MELO3C018923.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C018923.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionLPS-induced tumor necrosis factor alpha factor
Locationchr07: 12110611 .. 12110787 (-)
RNA-Seq ExpressionMELO3C018923.jh1
SyntenyMELO3C018923.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGATGTATCGGCGACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTTCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

mRNA sequence

ATGGGAGATGTATCGGCGACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTTCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

Coding sequence (CDS)

ATGGGAGATGTATCGGCGACTTTGAAGATGGCGATTGACTGTGCTTCGGCAGTGGCAATGGGTGCATCGGTGGTTATGACAGTGGCACCAATGTTGACCCCAGTTGTTGCTCCTGTCATGGCTTCAACCACTGTTGCTACATCGGTCACTGGTGTTATGGAGATTTTAGGATTTTGA

Protein sequence

MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF
Homology
BLAST of MELO3C018923.jh1 vs. NCBI nr
Match: KAA0054811.1 (hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 7.10e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF 58
          MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF 58

BLAST of MELO3C018923.jh1 vs. NCBI nr
Match: TYJ99647.1 (hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 2.04e-25
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF 58
          MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMA+TTVATSVTGVMEILGF
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF 58

BLAST of MELO3C018923.jh1 vs. NCBI nr
Match: TYK09492.1 (hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.92e-15
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILG 57
          M DVSA LKMA DCA AVA GASVVMTVAPMLTPVVAPVM +  V TSVT V+ +LG
Sbjct: 1  MADVSAALKMAADCAPAVATGASVVMTVAPMLTPVVAPVMVAANVVTSVTVVLRVLG 57

BLAST of MELO3C018923.jh1 vs. NCBI nr
Match: KGN65426.1 (hypothetical protein Csa_019847 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.72e-11
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILG 57
          MGD    LK+A DCA AVA  ++VVMTVAP L PVVAPVM + TV TSVTGV++I G
Sbjct: 19 MGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG 75

BLAST of MELO3C018923.jh1 vs. NCBI nr
Match: KAA0068093.1 (LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26075.1 LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 8.55e-11
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 13  DCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILG 57
           DCA  VA GASVVMTVAPMLTPVVAPVMA+ TVATS+TGVM ILG
Sbjct: 183 DCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITGVMGILG 227

BLAST of MELO3C018923.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UMM6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00990 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.44e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF 58
          MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF 58

BLAST of MELO3C018923.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BKI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00240 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 9.87e-26
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILGF 58
          MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMA+TTVATSVTGVMEILGF
Sbjct: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMAATTVATSVTGVMEILGF 58

BLAST of MELO3C018923.jh1 vs. ExPASy TrEMBL
Match: A0A5D3CE01 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G00920 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.35e-15
Identity = 43/57 (75.44%), Postives = 46/57 (80.70%), Query Frame = 0

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILG 57
          M DVSA LKMA DCA AVA GASVVMTVAPMLTPVVAPVM +  V TSVT V+ +LG
Sbjct: 1  MADVSAALKMAADCAPAVATGASVVMTVAPMLTPVVAPVMVAANVVTSVTVVLRVLG 57

BLAST of MELO3C018923.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LZP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.32e-12
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MGDVSATLKMAIDCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILG 57
          MGD    LK+A DCA AVA  ++VVMTVAP L PVVAPVM + TV TSVTGV++I G
Sbjct: 19 MGDFGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG 75

BLAST of MELO3C018923.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DRF6 (LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00340 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.14e-11
Identity = 38/45 (84.44%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 13  DCASAVAMGASVVMTVAPMLTPVVAPVMASTTVATSVTGVMEILG 57
           DCA  VA GASVVMTVAPMLTPVVAPVMA+ TVATS+TGVM ILG
Sbjct: 183 DCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITGVMGILG 227

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054811.17.10e-26100.00hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa][more]
TYJ99647.12.04e-2598.28hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa][more]
TYK09492.16.92e-1575.44hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa][more]
KGN65426.11.72e-1164.91hypothetical protein Csa_019847 [Cucumis sativus][more]
KAA0068093.18.55e-1184.44LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UMM63.44e-26100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BKI79.87e-2698.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3CE013.35e-1575.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LZP78.32e-1264.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G420870 PE=4 SV=1[more]
A0A5D3DRF64.14e-1184.44LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=11... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018923.jh1.t1MELO3C018923.jh1.t1mRNA