MELO3C022771 (gene) Melon (DHL92) v4

Overview


Name	MELO3C022771
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RING-type E3 ubiquitin transferase
Location	chr09: 11261220 .. 11261389 (-)
RNA-Seq Expression	MELO3C022771
Synteny	MELO3C022771

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCGTCATTCCACCGTCGTGAGCCTTAAGCATTCGAACATGAGTCGAGCTGCCCCTATGCGTGTAAGCCGAGCTACATCTTTCAGAGTCGATCATTCGGGCGAGCCGTCCTCTAACATCAGCAACCCGAGTTGCCCTTCATCCCTTGCAAGCCACAAAGCCCAGCT

mRNA sequence

ATGTCCCGTCATTCCACCGTCGTGAGCCTTAAGCATTCGAACATGAGTCGAGCTGCCCCTATGCGTGTAAGCCGAGCTACATCTTTCAGAGTCGATCATTCGGGCGAGCCGTCCTCTAACATCAGCAACCCGAGTTGCCCTTCATCCCTTGCAAGCCACAAAGCCCAGCT

Coding sequence (CDS)

ATGTCCCGTCATTCCACCGTCGTGAGCCTTAAGCATTCGAACATGAGTCGAGCTGCCCCTATGCGTGTAAGCCGAGCTACATCTTTCAGAGTCGATCATTCGGGCGAGCCGTCCTCTAACATCAGCAACCCGAGTTGCCCTTCATCCCTTGCAAGCCACAAAGCCCAG

Protein sequence

MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ

Homology

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BLAST of MELO3C022771 vs. NCBI nr
Match: KAA0057715.1 (RING-H2 finger protein ATL54-like [Cucumis melo var. makuwa] >TYK26499.1 RING-H2 finger protein ATL54-like [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 3.9e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ 57
           MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ
Sbjct: 64  MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ 119

[Close]

BLAST of MELO3C022771 vs. ExPASy TrEMBL
Match: A0A5D3DSQ9 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00710 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ 57
           MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ
Sbjct: 64  MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ 119

The following BLAST results are available for this feature:

BLAST of MELO3C022771 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057715.1	3.9e-20	100.00	RING-H2 finger protein ATL54-like [Cucumis melo var. makuwa] >TYK26499.1 RING-H2...	[more]

BLAST of MELO3C022771 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C022771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSQ9	1.9e-20	100.00	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of MELO3C022771 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C022771.1	MELO3C022771.1	mRNA