MELO3C018828 (gene) Melon (DHL92) v4

Overview
NameMELO3C018828
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPentatricopeptide repeat-containing protein
Locationchr01: 3181431 .. 3182858 (+)
RNA-Seq ExpressionMELO3C018828
SyntenyMELO3C018828
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACACTCCTCCGAGTGGTTACTTCAACTTCTTCAACGATTCCTCAAGAACTCAACTAAAATCCCACAAATTCACGCCCTTCTACTCACCCAAGGCCATCTCTTCAACAATTCCCAAACTTCCTCTAATCCAAAATGCCTCACCACCCTTCTTTACAACACTCTCATCAGAGCCTATCTAACCTTAAACCGCCCTCGTTTTGCCCTCCTTCTCTACACCCAAATGCTCTCCCAACAGACCAAACCCAACTTCCACACTTTCCCTTCAATCATCAAATCCGCCACCATTTATTCCCCTCTTCTCCCCAAATTGATCCACGCACATGCTTTCAAGATTGGCGTTCTCACCGACCCCGTTGTCCTGACATCCTTTGTTTCCTCTTACGGGGACCTTCGTGAACTGGGTAATGCACGTAAGGTGTTTGATGAAATTACCGATCCTTGTATTGTTGCATTTAACTCTATGCTTGATGCTTTTGTCAAAAATGGGGACTTGGGTTCTGCTGTTTTCATGTTTAGGTACATGCCAGAGCGTGATGTGGTTTCTTGGACTAGTGTCGTTAATGGGTTTTGGTGGAATGGGCGCTTTCTTGAGGCTCTCTGGTTTTTTCAGATGATGATGATGAGTGGTTCGGTTAAGCCAAATGAAGCTACTTATGTGAGTGTACTTTCTTCTTGTGCTAATTTAGATGCTGAAGGAGTTCTTTGTCGTGGGAAAGAAGTACATGCTTACATTATTAGAAATGAGGGTGAGTTTAGTGTTTTTATAGGGACGGCGTTGATAGATTTTTATGGGAAGATGGGATTATTAGGATGTGCGAGAACTGTTTTTAATCAAATGAAGAAAAGGGAGGTCTGCACTTGGAATGCAATGATCTCTTCATTTGCATCCAATAGTAGAGAAACAGAGGCATTAGACCTATTTGCCACTATGAAGGTTGAAGGAATACATCCTAATGAGGTTACATTTGTTGCGATTCTCACAGCGTGTGCTCGTGGCAAGCTCGTCAAATTGGGATTGCAGTTATTCCAATCAATGTTGTACGATTTCTCAATTGTACCAATTACTGAGCATTACGTATGTGTGGTTGATCTCTTAGGCAAAGCAGGGCTTTTGCGAGAGGCAACTGAAATCATAGAGTCCATGCCATTTGACCCGGATGCTTCTGTTTTGGGAGCTCTTTTGAGTGCGTGTAAAATTCATGGAGCCATTGAACTGGGGAATGAAGTGGGAAGAAGATTGCTTGTGATGCAGCCACGACATTGTGGTCGGTATGTGACTTTGGCGAGTATGAATGCTGGAGCGGAGAAATGGAATCGTGCTGCAGTTATAAGAAGTGTAATGGCAGACGCCAGGATTCAGAAAACTCCAGCATATAGTAGAGTAGATCCAATGCAAAATTTGGTGCTAATATCACCCTCTTGA

mRNA sequence

ATGTCACACTCCTCCGAGTGGTTACTTCAACTTCTTCAACGATTCCTCAAGAACTCAACTAAAATCCCACAAATTCACGCCCTTCTACTCACCCAAGGCCATCTCTTCAACAATTCCCAAACTTCCTCTAATCCAAAATGCCTCACCACCCTTCTTTACAACACTCTCATCAGAGCCTATCTAACCTTAAACCGCCCTCGTTTTGCCCTCCTTCTCTACACCCAAATGCTCTCCCAACAGACCAAACCCAACTTCCACACTTTCCCTTCAATCATCAAATCCGCCACCATTTATTCCCCTCTTCTCCCCAAATTGATCCACGCACATGCTTTCAAGATTGGCGTTCTCACCGACCCCGTTGTCCTGACATCCTTTGTTTCCTCTTACGGGGACCTTCGTGAACTGGGTAATGCACGTAAGGTGTTTGATGAAATTACCGATCCTTGTATTGTTGCATTTAACTCTATGCTTGATGCTTTTGTCAAAAATGGGGACTTGGGTTCTGCTGTTTTCATGTTTAGGTACATGCCAGAGCGTGATGTGGTTTCTTGGACTAGTGTCGTTAATGGGTTTTGGTGGAATGGGCGCTTTCTTGAGGCTCTCTGGTTTTTTCAGATGATGATGATGAGTGGTTCGGTTAAGCCAAATGAAGCTACTTATGTGAGTGTACTTTCTTCTTGTGCTAATTTAGATGCTGAAGGAGTTCTTTGTCGTGGGAAAGAAGTACATGCTTACATTATTAGAAATGAGGGTGAGTTTAGTGTTTTTATAGGGACGGCGTTGATAGATTTTTATGGGAAGATGGGATTATTAGGATGTGCGAGAACTGTTTTTAATCAAATGAAGAAAAGGGAGGTCTGCACTTGGAATGCAATGATCTCTTCATTTGCATCCAATAGTAGAGAAACAGAGGCATTAGACCTATTTGCCACTATGAAGGTTGAAGGAATACATCCTAATGAGGTTACATTTGTTGCGATTCTCACAGCGTGTGCTCGTGGCAAGCTCGTCAAATTGGGATTGCAGTTATTCCAATCAATGTTGTACGATTTCTCAATTGTACCAATTACTGAGCATTACGTATGTGTGGTTGATCTCTTAGGCAAAGCAGGGCTTTTGCGAGAGGCAACTGAAATCATAGAGTCCATGCCATTTGACCCGGATGCTTCTGTTTTGGGAGCTCTTTTGAGTGCGTGTAAAATTCATGGAGCCATTGAACTGGGGAATGAAGTGGGAAGAAGATTGCTTGTGATGCAGCCACGACATTGTGGTCGGTATGTGACTTTGGCGAGTATGAATGCTGGAGCGGAGAAATGGAATCGTGCTGCAGTTATAAGAAGTGTAATGGCAGACGCCAGGATTCAGAAAACTCCAGCATATAGTAGAGTAGATCCAATGCAAAATTTGGTGCTAATATCACCCTCTTGA

Coding sequence (CDS)

ATGTCACACTCCTCCGAGTGGTTACTTCAACTTCTTCAACGATTCCTCAAGAACTCAACTAAAATCCCACAAATTCACGCCCTTCTACTCACCCAAGGCCATCTCTTCAACAATTCCCAAACTTCCTCTAATCCAAAATGCCTCACCACCCTTCTTTACAACACTCTCATCAGAGCCTATCTAACCTTAAACCGCCCTCGTTTTGCCCTCCTTCTCTACACCCAAATGCTCTCCCAACAGACCAAACCCAACTTCCACACTTTCCCTTCAATCATCAAATCCGCCACCATTTATTCCCCTCTTCTCCCCAAATTGATCCACGCACATGCTTTCAAGATTGGCGTTCTCACCGACCCCGTTGTCCTGACATCCTTTGTTTCCTCTTACGGGGACCTTCGTGAACTGGGTAATGCACGTAAGGTGTTTGATGAAATTACCGATCCTTGTATTGTTGCATTTAACTCTATGCTTGATGCTTTTGTCAAAAATGGGGACTTGGGTTCTGCTGTTTTCATGTTTAGGTACATGCCAGAGCGTGATGTGGTTTCTTGGACTAGTGTCGTTAATGGGTTTTGGTGGAATGGGCGCTTTCTTGAGGCTCTCTGGTTTTTTCAGATGATGATGATGAGTGGTTCGGTTAAGCCAAATGAAGCTACTTATGTGAGTGTACTTTCTTCTTGTGCTAATTTAGATGCTGAAGGAGTTCTTTGTCGTGGGAAAGAAGTACATGCTTACATTATTAGAAATGAGGGTGAGTTTAGTGTTTTTATAGGGACGGCGTTGATAGATTTTTATGGGAAGATGGGATTATTAGGATGTGCGAGAACTGTTTTTAATCAAATGAAGAAAAGGGAGGTCTGCACTTGGAATGCAATGATCTCTTCATTTGCATCCAATAGTAGAGAAACAGAGGCATTAGACCTATTTGCCACTATGAAGGTTGAAGGAATACATCCTAATGAGGTTACATTTGTTGCGATTCTCACAGCGTGTGCTCGTGGCAAGCTCGTCAAATTGGGATTGCAGTTATTCCAATCAATGTTGTACGATTTCTCAATTGTACCAATTACTGAGCATTACGTATGTGTGGTTGATCTCTTAGGCAAAGCAGGGCTTTTGCGAGAGGCAACTGAAATCATAGAGTCCATGCCATTTGACCCGGATGCTTCTGTTTTGGGAGCTCTTTTGAGTGCGTGTAAAATTCATGGAGCCATTGAACTGGGGAATGAAGTGGGAAGAAGATTGCTTGTGATGCAGCCACGACATTGTGGTCGGTATGTGACTTTGGCGAGTATGAATGCTGGAGCGGAGAAATGGAATCGTGCTGCAGTTATAAGAAGTGTAATGGCAGACGCCAGGATTCAGAAAACTCCAGCATATAGTAGAGTAGATCCAATGCAAAATTTGGTGCTAATATCACCCTCTTGA

Protein sequence

MSHSSEWLLQLLQRFLKNSTKIPQIHALLLTQGHLFNNSQTSSNPKCLTTLLYNTLIRAYLTLNRPRFALLLYTQMLSQQTKPNFHTFPSIIKSATIYSPLLPKLIHAHAFKIGVLTDPVVLTSFVSSYGDLRELGNARKVFDEITDPCIVAFNSMLDAFVKNGDLGSAVFMFRYMPERDVVSWTSVVNGFWWNGRFLEALWFFQMMMMSGSVKPNEATYVSVLSSCANLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTALIDFYGKMGLLGCARTVFNQMKKREVCTWNAMISSFASNSRETEALDLFATMKVEGIHPNEVTFVAILTACARGKLVKLGLQLFQSMLYDFSIVPITEHYVCVVDLLGKAGLLREATEIIESMPFDPDASVLGALLSACKIHGAIELGNEVGRRLLVMQPRHCGRYVTLASMNAGAEKWNRAAVIRSVMADARIQKTPAYSRVDPMQNLVLISPS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008455452.15.4e-272100.00PREDICTED: putative pentatricopeptide repeat-containing protein At1g10330 [Cucum... [more]
XP_004144596.17.6e-25895.36putative pentatricopeptide repeat-containing protein At1g10330 [Cucumis sativus][more]
XP_038887445.13.3e-23789.13putative pentatricopeptide repeat-containing protein At1g10330 [Benincasa hispid... [more]
KAA0040231.13.7e-22899.75putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ... [more]
KAG6589154.11.4e-21981.47putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros... [more]
Match NameE-valueIdentityDescription
Q9SY757.7e-12049.89Putative pentatricopeptide repeat-containing protein At1g10330 OS=Arabidopsis th... [more]
Q9FNN71.4e-7637.06Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana OX... [more]
Q9FJY71.4e-7638.55Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX... [more]
P0C8Q79.9e-7535.73Pentatricopeptide repeat-containing protein At5g08305 OS=Arabidopsis thaliana OX... [more]
Q9FIF78.6e-7134.25Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS... [more]
Match NameE-valueIdentityDescription
A0A1S3C1302.6e-272100.00putative pentatricopeptide repeat-containing protein At1g10330 OS=Cucumis melo O... [more]
A0A0A0K5I53.7e-25895.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G043000 PE=4 SV=1[more]
A0A5D3C5L71.8e-22899.75Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa... [more]
A0A6J1ERE54.9e-21881.05putative pentatricopeptide repeat-containing protein At1g10330 OS=Cucurbita mosc... [more]
A0A6J1JN924.1e-21780.84putative pentatricopeptide repeat-containing protein At1g10330 OS=Cucurbita maxi... [more]
Match NameE-valueIdentityDescription
AT1G10330.15.5e-12149.89Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G66520.19.8e-7838.55Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G08510.19.8e-7837.06Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G08305.17.0e-7635.73Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G50270.16.1e-7233.81Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 286..333
e-value: 3.2E-11
score: 43.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 287..321
e-value: 1.5E-7
score: 29.1
coord: 151..182
e-value: 4.8E-5
score: 21.3
coord: 259..286
e-value: 0.0017
score: 16.4
coord: 53..84
e-value: 6.4E-4
score: 17.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 359..383
e-value: 0.3
score: 11.4
coord: 259..285
e-value: 0.013
score: 15.7
coord: 182..211
e-value: 7.1E-5
score: 22.8
coord: 53..78
e-value: 0.07
score: 13.4
coord: 151..180
e-value: 4.6E-5
score: 23.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 149..183
score: 9.514466
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 49..83
score: 9.054091
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 285..319
score: 10.818861
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 233..351
e-value: 3.0E-22
score: 81.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 104..232
e-value: 7.4E-25
score: 89.3
NoneNo IPR availablePANTHERPTHR47929:SF1SUBFAMILY NOT NAMEDcoord: 22..465
NoneNo IPR availablePANTHERPTHR47929FAMILY NOT NAMEDcoord: 22..465

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018828.1MELO3C018828.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding