MELO3C018972 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018972
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Classical arabinogalactan protein 9
Location	chr07: 14188328 .. 14189181 (-)
RNA-Seq Expression	MELO3C018972
Synteny	MELO3C018972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTGCAAACCCTTTTATACTCTCTCTTTTAACATCTCTCTCTATCTTTTGTTTGGTAGAGAGAATGAAAATGGGTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCCTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCAGCAGCATCCCCACCTCCCGCCACCCCTCCTCCAGCAACCCCACCACCGGCTACCCCTCCTCCAGCCACTCCACCACCTGCTTCGACCCCACCATCATCACCTCCGAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACTGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCGTCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAGCAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGAAGGAAATGGAGCGGCAAGCGTTAGCCGAGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGATATTTGCTTAGAGCGATTGAGTTGAAACGACACACAGGGTGGGGTGAGATCCATTTTGGTGTTGGTTTTGATTATTGAAATGGAAAAATTTGATATTTGATATTTATGTTAATTGTAGTGATTGTTAATTTCTCCTTGATTATAACTTCTTCTCAATATTTGTGTATGGTATTGTGTTTGGAGTTTTGATTATTATTGGTTTTCTTCGGTGATTCATTATTTTTATGTGTGGGATACGTGGTTATTGTAGATGGATATCATTGTGTACATCCAATCATGAATAAACATAGATTTCTATT

mRNA sequence

CTCTTTGCAAACCCTTTTATACTCTCTCTTTTAACATCTCTCTCTATCTTTTGTTTGGTAGAGAGAATGAAAATGGGTTCCAATTTGTAATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCCTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCAGCAGCATCCCCACCTCCCGCCACCCCTCCTCCAGCAACCCCACCACCGGCTACCCCTCCTCCAGCCACTCCACCACCTGCTTCGACCCCACCATCATCACCTCCGAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACTGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCGTCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAGCAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGAAGGAAATGGAGCGGCAAGCGTTAGCCGAGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGATATTTGCTTAGAGCGATTGAGTTGAAACGACACACAGGGTGGGGTGAGATCCATTTTGGTGTTGGTTTTGATTATTGAAATGGAAAAATTTGATATTTGATATTTATGTTAATTGTAGTGATTGTTAATTTCTCCTTGATTATAACTTCTTCTCAATATTTGTGTATGGTATTGTGTTTGGAGTTTTGATTATTATTGGTTTTCTTCGGTGATTCATTATTTTTATGTGTGGGATACGTGGTTATTGTAGATGGATATCATTGTGTACATCCAATCATGAATAAACATAGATTTCTATT

Coding sequence (CDS)

ATGTTTTTAGCCTTATTTGCCACTTCTTGTATGGCTCAAGCTCCAGGTGCTGCTCCGGCTCAGCCACCCTCCACCCCCGCCGTCCCTCCCCCGTCTACTCCTCCCCCAGCAGCATCCCCACCTCCCGCCACCCCTCCTCCAGCAACCCCACCACCGGCTACCCCTCCTCCAGCCACTCCACCACCTGCTTCGACCCCACCATCATCACCTCCGAGCCAGCCCCCAGCTTCACCTCCTACATCTCCACCACCATCATCACCTAGCTCGCCTCCAACTGCGCCACCAAAGGAGGGTCCAATCTCACCTCCGACTTCGTCTCCTCCATCACCACCACCAGAAGGGAATGTCCCAACAAGCAGCCCTGGACCAAGCCCACCGCCACCCCCACCGGAAGGAAATGGAGCGGCAAGCGTTAGCCGAGGAATGATGGTGGGTGGTGCCGTGGCCGGAGCTTTCTTGGCAATGATATTTGCTTAG

Protein sequence

MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATPPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA

Homology

[Close]

BLAST of MELO3C018972 vs. NCBI nr
Match: TYK14854.1 (vegetative cell wall protein gp1 [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 3.5e-58
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 60
           MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP
Sbjct: 9   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 68

Query: 61  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 120
           PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS
Sbjct: 69  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 128

Query: 121 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA
Sbjct: 129 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

[Close]

BLAST of MELO3C018972 vs. NCBI nr
Match: XP_008455676.1 (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 235.3 bits (599), Expect = 3.5e-58
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 60
           MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP
Sbjct: 7   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 66

Query: 61  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 120
           PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS
Sbjct: 67  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 126

Query: 121 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA
Sbjct: 127 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

[Close]

BLAST of MELO3C018972 vs. NCBI nr
Match: KAA0053440.1 (classical arabinogalactan protein 9 [Cucumis melo var. makuwa])

HSP 1 Score: 234.2 bits (596), Expect = 7.8e-58
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 60
           MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP
Sbjct: 9   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 68

Query: 61  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 120
           PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPT+S
Sbjct: 69  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTNS 128

Query: 121 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA
Sbjct: 129 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

[Close]

BLAST of MELO3C018972 vs. NCBI nr
Match: XP_023545089.1 (classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 145.6 bits (366), Expect = 3.7e-31
Identity = 124/171 (72.51%), Postives = 136/171 (79.53%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPP------ATPPPATPPPAT 60
           M LA  ATS MAQAPGAAPAQPP+TPAVPPPSTPPPAASPPP      ATPPPATPPPAT
Sbjct: 7   MLLACLATSSMAQAPGAAPAQPPTTPAVPPPSTPPPAASPPPATPPPAATPPPATPPPAT 66

Query: 61  PPPATPPPA----STPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPI---SPPTSSP 120
           PPPATPPPA    +TPPSSPPSQPPA+PPTSP   +P+S PT PPKEGP    SP T+SP
Sbjct: 67  PPPATPPPATPPSATPPSSPPSQPPATPPTSP---APTSSPTPPPKEGPASSPSPSTASP 126

Query: 121 PSPPPEGNVPTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           PSPP EGNVP+ +PGP+  PPPPE NGA S+SR  MVG AV+G  LAM+FA
Sbjct: 127 PSPPTEGNVPSGAPGPN-APPPPEDNGAVSISRVAMVGSAVSGVLLAMVFA 173

[Close]

BLAST of MELO3C018972 vs. NCBI nr
Match: XP_022984561.1 (classical arabinogalactan protein 4-like [Cucurbita maxima])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-30
Identity = 120/162 (74.07%), Postives = 130/162 (80.25%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPP-ATPPPATPPPAT 60
           M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +  PATPPP ATPPPATPPPA 
Sbjct: 9   MVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAV 68

Query: 61  PPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSPPSPPPEGNV 120
            PP S PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SPPSPP EG V
Sbjct: 69  TPPPSQPPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASPPSPPSEGMV 128

Query: 121 PTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           P++SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAM+FA
Sbjct: 129 PSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

[Close]

BLAST of MELO3C018972 vs. ExPASy TrEMBL
Match: A0A5D3CV77 (Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00250 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.7e-58
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 60
           MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP
Sbjct: 9   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 68

Query: 61  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 120
           PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS
Sbjct: 69  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 128

Query: 121 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA
Sbjct: 129 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

[Close]

BLAST of MELO3C018972 vs. ExPASy TrEMBL
Match: A0A1S3C1K1 (vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.7e-58
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 60
           MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP
Sbjct: 7   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 66

Query: 61  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 120
           PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS
Sbjct: 67  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 126

Query: 121 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA
Sbjct: 127 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 164

[Close]

BLAST of MELO3C018972 vs. ExPASy TrEMBL
Match: A0A5A7UE17 (Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G001110 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 3.8e-58
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 60
           MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP
Sbjct: 9   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 68

Query: 61  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 120
           PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPT+S
Sbjct: 69  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTNS 128

Query: 121 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA
Sbjct: 129 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 166

[Close]

BLAST of MELO3C018972 vs. ExPASy TrEMBL
Match: A0A0A0L0L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.9e-58
Identity = 156/158 (98.73%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 60
           MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP
Sbjct: 9   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPPATPPPATPPPATP 68

Query: 61  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTSS 120
           PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPT+S
Sbjct: 69  PPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPTSSPPSPPPEGNVPTNS 128

Query: 121 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAM+FA
Sbjct: 129 PGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMVFA 166

[Close]

BLAST of MELO3C018972 vs. ExPASy TrEMBL
Match: A0A6J1J5L5 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111482820 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 5.1e-31
Identity = 120/162 (74.07%), Postives = 130/162 (80.25%), Query Frame = 0


Query: 1   MFLALFATSCMAQAPGAAPAQPPSTPAVPPPSTPPPAASPPPATPPP-ATPPPATPPPAT 60
           M LALFATS MAQAPGAAPAQPP+TPAVPPPSTPPP  +  PATPPP ATPPPATPPPA 
Sbjct: 9   MVLALFATSSMAQAPGAAPAQPPTTPAVPPPSTPPPVVA--PATPPPAATPPPATPPPAV 68

Query: 61  PPPASTPPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPPT---SSPPSPPPEGNV 120
            PP S PPSSPP+QPPASPPTSP P         PPKEGP S PT   +SPPSPP EG V
Sbjct: 69  TPPPSQPPSSPPTQPPASPPTSPTP---------PPKEGPASSPTPSSASPPSPPSEGMV 128

Query: 121 PTSSPGPSPPPPPPEGNGAASVSRGMMVGGAVAGAFLAMIFA 159
           P++SPGP+ PPPPP  NGAA+VSRG+MVGGAVAGA LAM+FA
Sbjct: 129 PSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

The following BLAST results are available for this feature:

BLAST of MELO3C018972 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK14854.1	3.5e-58	100.00	vegetative cell wall protein gp1 [Cucumis melo var. makuwa]	[more]
XP_008455676.1	3.5e-58	100.00	PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]	[more]
KAA0053440.1	7.8e-58	99.37	classical arabinogalactan protein 9 [Cucumis melo var. makuwa]	[more]
XP_023545089.1	3.7e-31	72.51	classical arabinogalactan protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022984561.1	1.1e-30	74.07	classical arabinogalactan protein 4-like [Cucurbita maxima]	[more]

BLAST of MELO3C018972 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C018972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CV77	1.7e-58	100.00	Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C1K1	1.7e-58	100.00	vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV...	[more]
A0A5A7UE17	3.8e-58	99.37	Classical arabinogalactan protein 9 OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A0A0L0L1	4.9e-58	98.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1	[more]
A0A6J1J5L5	5.1e-31	74.07	classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of MELO3C018972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 62..87 score: 36.15 coord: 39..56 score: 45.56 coord: 15..31 score: 40.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018972.1	MELO3C018972.1	mRNA