Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTGACCATTGTTATAAGGAACCCTAACAAGCACTCTTCCATATACTATAACCAATTGATTGAGATGGTGTTGTGTAAGAATCAGCAGATAGAATCACAGATAATGTTGTCTCCGATGATTAGCGAAAAGAATACCACTGTGGACACATCACTGGAGATTAGTGGTGGGGCGGTGTCAGTGGCAAAGGAGTTGGCAAATGAGATGGTGAGAAGTGGGAGTGGATTTTGGCTGAGACTTGTGTTGATGGGAAGAGTTAAATGGAAACTTTGA
mRNA sequence
ATGGCCTTGACCATTGTTATAAGGAACCCTAACAAGCACTCTTCCATATACTATAACCAATTGATTGAGATGGTGTTGTGTAAGAATCAGCAGATAGAATCACAGATAATGTTGTCTCCGATGATTAGCGAAAAGAATACCACTGTGGACACATCACTGGAGATTAGTGGTGGGGCGGTGTCAGTGGCAAAGGAGTTGGCAAATGAGATGGTGAGAAGTGGGAGTGGATTTTGGCTGAGACTTGTGTTGATGGGAAGAGTTAAATGGAAACTTTGA
Coding sequence (CDS)
ATGGCCTTGACCATTGTTATAAGGAACCCTAACAAGCACTCTTCCATATACTATAACCAATTGATTGAGATGGTGTTGTGTAAGAATCAGCAGATAGAATCACAGATAATGTTGTCTCCGATGATTAGCGAAAAGAATACCACTGTGGACACATCACTGGAGATTAGTGGTGGGGCGGTGTCAGTGGCAAAGGAGTTGGCAAATGAGATGGTGAGAAGTGGGAGTGGATTTTGGCTGAGACTTGTGTTGATGGGAAGAGTTAAATGGAAACTTTGA
Protein sequence
MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAVSVAKELANEMVRSGSGFWLRLVLMGRVKWKL
Homology
BLAST of MELO3C014429.jh1 vs. NCBI nr
Match:
KAA0061643.1 (protein YLS9-like [Cucumis melo var. makuwa] >TYK05863.1 protein YLS9-like [Cucumis melo var. makuwa])
HSP 1 Score: 177 bits (448), Expect = 1.50e-55
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV
Sbjct: 12 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 71
Query: 61 SVAKELANEMVRSGSGFWLRLVLMGRVKWKL 91
SVAKELANEMVRSGSGFWLRLVLMGRVKWKL
Sbjct: 72 SVAKELANEMVRSGSGFWLRLVLMGRVKWKL 102
BLAST of MELO3C014429.jh1 vs. NCBI nr
Match:
XP_004140243.1 (NDR1/HIN1-like protein 26 [Cucumis sativus])
HSP 1 Score: 112 bits (280), Expect = 5.00e-29
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
MA TIV RNPNK SSIYY+QL +VL K+QQI Q+MLSP+I+EK TTV+ L+ISG AV
Sbjct: 39 MACTIVTRNPNKLSSIYYDQLTGVVLYKDQQITPQVMLSPVINEKKTTVEIPLKISGAAV 98
Query: 61 S---VAKELANEMVRSGSG--FWLRLVLMGRVKWKL 91
S V +ELANE+VRS FWLR+VLMGRVKWKL
Sbjct: 99 SAVSVTEELANEIVRSTESGLFWLRVVLMGRVKWKL 134
BLAST of MELO3C014429.jh1 vs. NCBI nr
Match:
KGN47958.1 (hypothetical protein Csa_003254 [Cucumis sativus])
HSP 1 Score: 112 bits (280), Expect = 1.37e-28
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
MA TIV RNPNK SSIYY+QL +VL K+QQI Q+MLSP+I+EK TTV+ L+ISG AV
Sbjct: 78 MACTIVTRNPNKLSSIYYDQLTGVVLYKDQQITPQVMLSPVINEKKTTVEIPLKISGAAV 137
Query: 61 S---VAKELANEMVRSGSG--FWLRLVLMGRVKWKL 91
S V +ELANE+VRS FWLR+VLMGRVKWKL
Sbjct: 138 SAVSVTEELANEIVRSTESGLFWLRVVLMGRVKWKL 173
BLAST of MELO3C014429.jh1 vs. NCBI nr
Match:
XP_038899063.1 (NDR1/HIN1-like protein 12 [Benincasa hispida])
HSP 1 Score: 84.7 bits (208), Expect = 9.40e-18
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
M TIV RNPN+ SIYY++LI V +NQQI SQ+ML P++ EK +TV S + GGAV
Sbjct: 91 MQFTIVTRNPNRRVSIYYDRLIAFVSYRNQQITSQVMLPPLVHEKRSTVAMSPVLGGGAV 150
Query: 61 SVAKELANEMVRSGS--GFWLRLVLMGRVKWK 90
+V+ E+AN +V + LR+VL+GR++WK
Sbjct: 151 AVSLEVANGLVTDQAIGVLGLRVVLLGRLRWK 182
BLAST of MELO3C014429.jh1 vs. NCBI nr
Match:
XP_004133755.1 (NDR1/HIN1-like protein 12 [Cucumis sativus])
HSP 1 Score: 79.3 bits (194), Expect = 1.09e-15
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
M TIV RNPN+ SIYY++L V +NQQI SQ++L P+ EK +TV S + GGAV
Sbjct: 90 MQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLGGGAV 149
Query: 61 SVAKELANEMVRSGS--GFWLRLVLMGRVKWK 90
+V+ E+AN +V + LR+VL+GR++WK
Sbjct: 150 AVSLEVANGLVTDQTIGVLGLRVVLLGRLRWK 181
BLAST of MELO3C014429.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3C1N9 (Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00180 PE=4 SV=1)
HSP 1 Score: 177 bits (448), Expect = 7.27e-56
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV
Sbjct: 12 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 71
Query: 61 SVAKELANEMVRSGSGFWLRLVLMGRVKWKL 91
SVAKELANEMVRSGSGFWLRLVLMGRVKWKL
Sbjct: 72 SVAKELANEMVRSGSGFWLRLVLMGRVKWKL 102
BLAST of MELO3C014429.jh1 vs. ExPASy TrEMBL
Match:
A0A0A0KEK5 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421030 PE=4 SV=1)
HSP 1 Score: 112 bits (280), Expect = 6.63e-29
Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
MA TIV RNPNK SSIYY+QL +VL K+QQI Q+MLSP+I+EK TTV+ L+ISG AV
Sbjct: 78 MACTIVTRNPNKLSSIYYDQLTGVVLYKDQQITPQVMLSPVINEKKTTVEIPLKISGAAV 137
Query: 61 S---VAKELANEMVRSGSG--FWLRLVLMGRVKWKL 91
S V +ELANE+VRS FWLR+VLMGRVKWKL
Sbjct: 138 SAVSVTEELANEIVRSTESGLFWLRVVLMGRVKWKL 173
BLAST of MELO3C014429.jh1 vs. ExPASy TrEMBL
Match:
A0A0A0L882 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116630 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 5.26e-16
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
M TIV RNPN+ SIYY++L V +NQQI SQ++L P+ EK +TV S + GGAV
Sbjct: 90 MQFTIVTRNPNRRVSIYYDRLTVFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLGGGAV 149
Query: 61 SVAKELANEMVRSGS--GFWLRLVLMGRVKWK 90
+V+ E+AN +V + LR+VL+GR++WK
Sbjct: 150 AVSLEVANGLVTDQTIGVLGLRVVLLGRLRWK 181
BLAST of MELO3C014429.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3DAX9 (NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00030 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 7.39e-16
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
M TIV RNPN+ SIYY++L V +NQQI SQ++L P+ EK +TV S + GGAV
Sbjct: 90 MQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLGGGAV 149
Query: 61 SVAKELANEMVRSGS--GFWLRLVLMGRVKWK 90
+V+ E+AN +V + LR+VL+GR++WK
Sbjct: 150 AVSLEVANGLVTDQTIGVLGLRVVLLGRLRWK 181
BLAST of MELO3C014429.jh1 vs. ExPASy TrEMBL
Match:
A0A1S3AVC7 (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103483090 PE=4 SV=1)
HSP 1 Score: 79.0 bits (193), Expect = 7.39e-16
Identity = 44/92 (47.83%), Postives = 62/92 (67.39%), Query Frame = 0
Query: 1 MALTIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAV 60
M TIV RNPN+ SIYY++L V +NQQI SQ++L P+ EK +TV S + GGAV
Sbjct: 90 MQFTIVTRNPNRRVSIYYDRLTIFVSYRNQQITSQVILPPLAHEKRSTVAMSPVLGGGAV 149
Query: 61 SVAKELANEMVRSGS--GFWLRLVLMGRVKWK 90
+V+ E+AN +V + LR+VL+GR++WK
Sbjct: 150 AVSLEVANGLVTDQTIGVLGLRVVLLGRLRWK 181
BLAST of MELO3C014429.jh1 vs. TAIR 10
Match:
AT4G01410.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )
HSP 1 Score: 43.9 bits (102), Expect = 8.0e-05
Identity = 27/89 (30.34%), Postives = 50/89 (56.18%), Query Frame = 0
Query: 4 TIVIRNPNKHSSIYYNQLIEMVLCKNQQIESQIMLSPMISEKNTTVDTSLEISGGAVSVA 63
+++ RNPN+ SI+Y++L V K+Q I + L P+ +TV + + G + V+
Sbjct: 98 SVLARNPNRRVSIHYDKLSMYVTYKDQIITPPLPLPPLRLGHKSTVVIAPVMGGNGIPVS 157
Query: 64 KELANEMVRSGS--GFWLRLVLMGRVKWK 91
E+AN + + +R+V+ GR++WK
Sbjct: 158 PEVANGLKNDEAYGVVLMRVVIFGRLRWK 186
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3C1N9 | 7.27e-56 | 100.00 | Protein YLS9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G0... | [more] |
A0A0A0KEK5 | 6.63e-29 | 66.67 | LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421030 PE=4 ... | [more] |
A0A0A0L882 | 5.26e-16 | 47.83 | LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G116630 PE=4 ... | [more] |
A0A5D3DAX9 | 7.39e-16 | 47.83 | NDR1/HIN1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... | [more] |
A0A1S3AVC7 | 7.39e-16 | 47.83 | NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103483090 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G01410.1 | 8.0e-05 | 30.34 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family | [more] |