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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAAGAGGATGATCCTATCGAGAAAGATGATGAGTCTATCGACTTTTGCATTGAAGATGACGATGATGATTCTATCGACTGTAACCGCATTGAAGATGAAGATGATGATCCTATTAGTTTCGACCGCTTCAAAGATAAAGATGATGATCCATGA mRNA sequence ATGGAAGAGGATGATCCTATCGAGAAAGATGATGAGTCTATCGACTTTTGCATTGAAGATGACGATGATGATTCTATCGACTGTAACCGCATTGAAGATGAAGATGATGATCCTATTAGTTTCGACCGCTTCAAAGATAAAGATGATGATCCATGA Coding sequence (CDS) ATGGAAGAGGATGATCCTATCGAGAAAGATGATGAGTCTATCGACTTTTGCATTGAAGATGACGATGATGATTCTATCGACTGTAACCGCATTGAAGATGAAGATGATGATCCTATTAGTTTCGACCGCTTCAAAGATAAAGATGATGATCCATGA Protein sequence MEEDDPIEKDDESIDFCIEDDDDDSIDCNRIEDEDDDPISFDRFKDKDDDP
Homology
BLAST of MELO3C021861 vs. NCBI nr
Match: XP_008456992.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo] >TYK25823.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa]) HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04 Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0
Query: 2 EEDDPIE-----KDDESIDFCIEDDDDDSIDCNRIEDEDDDPISFDRFKDKDDD 51
E+DD I+ +DD+ IDF IED+DDDSIDC+ IED+DDDPI +DRF+D+DDD
Sbjct: 32 EDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHIEDKDDDPIGWDRFEDEDDD 85
BLAST of MELO3C021861 vs. ExPASy TrEMBL
Match: A0A5D3DQ88 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00280 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04 Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0
Query: 2 EEDDPIE-----KDDESIDFCIEDDDDDSIDCNRIEDEDDDPISFDRFKDKDDD 51
E+DD I+ +DD+ IDF IED+DDDSIDC+ IED+DDDPI +DRF+D+DDD
Sbjct: 32 EDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHIEDKDDDPIGWDRFEDEDDD 85
BLAST of MELO3C021861 vs. ExPASy TrEMBL
Match: A0A1S3C4K1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496781 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.7e-04 Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 0
Query: 2 EEDDPIE-----KDDESIDFCIEDDDDDSIDCNRIEDEDDDPISFDRFKDKDDD 51
E+DD I+ +DD+ IDF IED+DDDSIDC+ IED+DDDPI +DRF+D+DDD
Sbjct: 32 EDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHIEDKDDDPIGWDRFEDEDDD 85
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_008456992.1 | 3.6e-04 | 62.96 | PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DQ88 | 1.7e-04 | 62.96 | Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... | [more] |
| A0A1S3C4K1 | 1.7e-04 | 62.96 | phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 36..51 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..51 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..35 |
Relationships
The following mRNA feature(s) are a part of this gene:
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