MELO3C021826 (gene) Melon (DHL92) v4

Overview


Name	MELO3C021826
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ty3-gypsy retrotransposon protein
Location	chr11: 6812821 .. 6812970 (-)
RNA-Seq Expression	MELO3C021826
Synteny	MELO3C021826

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAGAAGGTGGAAGAAAGGTTCGAGGCAGTAGAACAAGATATTTCTAGCATCCGAGCAGAACTTCCAAAGTTACCTGCAATAGAAGAGAACCTATCCTCAGTGGCAAAGAACATTGAGCGACTGAGCATCCAAAACGAAAAATAG

mRNA sequence

ATGGCGAAGAAGGTGGAAGAAAGGTTCGAGGCAGTAGAACAAGATATTTCTAGCATCCGAGCAGAACTTCCAAAGTTACCTGCAATAGAAGAGAACCTATCCTCAGTGGCAAAGAACATTGAGCGACTGAGCATCCAAAACGAAAAATAG

Coding sequence (CDS)

ATGGCGAAGAAGGTGGAAGAAAGGTTCGAGGCAGTAGAACAAGATATTTCTAGCATCCGAGCAGAACTTCCAAAGTTACCTGCAATAGAAGAGAACCTATCCTCAGTGGCAAAGAACATTGAGCGACTGAGCATCCAAAACGAAAAATAG

Protein sequence

MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK

Homology

[Close]

BLAST of MELO3C021826 vs. NCBI nr
Match: KAA0039162.1 (hypothetical protein E6C27_scaffold121G00640 [Cucumis melo var. makuwa] >TYK26950.1 hypothetical protein E5676_scaffold322G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 8.7e-08
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVA--KNIERLSIQNEK 50
          M KK EERFEA++Q+IS IRAEL KLPA+EE LSS+A  KNIE+LSIQ+EK
Sbjct: 9  MTKKKEERFEAIDQEISGIRAELQKLPAVEEKLSSLAMVKNIEQLSIQSEK 59

[Close]

BLAST of MELO3C021826 vs. NCBI nr
Match: KAA0043341.1 (putative ribose-5-phosphate isomerase 4 [Cucumis melo var. makuwa] >TYK02671.1 putative ribose-5-phosphate isomerase 4 [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 1   MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
           MAKK EERFE++EQ++S ++ +L KLP +EE LS++ KNIERL++QNEK
Sbjct: 142 MAKKYEERFESLEQEVSEMKVDLQKLPVMEEKLSTIMKNIERLNVQNEK 190

[Close]

BLAST of MELO3C021826 vs. NCBI nr
Match: KAA0036991.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          MAKK EERFEA+EQ++S ++ +L KLPA+EE LS++ K IERL++QNEK
Sbjct: 1  MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERLNVQNEK 49

[Close]

BLAST of MELO3C021826 vs. NCBI nr
Match: TYK17139.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 5.7e-07
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          MAKK EERFEA+EQ++S ++ +L KLPA+EE LS++ K IERL++QNEK
Sbjct: 1  MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKMIERLNVQNEK 49

[Close]

BLAST of MELO3C021826 vs. NCBI nr
Match: KAA0054161.1 (uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-06
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 3  KKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          K++EE+ EA +QDIS IR EL KLP IEENLSS AK+IERL IQ EK
Sbjct: 4  KRIEEKLEAFDQDISEIRVELHKLPTIEENLSSTAKSIERLGIQAEK 50

[Close]

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5A7T6Q0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00090 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-08
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVA--KNIERLSIQNEK 50
          M KK EERFEA++Q+IS IRAEL KLPA+EE LSS+A  KNIE+LSIQ+EK
Sbjct: 9  MTKKKEERFEAIDQEISGIRAELQKLPAVEEKLSSLAMVKNIEQLSIQSEK 59

[Close]

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5A7T5W7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold359G00210 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          MAKK EERFEA+EQ++S ++ +L KLPA+EE LS++ K IERL++QNEK
Sbjct: 1  MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKTIERLNVQNEK 49

[Close]

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5D3BSE7 (Putative ribose-5-phosphate isomerase 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1734G00180 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-07
Identity = 30/49 (61.22%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 1   MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
           MAKK EERFE++EQ++S ++ +L KLP +EE LS++ KNIERL++QNEK
Sbjct: 142 MAKKYEERFESLEQEVSEMKVDLQKLPVMEEKLSTIMKNIERLNVQNEK 190

[Close]

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5D3D379 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00780 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.7e-07
Identity = 31/49 (63.27%), Postives = 42/49 (85.71%), Query Frame = 0


Query: 1  MAKKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          MAKK EERFEA+EQ++S ++ +L KLPA+EE LS++ K IERL++QNEK
Sbjct: 1  MAKKHEERFEALEQEVSEMKKDLQKLPAVEEKLSTIMKMIERLNVQNEK 49

[Close]

BLAST of MELO3C021826 vs. ExPASy TrEMBL
Match: A0A5A7UKU8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00900 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.1e-07
Identity = 33/47 (70.21%), Postives = 38/47 (80.85%), Query Frame = 0


Query: 3  KKVEERFEAVEQDISSIRAELPKLPAIEENLSSVAKNIERLSIQNEK 50
          K++EE+ EA +QDIS IR EL KLP IEENLSS AK+IERL IQ EK
Sbjct: 4  KRIEEKLEAFDQDISEIRVELHKLPTIEENLSSTAKSIERLGIQAEK 50

The following BLAST results are available for this feature:

BLAST of MELO3C021826 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039162.1	8.7e-08	72.55	hypothetical protein E6C27_scaffold121G00640 [Cucumis melo var. makuwa] >TYK2695...	[more]
KAA0043341.1	3.3e-07	61.22	putative ribose-5-phosphate isomerase 4 [Cucumis melo var. makuwa] >TYK02671.1 p...	[more]
KAA0036991.1	3.3e-07	63.27	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21214.1 ty3-gyp...	[more]
TYK17139.1	5.7e-07	63.27	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0054161.1	1.3e-06	70.21	uncharacterized protein E6C27_scaffold131G00900 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C021826 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C021826 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6Q0	4.2e-08	72.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T5W7	1.6e-07	63.27	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BSE7	1.6e-07	61.22	Putative ribose-5-phosphate isomerase 4 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3D379	2.7e-07	63.27	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7UKU8	6.1e-07	70.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of MELO3C021826 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C021826.1	MELO3C021826.1	mRNA