Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide three_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCGTCATTCCACCGTCGTGAGCCTTAAGCATTCGAACATGAGTCGAGCTGCCCCTATGCGTGTAAGCCGAGCTACATCTTTCAGAGTCGATCATTCGGGCGAGCCGTCCTCTAACATCAGCAACCCGAGTTGCCCTTCATCCCTTGCAAGCCACAAAGCCCAG CT mRNA sequence
ATGTCCCGTCATTCCACCGTCGTGAGCCTTAAGCATTCGAACATGAGTCGAGCTGCCCCTATGCGTGTAAGCCGAGCTACATCTTTCAGAGTCGATCATTCGGGCGAGCCGTCCTCTAACATCAGCAACCCGAGTTGCCCTTCATCCCTTGCAAGCCACAAAGCCCAGCT Coding sequence (CDS)
ATGTCCCGTCATTCCACCGTCGTGAGCCTTAAGCATTCGAACATGAGTCGAGCTGCCCCTATGCGTGTAAGCCGAGCTACATCTTTCAGAGTCGATCATTCGGGCGAGCCGTCCTCTAACATCAGCAACCCGAGTTGCCCTTCATCCCTTGCAAGCCACAAAGCCCAG Protein sequence
MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ
Homology
BLAST of MELO3C022771.1 vs. NCBI nr
Match:
KAA0057715.1 (RING-H2 finger protein ATL54-like [Cucumis melo var. makuwa] >TYK26499.1 RING-H2 finger protein ATL54-like [Cucumis melo var. makuwa])
HSP 1 Score: 107.5 bits (267), Expect = 3.9e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0
Query: 1 MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ 57 MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ Sbjct: 64 MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ 119
BLAST of MELO3C022771.1 vs. ExPASy TrEMBL
Match:
A0A5D3DSQ9 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G00710 PE=4 SV=1)
HSP 1 Score: 107.5 bits (267), Expect = 1.9e-20
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0
Query: 1 MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ 57 MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ Sbjct: 64 MSRHSTVVSLKHSNMSRAAPMRVSRATSFRVDHSGEPSSNISNPSCPSSLASHKAQ 119
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0057715.1 3.9e-20 100.00 RING-H2 finger protein ATL54-like [Cucumis melo var. makuwa] >TYK26499.1 RING-H2... [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A5D3DSQ9 1.9e-20 100.00 RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
A T G T C C C G T C A T T C C A C C G T C G T G A G C C T T A A G C A T T C G A A C A T G A G T C G A G C T G C C C C T A T G C G T G T A A G C C G A G C T A C A T C T T T C A G A G T C G A T C A T T C G G G C G A G C C G T C C T C T A A C A T C A G C A A C C C G A G T T G C C C T T C A T C C C T T G C A A G C C A C A A A G C C C A G C T 20 40 60 80 100 120 140 160 Score = Score = Sequence mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..56
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 31..56
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Type
MELO3C022771.1:exon:267602 MELO3C022771.1:exon:267602 exon
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Type
MELO3C022771.1:three_prime_utr MELO3C022771.1:three_prime_utr three_prime_UTR
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
MELO3C022771.1:cds MELO3C022771.1:cds CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
MELO3C022771.1 MELO3C022771.1-protein polypeptide