025961 vs. TAIR 10
Match: AT2G05310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13500.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.8e-05
Identity = 37/80 (46.25%), Postives = 42/80 (52.50%), Query Frame = 0


Query: 45  MAAKFPLSSS----LTVKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGD 104
           MAAK  + SS     T       + S S    LP  F  P   P    +FKL A LGGGD
Sbjct: 1   MAAKLCIPSSSFSHRTNDSITSSSSSYSSLLALPQFFCPPS--PLGFPQFKLHAKLGGGD 60

Query: 105 AEIKKGGKKKFITKEEEPEQ 121
            E+K   KKKFITK+EEPEQ
Sbjct: 61  GEVKPKDKKKFITKDEEPEQ 78

The following BLAST results are available for this feature:

BLAST of MELO3C025961 vs.


Match Name	E-value	Identity	Description

BLAST of MELO3C025961 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464165.1	2.3e-57	100.00	PREDICTED: uncharacterized protein LOC103502113 [Cucumis melo] >KAA0060798.1 unc...	[more]
XP_004140001.1	9.5e-32	98.68	uncharacterized protein LOC101219556 [Cucumis sativus] >KGN46605.1 hypothetical ...	[more]
XP_038902667.1	6.9e-22	84.21	uncharacterized protein LOC120089303 [Benincasa hispida]	[more]
XP_022140463.1	1.4e-19	80.77	uncharacterized protein LOC111011130 [Momordica charantia]	[more]
XP_023534591.1	4.2e-19	78.48	uncharacterized protein LOC111796124 [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C025961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJG8	1.1e-57	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKW7	1.1e-57	100.00	uncharacterized protein LOC103502113 OS=Cucumis melo OX=3656 GN=LOC103502113 PE=...	[more]
A0A0A0KA68	4.6e-32	98.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1	[more]
A0A6J1CI22	6.9e-20	80.77	uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1I5Y3	2.0e-19	79.49	uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898...	[more]

BLAST of MELO3C025961 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13500.1	3.9e-07	48.28	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G05310.1	4.8e-05	46.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C025961.1	MELO3C025961.1	mRNA