MELO3C020343.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C020343.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr05: 11461443 .. 11462073 (+)
RNA-Seq Expression	MELO3C020343.jh1
Synteny	MELO3C020343.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAAGGCCCTAGGCTACGGGGAGATCAGAGCAAGAGGGAAGGCCTAGACGAATTCTTCGTCAATTTCATCGACCCTCGTGTAAACGAGTTCTTTCTGTGTTCAAGGTCGAGCGAGGAGCGGAACCTAGCCCTTTCCTTTCTTTGCTTTTGTTCCGAAACTCAGTCGGGGAATAGCTGATCCTATGCAAACAAGAACGAGATCTTTCCGCCAGCAAGTCTCGGAGGATTTACCGGTCACGGGCAACCGTAGAACCAACGAGCATCCCGCAGGCGAGGAAGCAAACAAGCGAATAGAAAAGTTCAGTCAGGAAAGTAATGCCGAGATCCGGGCCGGGGAGTTTTTCCGCGATGAGATAGAATCGAGGTCGGACCGGAGAGGGAACCTCGAAGGGCACAAGAGAAAAGCCAATAATCATCACCCCAACCAAAACCAAATGAGAAAGGCCCTCAGTCAAATGGAAGAAGGAAATGGAATGGTCTCTTTGACTAACTCGAATCGACGAAAGCCTGACCGACCGGTCCGAAGACCTGTCCCCTCTAGTCTAGAAAGGGATGAGGCTGACTCTCTGCTCCGTGCTAGTTTCATTCTGGAATAA

mRNA sequence

ATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAAGGCCCTAGGCTACGGGGAGATCAGAGCAAGAGGGAAGGCCTAGACGAATTCTTCGTCAATTTCATCGACCCTCGTGTAAACGAGTTCTTTCTGTGTTCAAGTCGGGGAATAGCTGATCCTATGCAAACAAGAACGAGATCTTTCCGCCAGCAAGTCTCGGAGGATTTACCGGTCACGGGCAACCGTAGAACCAACGAGCATCCCGCAGGCGAGGAAGCAAACAAGCGAATAGAAAAGTTCAGTCAGGAAAGTAATGCCGAGATCCGGGCCGGGGAGTTTTTCCGCGATGAGATAGAATCGAGGTCGGACCGGAGAGGGAACCTCGAAGGGCACAAGAGAAAAGCCAATAATCATCACCCCAACCAAAACCAAATGAGAAAGGCCCTCAGTCAAATGGAAGAAGGAAATGGAATGGTCTCTTTGACTAACTCGAATCGACGAAAGCCTGACCGACCGGTCCGAAGACCTGTCCCCTCTAGTCTAGAAAGGGATGAGGCTGACTCTCTGCTCCGTGCTAGTTTCATTCTGGAATAA

Coding sequence (CDS)

ATGGAAACAGCAACTAACTATGGCTCTTGGCCCAGACAAGGCCCTAGGCTACGGGGAGATCAGAGCAAGAGGGAAGGCCTAGACGAATTCTTCGTCAATTTCATCGACCCTCGTGTAAACGAGTTCTTTCTGTGTTCAAGTCGGGGAATAGCTGATCCTATGCAAACAAGAACGAGATCTTTCCGCCAGCAAGTCTCGGAGGATTTACCGGTCACGGGCAACCGTAGAACCAACGAGCATCCCGCAGGCGAGGAAGCAAACAAGCGAATAGAAAAGTTCAGTCAGGAAAGTAATGCCGAGATCCGGGCCGGGGAGTTTTTCCGCGATGAGATAGAATCGAGGTCGGACCGGAGAGGGAACCTCGAAGGGCACAAGAGAAAAGCCAATAATCATCACCCCAACCAAAACCAAATGAGAAAGGCCCTCAGTCAAATGGAAGAAGGAAATGGAATGGTCTCTTTGACTAACTCGAATCGACGAAAGCCTGACCGACCGGTCCGAAGACCTGTCCCCTCTAGTCTAGAAAGGGATGAGGCTGACTCTCTGCTCCGTGCTAGTTTCATTCTGGAATAA

Protein sequence

METATNYGSWPRQGPRLRGDQSKREGLDEFFVNFIDPRVNEFFLCSSRGIADPMQTRTRSFRQQVSEDLPVTGNRRTNEHPAGEEANKRIEKFSQESNAEIRAGEFFRDEIESRSDRRGNLEGHKRKANNHHPNQNQMRKALSQMEEGNGMVSLTNSNRRKPDRPVRRPVPSSLERDEADSLLRASFILE

Homology

[Close]

BLAST of MELO3C020343.jh1 vs. NCBI nr
Match: KAA0048119.1 (uncharacterized protein E6C27_scaffold49288G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.23e-12
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 1   METATNYGSWPRQGPRLRGDQSKREGLDEFFVNFIDPRVNEFFLCSSRGIADP-----MQ 60
           METATNYGSWPRQGPRLRGD+SKREGLDEFF+     R    F   ++  ++P       
Sbjct: 83  METATNYGSWPRQGPRLRGDRSKREGLDEFFLGSSGERSQ--FAAENKTGSEPTFVRFFS 142

Query: 61  TRTRSFRQQVSEDLP 70
           T+  SFR  V   LP
Sbjct: 143 TKHGSFRITVGRWLP 155

[Close]

BLAST of MELO3C020343.jh1 vs. NCBI nr
Match: KAG9140584.1 (hypothetical protein Leryth_024566 [Lithospermum erythrorhizon])

HSP 1 Score: 57.8 bits (138), Expect = 2.67e-07
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1  METATNYGSWPRQGPRLRGDQSKREGLDEFFV 32
          METATNYGSWPRQ PR RGD+S+RE LD+ F+
Sbjct: 1  METATNYGSWPRQRPRRRGDRSQRERLDDVFI 32

[Close]

BLAST of MELO3C020343.jh1 vs. NCBI nr
Match: KAG8375566.1 (hypothetical protein BUALT_Bualt10G0113900 [Buddleja alternifolia])

HSP 1 Score: 57.4 bits (137), Expect = 5.38e-07
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 1  METATNYGSWPRQGPRLRGDQSKREGLDEFFV 32
          MET TNYGSWPRQ PR RGD+SKRE LD+ F+
Sbjct: 31 METPTNYGSWPRQRPRRRGDRSKRERLDDVFI 62

[Close]

BLAST of MELO3C020343.jh1 vs. NCBI nr
Match: CAB3504466.1 (unnamed protein product [Digitaria exilis])

HSP 1 Score: 57.8 bits (138), Expect = 6.54e-07
Identity = 33/73 (45.21%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 1   METATNYGSWPRQGPRLRGDQSKREGLDEFFVNFIDPRVN---EFFLCSSRGIADPMQTR 60
           METATNYGSWPRQ PR RGDQ+K+  LD+        R     E    S R       T+
Sbjct: 42  METATNYGSWPRQRPRRRGDQNKKSRLDDDAQGLAGERSQSAAENKTASERTFVRFFSTK 101

Query: 61  TRSFRQQVSEDLP 70
            RS R+ V   LP
Sbjct: 102 HRSLRRTVGRWLP 114

[Close]

BLAST of MELO3C020343.jh1 vs. NCBI nr
Match: KAF5938786.1 (hypothetical protein HYC85_023045 [Camellia sinensis])

HSP 1 Score: 54.7 bits (130), Expect = 4.04e-06
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 1  METATNYGSWPRQGPRLRGDQSKREGLDEFFV 32
          METATNYGSWPRQ PR RGD+S RE LD+  +
Sbjct: 1  METATNYGSWPRQRPRRRGDRSNRERLDDVVI 32

[Close]

BLAST of MELO3C020343.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U3U3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold49288G00030 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.96e-13
Identity = 40/75 (53.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 1   METATNYGSWPRQGPRLRGDQSKREGLDEFFVNFIDPRVNEFFLCSSRGIADP-----MQ 60
           METATNYGSWPRQGPRLRGD+SKREGLDEFF+     R    F   ++  ++P       
Sbjct: 83  METATNYGSWPRQGPRLRGDRSKREGLDEFFLGSSGERSQ--FAAENKTGSEPTFVRFFS 142

Query: 61  TRTRSFRQQVSEDLP 70
           T+  SFR  V   LP
Sbjct: 143 TKHGSFRITVGRWLP 155

[Close]

BLAST of MELO3C020343.jh1 vs. ExPASy TrEMBL
Match: A0A7J7GHC6 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_023045 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.96e-06
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 0


Query: 1  METATNYGSWPRQGPRLRGDQSKREGLDEFFV 32
          METATNYGSWPRQ PR RGD+S RE LD+  +
Sbjct: 1  METATNYGSWPRQRPRRRGDRSNRERLDDVVI 32

[Close]

BLAST of MELO3C020343.jh1 vs. ExPASy TrEMBL
Match: A0A453NT49 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.32e-06
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  METATNYGSWPRQGPRLRGDQSKREGLDE 29
          METATNYGSWPRQ PR RGDQ+K+  LD+
Sbjct: 42 METATNYGSWPRQRPRRRGDQNKKSRLDD 70

[Close]

BLAST of MELO3C020343.jh1 vs. ExPASy TrEMBL
Match: A0A5C7GNT8 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028282 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 6.64e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  METATNYGSWPRQGPRLRGDQSKREGLDE 29
          METATNYGSWPRQ PR RGD+S RE LD+
Sbjct: 1  METATNYGSWPRQRPRRRGDRSNRERLDD 29

[Close]

BLAST of MELO3C020343.jh1 vs. ExPASy TrEMBL
Match: A0A5C7GQF6 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027771 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 7.62e-06
Identity = 23/29 (79.31%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  METATNYGSWPRQGPRLRGDQSKREGLDE 29
          METATNYGSWPRQ PR RGD+S RE LD+
Sbjct: 1  METATNYGSWPRQRPRRRGDRSNRERLDD 29

The following BLAST results are available for this feature:

BLAST of MELO3C020343.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048119.1	1.23e-12	53.33	uncharacterized protein E6C27_scaffold49288G00030 [Cucumis melo var. makuwa]	[more]
KAG9140584.1	2.67e-07	75.00	hypothetical protein Leryth_024566 [Lithospermum erythrorhizon]	[more]
KAG8375566.1	5.38e-07	75.00	hypothetical protein BUALT_Bualt10G0113900 [Buddleja alternifolia]	[more]
CAB3504466.1	6.54e-07	45.21	unnamed protein product [Digitaria exilis]	[more]
KAF5938786.1	4.04e-06	71.88	hypothetical protein HYC85_023045 [Camellia sinensis]	[more]

BLAST of MELO3C020343.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C020343.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U3U3	5.96e-13	53.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A7J7GHC6	1.96e-06	71.88	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_023045 PE=4 SV=1	[more]
A0A453NT49	4.32e-06	75.86	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 S...	[more]
A0A5C7GNT8	6.64e-06	79.31	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028282 PE=4 SV=1	[more]
A0A5C7GQF6	7.62e-06	79.31	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027771 PE=4 SV=1	[more]

BLAST of MELO3C020343.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..180
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C020343.jh1.t1	MELO3C020343.jh1.t1	mRNA