MELO3C018997 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018997
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrovirus-related Pol polyprotein from transposon 17.6
Location	chr07: 14887581 .. 14887874 (+)
RNA-Seq Expression	MELO3C018997
Synteny	MELO3C018997

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAACCTTAAAGGCGCCAAGTCGTTCCCAACAATGGTGGAGAAGTTGTGTCTGAAATACTTGTCCACCTTCGCAAGATACCCCCAAACTGATATGGTGGAAGGCAAATGTAACCTGGTGGGCCTCAATCGTACACGAACCCTTCATCAAAACAAAGAGGAAGAACACCACCAGAAGGCACAGAGGCAACAAAGTGACATTGATGATGATGCTAATACTTCACCTCCATTAACCTCAGAGGTAAAGTTTGACCCAACCAAAGATGACCAACCTATCAAGAACCCTCTGTGA

mRNA sequence

ATGAGGAACCTTAAAGGCGCCAAGTCGTTCCCAACAATGGTGGAGAAGTTGTGTCTGAAATACTTGTCCACCTTCGCAAGATACCCCCAAACTGATATGGTGGAAGGCAAATGTAACCTGGTGGGCCTCAATCGTACACGAACCCTTCATCAAAACAAAGAGGAAGAACACCACCAGAAGGCACAGAGGCAACAAAGTGACATTGATGATGATGCTAATACTTCACCTCCATTAACCTCAGAGGTAAAGTTTGACCCAACCAAAGATGACCAACCTATCAAGAACCCTCTGTGA

Coding sequence (CDS)

ATGAGGAACCTTAAAGGCGCCAAGTCGTTCCCAACAATGGTGGAGAAGTTGTGTCTGAAATACTTGTCCACCTTCGCAAGATACCCCCAAACTGATATGGTGGAAGGCAAATGTAACCTGGTGGGCCTCAATCGTACACGAACCCTTCATCAAAACAAAGAGGAAGAACACCACCAGAAGGCACAGAGGCAACAAAGTGACATTGATGATGATGCTAATACTTCACCTCCATTAACCTCAGAGGTAAAGTTTGACCCAACCAAAGATGACCAACCTATCAAGAACCCTCTGTGA

Protein sequence

MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQKAQRQQSDIDDDANTSPPLTSEVKFDPTKDDQPIKNPL

Homology

[Close]

BLAST of MELO3C018997 vs. NCBI nr
Match: KAA0045334.1 (hypothetical protein E6C27_scaffold316G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.0e-36
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 13 MVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQKAQRQQSDIDDDA 72
          MVEKL LKYLST ARYPQTDMV GKCNLVGLNRTRTLHQNKEEEHHQKAQRQQSDIDDDA
Sbjct: 1  MVEKLSLKYLSTLARYPQTDMVGGKCNLVGLNRTRTLHQNKEEEHHQKAQRQQSDIDDDA 60

Query: 73 NTSPPLTSEVKFDPTKDDQPIKNPL 98
          NTSPPLTSEVKFDPTKDDQPIKNPL
Sbjct: 61 NTSPPLTSEVKFDPTKDDQPIKNPL 85

[Close]

BLAST of MELO3C018997 vs. NCBI nr
Match: KAA0063168.1 (hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.9e-15
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 1   MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQK 60
           MRN KG+KSFPTM +K C KYLST ARYPQTDMV GKCN+  LNR RTL+QNKEEE   K
Sbjct: 131 MRNPKGSKSFPTMAKKFCQKYLSTLARYPQTDMVGGKCNMASLNRIRTLNQNKEEECQGK 190

Query: 61  AQRQQSDIDDDANTSPPLTSEVKFDPTKDDQPI 94
            + ++  +  DA +       + +DP   D PI
Sbjct: 191 VEPKK--VTKDATSVDSDLPLIVYDPLFQDIPI 221

[Close]

BLAST of MELO3C018997 vs. NCBI nr
Match: KAA0054399.1 (hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa] >TYJ96826.1 hypothetical protein E5676_scaffold2750G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1   MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQK 60
           M++ K    FP+ VEKLCLKYL T A+YPQ  M  G+ NL GL+R  +LHQNKEEE  QK
Sbjct: 110 MKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQK 169

Query: 61  AQRQQ--SDIDDDANTSPP--LTSEVKFDPTKDDQPIKNPL 98
            Q+Q+      D    SPP   TS ++ D TK+ +   +PL
Sbjct: 170 TQKQRRPESESDKVEKSPPHQSTSRIEVDATKEIRYDPSPL 209

[Close]

BLAST of MELO3C018997 vs. NCBI nr
Match: KAA0040817.1 (hypothetical protein E6C27_scaffold333G00350 [Cucumis melo var. makuwa] >TYK17794.1 hypothetical protein E5676_scaffold306G00400 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 1   MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQK 60
           M + KG K FP  +EKLCLKY+ +    PQ +MVEG+C+L GLNR  T +QNKEEE   K
Sbjct: 9   MEHPKGVKPFPKTMEKLCLKYIPSLKELPQENMVEGRCSLAGLNRVITFYQNKEEERCIK 68

Query: 61  A-QRQQSDIDDDANTSPPLTSEVKFDPTKDDQPIKN 96
              +++ + D + +TSPP  S  +   +    PIKN
Sbjct: 69  TLGKKKLEEDSEGDTSPPPPSLKRKGRSTSSPPIKN 104

[Close]

BLAST of MELO3C018997 vs. NCBI nr
Match: KAA0060350.1 (hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK22100.1 hypothetical protein E5676_scaffold318G00890 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQ 60
           M + +GAK FPT +EKLC KYL T ARYP+ +M  G+ NL GLNR RTLH NKEEE  Q
Sbjct: 54  MGHFEGAKPFPTTMEKLCFKYLPTLARYPKIEM-GGRVNLAGLNRLRTLHLNKEEELRQ 111

[Close]

BLAST of MELO3C018997 vs. ExPASy TrEMBL
Match: A0A5A7TQD8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001090 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.0e-37
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 13 MVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQKAQRQQSDIDDDA 72
          MVEKL LKYLST ARYPQTDMV GKCNLVGLNRTRTLHQNKEEEHHQKAQRQQSDIDDDA
Sbjct: 1  MVEKLSLKYLSTLARYPQTDMVGGKCNLVGLNRTRTLHQNKEEEHHQKAQRQQSDIDDDA 60

Query: 73 NTSPPLTSEVKFDPTKDDQPIKNPL 98
          NTSPPLTSEVKFDPTKDDQPIKNPL
Sbjct: 61 NTSPPLTSEVKFDPTKDDQPIKNPL 85

[Close]

BLAST of MELO3C018997 vs. ExPASy TrEMBL
Match: A0A5A7V6C0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold381G00540 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.4e-15
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 0


Query: 1   MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQK 60
           MRN KG+KSFPTM +K C KYLST ARYPQTDMV GKCN+  LNR RTL+QNKEEE   K
Sbjct: 131 MRNPKGSKSFPTMAKKFCQKYLSTLARYPQTDMVGGKCNMASLNRIRTLNQNKEEECQGK 190

Query: 61  AQRQQSDIDDDANTSPPLTSEVKFDPTKDDQPI 94
            + ++  +  DA +       + +DP   D PI
Sbjct: 191 VEPKK--VTKDATSVDSDLPLIVYDPLFQDIPI 221

[Close]

BLAST of MELO3C018997 vs. ExPASy TrEMBL
Match: A0A5A7ULS0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00200 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.2e-11
Identity = 48/101 (47.52%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1   MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQK 60
           M++ K    FP+ VEKLCLKYL T A+YPQ  M  G+ NL GL+R  +LHQNKEEE  QK
Sbjct: 110 MKHYKDVLPFPSTVEKLCLKYLPTLAKYPQIKM-SGRVNLAGLSRISSLHQNKEEERCQK 169

Query: 61  AQRQQ--SDIDDDANTSPP--LTSEVKFDPTKDDQPIKNPL 98
            Q+Q+      D    SPP   TS ++ D TK+ +   +PL
Sbjct: 170 TQKQRRPESESDKVEKSPPHQSTSRIEVDATKEIRYDPSPL 209

[Close]

BLAST of MELO3C018997 vs. ExPASy TrEMBL
Match: A0A5A7TGV6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00400 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 43/96 (44.79%), Postives = 59/96 (61.46%), Query Frame = 0


Query: 1   MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQK 60
           M + KG K FP  +EKLCLKY+ +    PQ +MVEG+C+L GLNR  T +QNKEEE   K
Sbjct: 9   MEHPKGVKPFPKTMEKLCLKYIPSLKELPQENMVEGRCSLAGLNRVITFYQNKEEERCIK 68

Query: 61  A-QRQQSDIDDDANTSPPLTSEVKFDPTKDDQPIKN 96
              +++ + D + +TSPP  S  +   +    PIKN
Sbjct: 69  TLGKKKLEEDSEGDTSPPPPSLKRKGRSTSSPPIKN 104

[Close]

BLAST of MELO3C018997 vs. ExPASy TrEMBL
Match: A0A5D3DFD3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00890 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.0e-10
Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 1   MRNLKGAKSFPTMVEKLCLKYLSTFARYPQTDMVEGKCNLVGLNRTRTLHQNKEEEHHQ 60
           M + +GAK FPT +EKLC KYL T ARYP+ +M  G+ NL GLNR RTLH NKEEE  Q
Sbjct: 54  MGHFEGAKPFPTTMEKLCFKYLPTLARYPKIEM-GGRVNLAGLNRLRTLHLNKEEELRQ 111

The following BLAST results are available for this feature:

BLAST of MELO3C018997 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045334.1	1.0e-36	96.47	hypothetical protein E6C27_scaffold316G001090 [Cucumis melo var. makuwa]	[more]
KAA0063168.1	2.9e-15	54.84	hypothetical protein E6C27_scaffold381G00540 [Cucumis melo var. makuwa]	[more]
KAA0054399.1	1.3e-10	47.52	hypothetical protein E6C27_scaffold24G001450 [Cucumis melo var. makuwa] >TYJ9682...	[more]
KAA0040817.1	2.2e-10	44.79	hypothetical protein E6C27_scaffold333G00350 [Cucumis melo var. makuwa] >TYK1779...	[more]
KAA0060350.1	1.8e-09	62.71	hypothetical protein E6C27_scaffold22G001410 [Cucumis melo var. makuwa] >TYK2210...	[more]

BLAST of MELO3C018997 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQD8	5.0e-37	96.47	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6C0	1.4e-15	54.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7ULS0	6.2e-11	47.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TGV6	1.1e-10	44.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFD3	9.0e-10	62.71	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C018997 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018997.1	MELO3C018997.1	mRNA