MELO3C020396.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C020396.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr05: 10320309 .. 10320935 (+)
RNA-Seq ExpressionMELO3C020396.jh1
SyntenyMELO3C020396.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCGTTCTTTACCAGATCTGGTGATGGTGCCGGGGCTGTACTGTCTTGTGAATCCACAACTGTAGGTGGTGCGGGTGGGCTCGGGACGGTTGGGGCCGGGGCTGGTGCTTGATGCTTCTTATGTTTGTGACGTCTCCTATGCTTATGTTTTCCCGGCGCGGGTGCAGGGGATAACTCAGGGGACGCAACAGGTGCTGGGGTTGGTGGCGAAGGTGTTGGTGTTGGCGAAGTCGGTAATGGTAATGGTGCTAAGGTGGGAGCTAGCACCGGTGGTGTTGGCAAAGGAGTCGGAGAGACTTGCGGTGGTGGTAAAGGAGGCGGCAATGGCGGAGGCGTAGCGGGGGGAGGTGGAAATGCTGGGGGTAGCGACGGGGTCGAGACAGGTGAACTTTGGGGTGGTGGAATGGCTGGACTTGTTGATGGTGCAACAACAGTAGGTGGTGGTGTTGACAATGGGGGAGGAGTTGGTACAGTTGGAGGTGGGGTAGAGGGGGGAGGAGAGACGGTTGGCAAACTGGGTGGCTGTGCCGGGGCCTGGGCGATCGCGGAAGAGAATAGAAAGGCAAGGCAGATGACAGAAAAGGACCATAATTTGGAAGCCATGGTTGGAGATGGGAAATAA

mRNA sequence

ATGAAGGCGTTCTTTACCAGATCTGGTGATGGTGCCGGGGCTGTACTGTCTTGTGAATCCACAACTGTAGGTGGGGATAACTCAGGGGACGCAACAGGTGCTGGGGTTGGTGGCGAAGGTGTTGGTGTTGGCGAAGTCGGTAATGGTAATGGTGCTAAGGTGGGAGCTAGCACCGGTGGTGTTGGCAAAGGAGTCGGAGAGACTTGCGGTGGTGGTAAAGGAGGCGGCAATGGCGGAGGCGTAGCGGGGGGAGGTGGAAATGCTGGGGGTAGCGACGGGGTCGAGACAGGTGAACTTTGGGGTGGTGGAATGGCTGGACTTGTTGATGGTGCAACAACAGTAGGTGGTGGTGTTGACAATGGGGGAGGAGTTGGTACAGTTGGAGGTGGGGTAGAGGGGGGAGGAGAGACGGTTGGCAAACTGGGTGGCTGTGCCGGGGCCTGGGCGATCGCGGAAGAGAATAGAAAGGCAAGGCAGATGACAGAAAAGGACCATAATTTGGAAGCCATGGTTGGAGATGGGAAATAA

Coding sequence (CDS)

ATGAAGGCGTTCTTTACCAGATCTGGTGATGGTGCCGGGGCTGTACTGTCTTGTGAATCCACAACTGTAGGTGGGGATAACTCAGGGGACGCAACAGGTGCTGGGGTTGGTGGCGAAGGTGTTGGTGTTGGCGAAGTCGGTAATGGTAATGGTGCTAAGGTGGGAGCTAGCACCGGTGGTGTTGGCAAAGGAGTCGGAGAGACTTGCGGTGGTGGTAAAGGAGGCGGCAATGGCGGAGGCGTAGCGGGGGGAGGTGGAAATGCTGGGGGTAGCGACGGGGTCGAGACAGGTGAACTTTGGGGTGGTGGAATGGCTGGACTTGTTGATGGTGCAACAACAGTAGGTGGTGGTGTTGACAATGGGGGAGGAGTTGGTACAGTTGGAGGTGGGGTAGAGGGGGGAGGAGAGACGGTTGGCAAACTGGGTGGCTGTGCCGGGGCCTGGGCGATCGCGGAAGAGAATAGAAAGGCAAGGCAGATGACAGAAAAGGACCATAATTTGGAAGCCATGGTTGGAGATGGGAAATAA

Protein sequence

MKAFFTRSGDGAGAVLSCESTTVGGDNSGDATGAGVGGEGVGVGEVGNGNGAKVGASTGGVGKGVGETCGGGKGGGNGGGVAGGGGNAGGSDGVETGELWGGGMAGLVDGATTVGGGVDNGGGVGTVGGGVEGGGETVGKLGGCAGAWAIAEENRKARQMTEKDHNLEAMVGDGK
Homology
BLAST of MELO3C020396.jh1 vs. NCBI nr
Match: KAF9674159.1 (hypothetical protein SADUNF_Sadunf10G0098600 [Salix dunnii])

HSP 1 Score: 53.5 bits (127), Expect = 1.24e-04
Identity = 76/167 (45.51%), Postives = 85/167 (50.90%), Query Frame = 0

Query: 25   GDNSGDATGAGVGGEGVGVGEVGNGNGAKVGASTGGVGKGV-----GETCGGGKGGGNGG 84
            G N G+  G G+ G G G G  G   GA  G S  G G GV     G+TCGGGK    GG
Sbjct: 901  GTNDGEGAGGGIAGAGTGAG--GGVAGAGAGTSFAGAGAGVACAGAGDTCGGGK---EGG 960

Query: 85   GVAGGGGNAGGSDGVETGELWGGGMAGLVDGATTVGG---GVDNGGGVGT---------- 144
            GVAGGGG+AGG  G   GEL GGG  GL+ GAT   G   GV  GGGV            
Sbjct: 961  GVAGGGGSAGGCIGAAVGELCGGGTTGLIAGATLGDGDDIGVVAGGGVTALAGDCVGVVG 1020

Query: 145  --VGGGVEGGGETVGKLGG-CAGAWAIAEENRKARQMTEKDHNLEAM 170
              VGGGV   G  VGK+ G  AG WA    N K RQ   +  + EA+
Sbjct: 1021 VIVGGGVVAVG-VVGKVDGEAAGVWASVIANGKLRQTKMRAQSTEAI 1061

BLAST of MELO3C020396.jh1 vs. NCBI nr
Match: KAG6757826.1 (hypothetical protein POTOM_038152 [Populus tomentosa])

HSP 1 Score: 52.4 bits (124), Expect = 2.34e-04
Identity = 72/176 (40.91%), Postives = 85/176 (48.30%), Query Frame = 0

Query: 6   TRSGDGAGAVLSCESTTVGGDNSGDATGAGVGGEGVGVGEVGNGNGAKVGASTGGVGKGV 65
           T  G+GAG  ++   T+ GG  +G   G  + G+G G G  G G G            GV
Sbjct: 179 TNDGEGAGGGIAGAGTSAGGGVAGAGAGTSLAGDGAGGGVAGAGGGV----------AGV 238

Query: 66  GETCGGGKGGGNGGGVAGGGGNAGGSDGVETGELWGGGMAGLVDGATTVGGG---VDNGG 125
           G+TCGGGK    GGGVAGGG       GV  GEL GGG  G+V GAT   GG   V  GG
Sbjct: 239 GDTCGGGK---EGGGVAGGG------IGVAAGELCGGGTTGVVAGATLGDGGDIGVVAGG 298

Query: 126 GV--------GTVGGGVEGGGETVGKLGGCAGAWAIAEENRKARQMTEKDHNLEAM 170
           GV        G VG  V GG   VG  G  AG WA    + K RQ   +  + EA+
Sbjct: 299 GVTALAGDCVGVVGVVVGGGVVVVGVDGDAAGVWASVIASGKLRQAKMRAQSTEAI 335

BLAST of MELO3C020396.jh1 vs. NCBI nr
Match: KAB5538269.1 (hypothetical protein DKX38_015802 [Salix brachista])

HSP 1 Score: 50.4 bits (119), Expect = 4.09e-04
Identity = 75/173 (43.35%), Postives = 84/173 (48.55%), Query Frame = 0

Query: 13  GAVLSCESTTVG---GDNSGDATGAGVGGEGVGVGEVGNGNGAKVGASTGGV---GKGVG 72
           GAV S    TVG   G+ + D  GAG G  G G G  G G GA +     GV   G G G
Sbjct: 5   GAVSSDAVVTVGAGAGEGTNDGEGAGGGIAGAGGGVAGAGAGASLAGDGAGVSFAGAGAG 64

Query: 73  ETCGGGKGGGNGGGVAGGGGNAGGSDGVETGELWGGGMAGLVDGATTVGG---GVDNGGG 132
           +TCGGGK         GGGG+AGG  G   GEL GGG  GLV GAT   G   GV  GGG
Sbjct: 65  DTCGGGK--------EGGGGSAGGCIGAAVGELCGGGTTGLVAGATLGDGDDIGVVAGGG 124

Query: 133 VGTVGG------GVEGGGETVGKLGGCAGAWAIAEENRKARQMTEKDHNLEAM 170
           V  + G      GV  GG  V   G  AG WA    N K RQ   +  + EA+
Sbjct: 125 VTALAGDCVGVVGVVVGGGVVVVDGEAAGVWASVIANGKLRQAKMRAQSTEAI 169

BLAST of MELO3C020396.jh1 vs. ExPASy TrEMBL
Match: A0A4U5QVH9 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000037350 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.42e-05
Identity = 72/176 (40.91%), Postives = 84/176 (47.73%), Query Frame = 0

Query: 6   TRSGDGAGAVLSCESTTVGGDNSGDATGAGVGGEGVGVGEVGNGNGAKVGASTGGVGKGV 65
           T  G+GAG  ++   T  GG  +G   G  + G+G G G  G G G            G 
Sbjct: 56  TNDGEGAGGGIAGAGTGAGGGVAGAGAGTSLAGDGAGGGVAGAGGGV----------AGA 115

Query: 66  GETCGGGKGGGNGGGVAGGGGNAGGSDGVETGELWGGGMAGLVDGATTVGG---GVDNGG 125
           G+TCGGGK    GGGVAGGG       GV  GEL GGG  G+V GAT   G   GV  GG
Sbjct: 116 GDTCGGGK---EGGGVAGGG------IGVAAGELCGGGTTGVVAGATLGDGDDIGVVAGG 175

Query: 126 GV--------GTVGGGVEGGGETVGKLGGCAGAWAIAEENRKARQMTEKDHNLEAM 170
           GV        G VG  V GGG  VG  G  AG WA    + K RQ   +  + EA+
Sbjct: 176 GVTALAGDCVGVVGVVVGGGGVVVGVDGDAAGVWASVIASGKLRQAKMRAQSTEAI 212

BLAST of MELO3C020396.jh1 vs. ExPASy TrEMBL
Match: A0A5N5L690 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_015802 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.98e-04
Identity = 75/173 (43.35%), Postives = 84/173 (48.55%), Query Frame = 0

Query: 13  GAVLSCESTTVG---GDNSGDATGAGVGGEGVGVGEVGNGNGAKVGASTGGV---GKGVG 72
           GAV S    TVG   G+ + D  GAG G  G G G  G G GA +     GV   G G G
Sbjct: 5   GAVSSDAVVTVGAGAGEGTNDGEGAGGGIAGAGGGVAGAGAGASLAGDGAGVSFAGAGAG 64

Query: 73  ETCGGGKGGGNGGGVAGGGGNAGGSDGVETGELWGGGMAGLVDGATTVGG---GVDNGGG 132
           +TCGGGK         GGGG+AGG  G   GEL GGG  GLV GAT   G   GV  GGG
Sbjct: 65  DTCGGGK--------EGGGGSAGGCIGAAVGELCGGGTTGLVAGATLGDGDDIGVVAGGG 124

Query: 133 VGTVGG------GVEGGGETVGKLGGCAGAWAIAEENRKARQMTEKDHNLEAM 170
           V  + G      GV  GG  V   G  AG WA    N K RQ   +  + EA+
Sbjct: 125 VTALAGDCVGVVGVVVGGGVVVVDGEAAGVWASVIANGKLRQAKMRAQSTEAI 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAF9674159.11.24e-0445.51hypothetical protein SADUNF_Sadunf10G0098600 [Salix dunnii][more]
KAG6757826.12.34e-0440.91hypothetical protein POTOM_038152 [Populus tomentosa][more]
KAB5538269.14.09e-0443.35hypothetical protein DKX38_015802 [Salix brachista][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A4U5QVH93.42e-0540.91Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000037350 PE=4 SV=1[more]
A0A5N5L6901.98e-0443.35Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_015802 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 75..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..175

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020396.jh1.t1MELO3C020396.jh1.t1mRNA