MELO3C018835 (gene) Melon (DHL92) v4

Overview


Name	MELO3C018835
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNase III domain-containing protein
Location	chr01: 3211809 .. 3212820 (-)
RNA-Seq Expression	MELO3C018835
Synteny	MELO3C018835

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGTAGGTAAAGTTTTAATATTTTTAGTCATAGAAGGAAAGCAAAAATATATATACACAGACGTCATTGATGTTATCACTAACCATTTGATGTCCATAAAGAATTGGTATAACACATAAGTTCTATTAATCAATTGGCTTATTGCAATAATGAAAATGATTGACTTCTTCTATAGTATTTTGTACTTTTATCATTTAGAATTGGAATCTTTTTGCCAAATAAAGTCATAATATTTTGGAGTTTTGAATTAAATTTCAAAACATAATCTTTAGTTCAGAAGAAAATAAAAAAAAAATGAAAAAAAAAATGCACATATAGTTTGGTTTTCATTTTTATTTTTGTATCAGTTAACTAATTAACTGAGATGACAGATAGAAGAGTTTGGTAGAAGTATAGAGGAATATCCATTACATTCTAATGGAATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGGTACTTACTATTTATACTCAACTATTATTCCAATGTATTCCGTGTTTCGTTTTATCTTTATGACTTCATTCAACTATTACGATTATCTAATTAGAGACGAAAAAAAGATGTTTTAAAAACTTAAGTGAGTAAACAAGAACATAACTTAAACTAGATCTAATCGTTGGTTTGAACTAATTTAAAGAAAGATGAGACAAAGGTTTTGGATTATGTGTAGATATTTAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

mRNA sequence

TTAGTAGGTAAAGTTTTAATATTTTTAGTCATAGAAGGAAAGCAAAAATATATATACACAGACGTCATTGATGTTATCACTAACCATTTGATGTCCATAAAGAATTGGTATAACACATAAGTTCTATTAATCAATTGGCTTATTGCAATAATGAAAATGATTGACTTCTTCTATAGTATTTTGTACTTTTATCATTTAGAATTGGAATCTTTTTGCCAAATAAAGTCATAATATTTTGGAGTTTTGAATTAAATTTCAAAACATAATCTTTAGTTCAGAAGAAAATAAAAAAAAAATGAAAAAAAAAATGCACATATAGTTTGGTTTTCATTTTTATTTTTGTATCAGTTAACTAATTAACTGAGATGACAGATAGAAGAGTTTGGTAGAAGTATAGAGGAATATCCATTACATTCTAATGGAATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

Coding sequence (CDS)

ATGATAAAAGCCCCAAAAGTCCTAGCCGACATTGTTGAATCAACCATTGGAGCTGTTTTCGCCGATAGCAACTCCATTGACATTGTTTGGAAGGAATTAATGGAGCCATTGATAACATTGAAGACAATGAAGAAACATCCAATGACGGAATTGACAGAAATGTGTCAAAAGAGAAACCTGAAGTTGGAGTTCAGAGATCGTTGGCAGGAAACAAAAGAAATAGAAGTTTTGATAGAGAAACAACTTGTTGGTAAAGGAAGTTATCGCAAAAAGCTTATCGCACAAAATAGAGCTGCTAAAAATGCTTTGGACAACTTAGACGCATTTTTTCCACAATTTAATCAACCTTGTCAACCTATGTAA

Protein sequence

MIKAPKVLADIVESTIGAVFADSNSIDIVWKELMEPLITLKTMKKHPMTELTEMCQKRNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPCQPM

Homology

[Close]

BLAST of MELO3C018835 vs. NCBI nr
Match: XP_008455460.1 (PREDICTED: ribonuclease 3-like protein 3 [Cucumis melo])

HSP 1 Score: 232.3 bits (591), Expect = 2.3e-57
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSNSIDIVW   KELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC
Sbjct: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120

[Close]

BLAST of MELO3C018835 vs. NCBI nr
Match: XP_004144598.1 (ribonuclease 3-like protein 3 [Cucumis sativus] >KGN43500.1 hypothetical protein Csa_020414 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 6.8e-54
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSN ID VW   KELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 153 MIKAPKVLADIVESTIGAVFADSNFIDTVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 212

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           R+LKLEFRDRW+ETKEIEVLIEKQ+VGKGSYRKKLIAQNRAAKNAL+NLD FFPQFNQPC
Sbjct: 213 RSLKLEFRDRWEETKEIEVLIEKQVVGKGSYRKKLIAQNRAAKNALENLDTFFPQFNQPC 272

[Close]

BLAST of MELO3C018835 vs. NCBI nr
Match: XP_038888348.1 (ribonuclease 3-like protein 3 [Benincasa hispida])

HSP 1 Score: 194.9 bits (494), Expect = 4.0e-46
Identity = 100/123 (81.30%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSNSI+ VW   K+LMEPLITLKTMKKHPMTELTE+CQK
Sbjct: 151 MIKAPKVLADIVESTIGAVFADSNSIETVWKIFKDLMEPLITLKTMKKHPMTELTEICQK 210

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNL LEF D W+E KE++V I+KQLVGKGSYRKKLIAQNRAAK+AL+NLD    +FNQPC
Sbjct: 211 RNLNLEFVDCWEERKEVQVFIDKQLVGKGSYRKKLIAQNRAAKDALNNLDRVLGEFNQPC 270

[Close]

BLAST of MELO3C018835 vs. NCBI nr
Match: XP_022136054.1 (ribonuclease 3-like protein 3 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44
Identity = 95/123 (77.24%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           +IKAPK+LADIVESTIGAVF DSNS+D VW   + LMEPLITLKT+K+HPMTELTE+CQK
Sbjct: 158 LIKAPKILADIVESTIGAVFTDSNSMDTVWTIFRGLMEPLITLKTIKRHPMTELTEICQK 217

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLKLEF D W++TKE++V I+KQLVGKGSYRKKLIAQNRAAK+AL+NLD    Q NQPC
Sbjct: 218 RNLKLEFVDSWEKTKEVQVFIDKQLVGKGSYRKKLIAQNRAAKDALNNLDTLLVQINQPC 277

[Close]

BLAST of MELO3C018835 vs. NCBI nr
Match: XP_022969213.1 (ribonuclease 3-like protein 3 [Cucurbita maxima])

HSP 1 Score: 188.0 bits (476), Expect = 4.9e-44
Identity = 98/123 (79.67%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPK+LADIVES IGAVF DSNSID VW   K LMEPLITLKTMK+HPMTELTEMCQK
Sbjct: 144 MIKAPKILADIVESCIGAVFTDSNSIDTVWTIFKGLMEPLITLKTMKRHPMTELTEMCQK 203

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLK EF D W+E KEI VLI+KQLVGKGSY KKLIAQNRAAK+ALDN      QFN+PC
Sbjct: 204 RNLKWEFVDLWEERKEIHVLIDKQLVGKGSYGKKLIAQNRAAKDALDNFHTILGQFNEPC 263

[Close]

BLAST of MELO3C018835 vs. ExPASy Swiss-Prot
Match: Q69KJ0 (Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0358800 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-20
Identity = 57/113 (50.44%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVW---KELMEPLITLKTMKKHPMTELTEMCQ 60
           ++  PKVL D+VES IGA++ DSN + +IVW   ++L +PLI+L+T+ KHP++EL E CQ
Sbjct: 160 LLDPPKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLGKHPVSELFEFCQ 219

Query: 61  K--RNLKLEFRDRWQETKEIEVLIEKQLVGKGSY-RKKLIAQNRAAKNALDNL 107
           K  R +K+  +D W +   +EVLI+ ++VG+ +Y +KK IAQNRAAK ALD L
Sbjct: 220 KTRRGVKI-VKDEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAKAALDKL 271

[Close]

BLAST of MELO3C018835 vs. ExPASy Swiss-Prot
Match: Q9SP32 (Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 6.7e-12
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 3    KAPKVLADIVESTIGAVFADS-NSIDIVWK---ELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS       WK    L++P++T +T+  HP+ EL E CQ++
Sbjct: 1686 KAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1745

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 104
               LE++  R   T  +EV I+   VG     +K +AQ  AA+NAL
Sbjct: 1746 AEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1791

[Close]

BLAST of MELO3C018835 vs. ExPASy Swiss-Prot
Match: Q8LMR2 (Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL1 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.7e-12
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 3    KAPKVLADIVESTIGAVFADSN-SIDIVWK---ELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS     +VWK    L+ P++T +T+  HP+ EL E CQ++
Sbjct: 1665 KAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQ 1724

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 104
               LE++  R      +EV ++   +G     +K +AQ  AA+NAL
Sbjct: 1725 AEGLEYKASRAGNIATVEVFVDGVQIGVAQNPQKKMAQKLAARNAL 1770

[Close]

BLAST of MELO3C018835 vs. ExPASy Swiss-Prot
Match: Q6ATG6 (Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0271300 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-11
Identity = 45/112 (40.18%), Postives = 69/112 (61.61%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSN-SIDIVWKE---LMEPLITLKTMKKHPMTELTEMCQ 60
           ++KAPKVLADIVE+   AV+ D    ++ +WK    L EP+IT +T+ + P+T L E+CQ
Sbjct: 162 VVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETIDEQPVTMLHELCQ 221

Query: 61  KRNLKLEFRDRWQE--TKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNL 107
           K     +F+  WQ+     + V +  +LVG GS  +K+IA+  AA++A   L
Sbjct: 222 KHGKMAQFK-TWQKGGMTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKL 272

[Close]

BLAST of MELO3C018835 vs. ExPASy Swiss-Prot
Match: Q9LTQ0 (Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RTL2 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSN----SIDIVWKELMEPLITLKTMKK--HPMTELTEM 60
           ++KAPKVLAD+ ES  GAV+ D N     + ++++ L+EP++TL  ++K   P++ L ++
Sbjct: 180 LVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKL 239

Query: 61  CQKRNLKLEFRDRWQETKEIEVL-IEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFP 112
           C K   +++ ++       I V+ ++ +L+  G    K IA+  AAK AL  L   FP
Sbjct: 240 CHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFP 297

[Close]

BLAST of MELO3C018835 vs. ExPASy TrEMBL
Match: A0A1S3C1P1 (ribonuclease 3-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103495618 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 120/123 (97.56%), Postives = 120/123 (97.56%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSNSIDIVW   KELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 60

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC
Sbjct: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120

[Close]

BLAST of MELO3C018835 vs. ExPASy TrEMBL
Match: A0A0A0K1J8 (RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G041940 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.3e-54
Identity = 113/123 (91.87%), Postives = 117/123 (95.12%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPKVLADIVESTIGAVFADSN ID VW   KELMEPLITLKTMKKHPMTELTEMCQK
Sbjct: 153 MIKAPKVLADIVESTIGAVFADSNFIDTVWKIFKELMEPLITLKTMKKHPMTELTEMCQK 212

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           R+LKLEFRDRW+ETKEIEVLIEKQ+VGKGSYRKKLIAQNRAAKNAL+NLD FFPQFNQPC
Sbjct: 213 RSLKLEFRDRWEETKEIEVLIEKQVVGKGSYRKKLIAQNRAAKNALENLDTFFPQFNQPC 272

[Close]

BLAST of MELO3C018835 vs. ExPASy TrEMBL
Match: A0A6J1C375 (ribonuclease 3-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111007843 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.2e-45
Identity = 95/123 (77.24%), Postives = 109/123 (88.62%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           +IKAPK+LADIVESTIGAVF DSNS+D VW   + LMEPLITLKT+K+HPMTELTE+CQK
Sbjct: 158 LIKAPKILADIVESTIGAVFTDSNSMDTVWTIFRGLMEPLITLKTIKRHPMTELTEICQK 217

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLKLEF D W++TKE++V I+KQLVGKGSYRKKLIAQNRAAK+AL+NLD    Q NQPC
Sbjct: 218 RNLKLEFVDSWEKTKEVQVFIDKQLVGKGSYRKKLIAQNRAAKDALNNLDTLLVQINQPC 277

[Close]

BLAST of MELO3C018835 vs. ExPASy TrEMBL
Match: A0A6J1I0C1 (ribonuclease 3-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111468279 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.4e-44
Identity = 98/123 (79.67%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           MIKAPK+LADIVES IGAVF DSNSID VW   K LMEPLITLKTMK+HPMTELTEMCQK
Sbjct: 144 MIKAPKILADIVESCIGAVFTDSNSIDTVWTIFKGLMEPLITLKTMKRHPMTELTEMCQK 203

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLK EF D W+E KEI VLI+KQLVGKGSY KKLIAQNRAAK+ALDN      QFN+PC
Sbjct: 204 RNLKWEFVDLWEERKEIHVLIDKQLVGKGSYGKKLIAQNRAAKDALDNFHTILGQFNEPC 263

[Close]

BLAST of MELO3C018835 vs. ExPASy TrEMBL
Match: A0A6J1GKQ4 (ribonuclease 3-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111455247 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 5.3e-44
Identity = 97/123 (78.86%), Postives = 104/123 (84.55%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           +IKAPK+LADIVES IGAVF DSNSID VW   K LMEPLITLKTMK+HPMTELTEMCQK
Sbjct: 144 LIKAPKILADIVESCIGAVFTDSNSIDTVWTIFKGLMEPLITLKTMKRHPMTELTEMCQK 203

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFPQFNQPC 120
           RNLK EF D W+E KEI VLI+KQLVGKGSY KKLIAQNRAAK+ALDN      QFN+PC
Sbjct: 204 RNLKWEFVDLWEERKEIHVLIDKQLVGKGSYGKKLIAQNRAAKDALDNFHTILGQFNEPC 263

[Close]

BLAST of MELO3C018835 vs. TAIR 10
Match: AT4G15417.1 (RNAse II-like 1 )

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-27
Identity = 66/114 (57.89%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSNSIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 60
           ++K PKVLADIVESTIGA+F D NS + VW   K L+EP+I L  MK HPMTEL EMCQK
Sbjct: 148 LLKVPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELNEMCQK 207

Query: 61  RNLKLEFRDRWQETKEIEVLIEKQLVGKGSYR-KKLIAQNRAAKNALDNLDAFF 111
           RNLKL  +D W+E +     IE + VG G +  KK  A+N AAKNA+DN   FF
Sbjct: 208 RNLKLTSKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAKFF 261

[Close]

BLAST of MELO3C018835 vs. TAIR 10
Match: AT1G01040.1 (dicer-like 1 )

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-13
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 3    KAPKVLADIVESTIGAVFADS-NSIDIVWK---ELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS       WK    L++P++T +T+  HP+ EL E CQ++
Sbjct: 1686 KAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1745

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 104
               LE++  R   T  +EV I+   VG     +K +AQ  AA+NAL
Sbjct: 1746 AEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1791

[Close]

BLAST of MELO3C018835 vs. TAIR 10
Match: AT1G01040.2 (dicer-like 1 )

HSP 1 Score: 71.6 bits (174), Expect = 4.7e-13
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 3    KAPKVLADIVESTIGAVFADS-NSIDIVWK---ELMEPLITLKTMKKHPMTELTEMCQKR 62
            KAPKVL DIVES  GA+F DS       WK    L++P++T +T+  HP+ EL E CQ++
Sbjct: 1687 KAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQ 1746

Query: 63   NLKLEFR-DRWQETKEIEVLIEKQLVGKGSYRKKLIAQNRAAKNAL 104
               LE++  R   T  +EV I+   VG     +K +AQ  AA+NAL
Sbjct: 1747 AEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNAL 1792

[Close]

BLAST of MELO3C018835 vs. TAIR 10
Match: AT3G20420.1 (RNAse THREE-like protein 2 )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = 0


Query: 1   MIKAPKVLADIVESTIGAVFADSN----SIDIVWKELMEPLITLKTMKK--HPMTELTEM 60
           ++KAPKVLAD+ ES  GAV+ D N     + ++++ L+EP++TL  ++K   P++ L ++
Sbjct: 180 LVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQKQPQPVSMLFKL 239

Query: 61  CQKRNLKLEFRDRWQETKEIEVL-IEKQLVGKGSYRKKLIAQNRAAKNALDNLDAFFP 112
           C K   +++ ++       I V+ ++ +L+  G    K IA+  AAK AL  L   FP
Sbjct: 240 CHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIARLIAAKEALRKLSEVFP 297

[Close]

BLAST of MELO3C018835 vs. TAIR 10
Match: AT3G03300.1 (dicer-like 2 )

HSP 1 Score: 52.0 bits (123), Expect = 3.9e-07
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 0


Query: 2    IKAPKVLADIVESTIGAVFADSN-SIDIVW---KELMEPLITLKTMKKHPMTELTEMCQK 61
            I  PKVL D++ES  GA+F DS  + ++V+   K L+  +IT +T+K HP+ ELTE+CQK
Sbjct: 1274 ISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQK 1333

Query: 62   RNLKL----EFRDRWQETKEIEVLI-------EKQLVGKGSYRKKLIAQNRAAKNALD 105
               +L    +F     E K  E+         +K++  K +Y++ L       KN+LD
Sbjct: 1334 WQFELSKAKDFDSFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVL----NLLKNSLD 1387

The following BLAST results are available for this feature:

BLAST of MELO3C018835 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455460.1	2.3e-57	97.56	PREDICTED: ribonuclease 3-like protein 3 [Cucumis melo]	[more]
XP_004144598.1	6.8e-54	91.87	ribonuclease 3-like protein 3 [Cucumis sativus] >KGN43500.1 hypothetical protein...	[more]
XP_038888348.1	4.0e-46	81.30	ribonuclease 3-like protein 3 [Benincasa hispida]	[more]
XP_022136054.1	1.3e-44	77.24	ribonuclease 3-like protein 3 [Momordica charantia]	[more]
XP_022969213.1	4.9e-44	79.67	ribonuclease 3-like protein 3 [Cucurbita maxima]	[more]

BLAST of MELO3C018835 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q69KJ0	5.1e-20	50.44	Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0...	[more]
Q9SP32	6.7e-12	43.40	Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCL1 PE=1 SV...	[more]
Q8LMR2	8.7e-12	41.51	Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=DCL...	[more]
Q6ATG6	1.5e-11	40.18	Ribonuclease 3-like protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0...	[more]
Q9LTQ0	1.8e-09	33.90	Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RTL2 PE=1 SV=1	[more]

BLAST of MELO3C018835 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1P1	1.1e-57	97.56	ribonuclease 3-like protein 3 OS=Cucumis melo OX=3656 GN=LOC103495618 PE=4 SV=1	[more]
A0A0A0K1J8	3.3e-54	91.87	RNase III domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G041940 P...	[more]
A0A6J1C375	6.2e-45	77.24	ribonuclease 3-like protein 3 OS=Momordica charantia OX=3673 GN=LOC111007843 PE=...	[more]
A0A6J1I0C1	2.4e-44	79.67	ribonuclease 3-like protein 3 OS=Cucurbita maxima OX=3661 GN=LOC111468279 PE=4 S...	[more]
A0A6J1GKQ4	5.3e-44	78.86	ribonuclease 3-like protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111455247 PE=4...	[more]

BLAST of MELO3C018835 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15417.1	4.4e-27	57.89	RNAse II-like 1	[more]
AT1G01040.1	4.7e-13	43.40	dicer-like 1	[more]
AT1G01040.2	4.7e-13	43.40	dicer-like 1	[more]
AT3G20420.1	1.3e-10	33.90	RNAse THREE-like protein 2	[more]
AT3G03300.1	3.9e-07	35.59	dicer-like 2	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036389	Ribonuclease III, endonuclease domain superfamily	GENE3D	1.10.1520.10	Ribonuclease III domain	coord: 1..42 e-value: 9.4E-7 score: 30.5
None	No IPR available	GENE3D	3.30.160.20		coord: 43..110 e-value: 5.4E-10 score: 41.3
None	No IPR available	PANTHER	PTHR14950:SF54	RNASE II-LIKE 1	coord: 1..110
None	No IPR available	PANTHER	PTHR14950	DICER-RELATED	coord: 1..110
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 6..106
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 47..106 e-value: 1.5E-5 score: 25.7
IPR000999	Ribonuclease III domain	PROSITE	PS50142	RNASE_3_2	coord: 1..24 score: 9.448406

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018835.1	MELO3C018835.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
molecular_function	GO:0004525	ribonuclease III activity