MELO3C020364 (gene) Melon (DHL92) v4

Overview
NameMELO3C020364
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPhosphopantothenoylcysteine decarboxylase subunit VHS3-like
Locationchr05: 10519575 .. 10519883 (-)
RNA-Seq ExpressionMELO3C020364
SyntenyMELO3C020364
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCGAGACTATACCAACATATCAACTGAACACATGGAAGAGGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTCCAACCACATTGAAGATGAAGATGGTGATCCTATCGACTGCAACTGCATTGAAGATGAAGATGATGATCCTATCGACTGCGACCACATTGAAGATGAAGATGATGATCGTCTTGGTTACGCCGCATTGAAGATAGAGATGATGATCATTTTGGTTGCGTTGCATTGA

mRNA sequence

ATGGAGAAGCGAGACTATACCAACATATCAACTGAACACATGGAAGAGGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTCCAACCACATTGAAGATGAAGATGGTGATCCTATCGACTGCAACTGCATTGAAGATGAAGATGATGATCCTATCGACTGCGACCACATTGAAGATGAAGATGATGATCGTCTTGGTTACGCCGCATTGAAGATAGAGATGATGATCATTTTGGTTGCGTTGCATTGA

Coding sequence (CDS)

ATGGAGAAGCGAGACTATACCAACATATCAACTGAACACATGGAAGAGGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTTTAACCACATTAAACATGAAGATGATGATTCTATCGACTCCAACCACATTGAAGATGAAGATGGTGATCCTATCGACTGCAACTGCATTGAAGATGAAGATGATGATCCTATCGACTGCGACCACATTGAAGATGAAGATGATGATCGTCTTGGTTACGCCGCATTGAAGATAGAGATGATGATCATTTTGGTTGCGTTGCATTGA

Protein sequence

MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH
Homology
BLAST of MELO3C020364 vs. NCBI nr
Match: KAA0039603.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYK01703.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 198.0 bits (502), Expect = 4.0e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60
           MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID
Sbjct: 1   MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60

Query: 61  CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 103
           CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH
Sbjct: 61  CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 102

BLAST of MELO3C020364 vs. NCBI nr
Match: XP_016902073.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo])

HSP 1 Score: 190.3 bits (482), Expect = 8.4e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60
          MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID
Sbjct: 1  MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60

Query: 61 CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL 99
          CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL
Sbjct: 61 CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL 98

BLAST of MELO3C020364 vs. NCBI nr
Match: XP_008456992.1 (PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo] >TYK25823.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 16  EDDSIDFNHIKHEDDDSIDFNHIKHEDDDSID-----------SNHIEDEDGDPIDCNCI 75
           +DD IDFN IK EDDDSIDF +I+ EDDDSID             +IEDED D IDC+ I
Sbjct: 8   DDDPIDFNRIKDEDDDSIDF-YIEDEDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHI 67

Query: 76  EDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILV 100
           ED+DDDPI  D  EDEDDDRLG  ALK++MMI+ V
Sbjct: 68  EDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSV 101

BLAST of MELO3C020364 vs. NCBI nr
Match: KAA0037362.1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa] >TYJ97544.1 phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 8.7e-10
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 12  EHMEEDDS-----IDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDED----------- 71
           +H++EDD+     IDFN +K E DDSID + I+ EDDD I  +  ED+D           
Sbjct: 28  QHLKEDDAIDDDPIDFNLVKDEADDSIDCDCIEDEDDDPISCHRFEDDDRLGCVTLKMEM 87

Query: 72  ----GDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMII 98
                DPI  NC++DEDDDPI CD  EDE+D+ LG A LKI+MMI+
Sbjct: 88  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCLGCATLKIKMMIV 133

BLAST of MELO3C020364 vs. NCBI nr
Match: KAA0050091.1 (prostatic spermine-binding protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.5e-09
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 0

Query: 41  EDDDSIDSNHIEDEDGDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVA 100
           E +D I+ N I+DED D +DC+ IEDEDDDPIDCD  EDEDDD LG A LK+EMMI+  A
Sbjct: 2   EKNDPINFNLIKDEDDDSVDCDRIEDEDDDPIDCDRFEDEDDDCLGRATLKMEMMIVSTA 61

Query: 101 LH 103
           LH
Sbjct: 62  LH 63

BLAST of MELO3C020364 vs. ExPASy TrEMBL
Match: A0A5D3BPS5 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00260 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.9e-47
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60
           MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID
Sbjct: 1   MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60

Query: 61  CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 103
           CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH
Sbjct: 61  CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILVALH 102

BLAST of MELO3C020364 vs. ExPASy TrEMBL
Match: A0A1S4E1H3 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC107991530 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.0e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60
          MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID
Sbjct: 1  MEKRDYTNISTEHMEEDDSIDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDEDGDPID 60

Query: 61 CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL 99
          CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL
Sbjct: 61 CNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIIL 98

BLAST of MELO3C020364 vs. ExPASy TrEMBL
Match: A0A5D3DQ88 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00280 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.8e-14
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 16  EDDSIDFNHIKHEDDDSIDFNHIKHEDDDSID-----------SNHIEDEDGDPIDCNCI 75
           +DD IDFN IK EDDDSIDF +I+ EDDDSID             +IEDED D IDC+ I
Sbjct: 8   DDDPIDFNRIKDEDDDSIDF-YIEDEDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHI 67

Query: 76  EDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILV 100
           ED+DDDPI  D  EDEDDDRLG  ALK++MMI+ V
Sbjct: 68  EDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSV 101

BLAST of MELO3C020364 vs. ExPASy TrEMBL
Match: A0A1S3C4K1 (phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3656 GN=LOC103496781 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.8e-14
Identity = 58/95 (61.05%), Postives = 67/95 (70.53%), Query Frame = 0

Query: 16  EDDSIDFNHIKHEDDDSIDFNHIKHEDDDSID-----------SNHIEDEDGDPIDCNCI 75
           +DD IDFN IK EDDDSIDF +I+ EDDDSID             +IEDED D IDC+ I
Sbjct: 8   DDDPIDFNRIKDEDDDSIDF-YIEDEDDDSIDFYIENEDDDFIDFYIEDEDDDSIDCDHI 67

Query: 76  EDEDDDPIDCDHIEDEDDDRLGYAALKIEMMIILV 100
           ED+DDDPI  D  EDEDDDRLG  ALK++MMI+ V
Sbjct: 68  EDKDDDPIGWDRFEDEDDDRLGCVALKMKMMIVSV 101

BLAST of MELO3C020364 vs. ExPASy TrEMBL
Match: A0A5A7T1P1 (Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00660 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 51/106 (48.11%), Postives = 66/106 (62.26%), Query Frame = 0

Query: 12  EHMEEDDS-----IDFNHIKHEDDDSIDFNHIKHEDDDSIDSNHIEDED----------- 71
           +H++EDD+     IDFN +K E DDSID + I+ EDDD I  +  ED+D           
Sbjct: 28  QHLKEDDAIDDDPIDFNLVKDEADDSIDCDCIEDEDDDPISCHRFEDDDRLGCVTLKMEM 87

Query: 72  ----GDPIDCNCIEDEDDDPIDCDHIEDEDDDRLGYAALKIEMMII 98
                DPI  NC++DEDDDPI CD  EDE+D+ LG A LKI+MMI+
Sbjct: 88  LLEEDDPIHFNCVKDEDDDPIGCDRFEDENDNCLGCATLKIKMMIV 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0039603.14.0e-47100.00phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
XP_016902073.18.4e-45100.00PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
XP_008456992.11.0e-1361.05PREDICTED: phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis ... [more]
KAA0037362.18.7e-1048.11phosphopantothenoylcysteine decarboxylase subunit VHS3-like [Cucumis melo var. m... [more]
KAA0050091.11.5e-0966.13prostatic spermine-binding protein-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BPS51.9e-47100.00Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A1S4E1H34.0e-45100.00phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
A0A5D3DQ884.8e-1461.05Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
A0A1S3C4K14.8e-1461.05phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo OX=3... [more]
A0A5A7T1P14.2e-1048.11Phosphopantothenoylcysteine decarboxylase subunit VHS3-like OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C020364.1MELO3C020364.1mRNA