Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGATGGGAACGAAGAGTTTTCGTCCATATACAGCCAGGGGATTGACATGTCCCAGGAGGATGTACATGCATCACAACCTGCTCACACATCAAACAGTAGGGCCAGATCGAGCAGATTGAAGAGAAAGAGGGGAAGCCAGCAGAAGGGTGAGATTAAAGTCATACATATGGCCCTCAAGTGTATGAATGACCAACTCAAGAAGATTGTCGAGTGGCATGCACGCGCCCTTGCCAATAACACCCACGTGCACCAGGAATTCATACGCCTATTGCGTGAGATGTCGGAACTAAGCAATTTGGATAGGGCATTGTGCCAAAGGCATCTGATGTCTCATATGGACGACATGTGGGGTTTTGTACAAATGACTAACGATGAGAGGCAGAACTTTTGTAGAGTCCTCCTACGAGACTTCTCTAGATAG
mRNA sequence
ATGTCGGATGGGAACGAAGAGTTTTCGTCCATATACAGCCAGGGGATTGACATGTCCCAGGAGGATGTACATGCATCACAACCTGCTCACACATCAAACAGTAGGGCCAGATCGAGCAGATTGAAGAGAAAGAGGGGAAGCCAGCAGAAGGGTGAGATTAAAGTCATACATATGGCCCTCAAGTGTATGAATGACCAACTCAAGAAGATTGTCGAGTGGCATGCACGCGCCCTTGCCAATAACACCCACGTGCACCAGGAATTCATACGCCTATTGCGTGAGATGTCGGAACTAAGCAATTTGGATAGGGCATTGTGCCAAAGGCATCTGATGTCTCATATGGACGACATGTGGGGTTTTGTACAAATGACTAACGATGAGAGGCAGAACTTTTGTAGAGTCCTCCTACGAGACTTCTCTAGATAG
Coding sequence (CDS)
ATGTCGGATGGGAACGAAGAGTTTTCGTCCATATACAGCCAGGGGATTGACATGTCCCAGGAGGATGTACATGCATCACAACCTGCTCACACATCAAACAGTAGGGCCAGATCGAGCAGATTGAAGAGAAAGAGGGGAAGCCAGCAGAAGGGTGAGATTAAAGTCATACATATGGCCCTCAAGTGTATGAATGACCAACTCAAGAAGATTGTCGAGTGGCATGCACGCGCCCTTGCCAATAACACCCACGTGCACCAGGAATTCATACGCCTATTGCGTGAGATGTCGGAACTAAGCAATTTGGATAGGGCATTGTGCCAAAGGCATCTGATGTCTCATATGGACGACATGTGGGGTTTTGTACAAATGACTAACGATGAGAGGCAGAACTTTTGTAGAGTCCTCCTACGAGACTTCTCTAGATAG
Protein sequence
MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMALKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGFVQMTNDERQNFCRVLLRDFSR
Homology
BLAST of MELO3C012981 vs. NCBI nr
Match:
KAA0050806.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 280.8 bits (717), Expect = 6.5e-72
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query: 1 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL
Sbjct: 54 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 113
Query: 61 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF
Sbjct: 114 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 173
Query: 121 VQMTNDERQNFCRVLLRDFSR 142
VQMTNDERQNFCRVLLRDFSR
Sbjct: 174 VQMTNDERQNFCRVLLRDFSR 194
BLAST of MELO3C012981 vs. NCBI nr
Match:
KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 202.2 bits (513), Expect = 2.9e-48
Identity = 103/141 (73.05%), Postives = 117/141 (82.98%), Query Frame = 0
Query: 1 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
M DGNEEF S+YSQGIDMSQEDV AS+P+HTS R RSS KRKR SQQKGEI+VIHMA+
Sbjct: 79 MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 138
Query: 61 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
+C NDQL+ I EW ARALAN+THV QE +RLL M EL++LDR LCQRHL+S MDDM GF
Sbjct: 139 ECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRGF 198
Query: 121 VQMTNDERQNFCRVLLRDFSR 142
+QM +DERQNFCRVLL D SR
Sbjct: 199 IQMIDDERQNFCRVLLGDISR 219
BLAST of MELO3C012981 vs. NCBI nr
Match:
KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 179.1 bits (453), Expect = 2.7e-41
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0
Query: 1 MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 60
MSDGN+ EF +YSQGID+SQ+DV SQPA TS+ R RSS KRKRGSQ++GE+ VI+MA
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290
Query: 61 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 120
LKCMNDQL+ I+EW R AN T V QEF+RLL EM +LS+LDR LCQR LM +DDM
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350
Query: 121 FVQMTNDERQNFCRVLLRDFSR 142
FV+MT++ER+NFCRV LRD SR
Sbjct: 351 FVEMTDEERKNFCRVFLRDVSR 372
BLAST of MELO3C012981 vs. NCBI nr
Match:
KAA0060654.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 176.0 bits (445), Expect = 2.3e-40
Identity = 92/141 (65.25%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 1 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
M + NEEF S+YSQGID+SQEDV AS+ + S R SS+ KRKRGSQ++ EIKVIHM L
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276
Query: 61 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
+C NDQLK I EW A LAN+ HVHQEF +L EM EL+ LDR+L QRHL+SHM DM GF
Sbjct: 277 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336
Query: 121 VQMTNDERQNFCRVLLRDFSR 142
QM NDER +FCRV+LRD SR
Sbjct: 337 KQMPNDERASFCRVILRDISR 357
BLAST of MELO3C012981 vs. NCBI nr
Match:
KAA0035563.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 173.3 bits (438), Expect = 1.5e-39
Identity = 87/141 (61.70%), Postives = 109/141 (77.30%), Query Frame = 0
Query: 1 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
M DGNE+FSS+YSQG+D+SQ+DV AS+P+ S R RSS KRKRGSQ+ +++ IH+AL
Sbjct: 136 MGDGNEDFSSVYSQGVDISQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFDVEAIHLAL 195
Query: 61 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
N+QL++I EW AR LAN+ HV EF R+LREM EL++LDRAL QRHL+S MDD+ GF
Sbjct: 196 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 255
Query: 121 VQMTNDERQNFCRVLLRDFSR 142
V M DER+ FCRVLLRD R
Sbjct: 256 VLMPEDEREGFCRVLLRDIER 276
BLAST of MELO3C012981 vs. ExPASy TrEMBL
Match:
A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)
HSP 1 Score: 280.8 bits (717), Expect = 3.1e-72
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0
Query: 1 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL
Sbjct: 54 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 113
Query: 61 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF
Sbjct: 114 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 173
Query: 121 VQMTNDERQNFCRVLLRDFSR 142
VQMTNDERQNFCRVLLRDFSR
Sbjct: 174 VQMTNDERQNFCRVLLRDFSR 194
BLAST of MELO3C012981 vs. ExPASy TrEMBL
Match:
A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)
HSP 1 Score: 202.2 bits (513), Expect = 1.4e-48
Identity = 103/141 (73.05%), Postives = 117/141 (82.98%), Query Frame = 0
Query: 1 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
M DGNEEF S+YSQGIDMSQEDV AS+P+HTS R RSS KRKR SQQKGEI+VIHMA+
Sbjct: 79 MLDGNEEFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMAI 138
Query: 61 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
+C NDQL+ I EW ARALAN+THV QE +RLL M EL++LDR LCQRHL+S MDDM GF
Sbjct: 139 ECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRGF 198
Query: 121 VQMTNDERQNFCRVLLRDFSR 142
+QM +DERQNFCRVLL D SR
Sbjct: 199 IQMIDDERQNFCRVLLGDISR 219
BLAST of MELO3C012981 vs. ExPASy TrEMBL
Match:
A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)
HSP 1 Score: 179.1 bits (453), Expect = 1.3e-41
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0
Query: 1 MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 60
MSDGN+ EF +YSQGID+SQ+DV SQPA TS+ R RSS KRKRGSQ++GE+ VI+MA
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290
Query: 61 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 120
LKCMNDQL+ I+EW R AN T V QEF+RLL EM +LS+LDR LCQR LM +DDM
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350
Query: 121 FVQMTNDERQNFCRVLLRDFSR 142
FV+MT++ER+NFCRV LRD SR
Sbjct: 351 FVEMTDEERKNFCRVFLRDVSR 372
BLAST of MELO3C012981 vs. ExPASy TrEMBL
Match:
A0A5A7V026 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00100 PE=3 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 92/141 (65.25%), Postives = 108/141 (76.60%), Query Frame = 0
Query: 1 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
M + NEEF S+YSQGID+SQEDV AS+ + S R SS+ KRKRGSQ++ EIKVIHM L
Sbjct: 217 MPNRNEEFPSVYSQGIDISQEDVRASRSSCVSEGRVESSKSKRKRGSQREVEIKVIHMVL 276
Query: 61 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
+C NDQLK I EW A LAN+ HVHQEF +L EM EL+ LDR+L QRHL+SHM DM GF
Sbjct: 277 ECTNDQLKMITEWPACPLANDNHVHQEFFLILHEMPELTILDRSLLQRHLLSHMGDMRGF 336
Query: 121 VQMTNDERQNFCRVLLRDFSR 142
QM NDER +FCRV+LRD SR
Sbjct: 337 KQMPNDERASFCRVILRDISR 357
BLAST of MELO3C012981 vs. ExPASy TrEMBL
Match:
A0A5D3E5U2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001980 PE=4 SV=1)
HSP 1 Score: 173.3 bits (438), Expect = 7.1e-40
Identity = 87/141 (61.70%), Postives = 109/141 (77.30%), Query Frame = 0
Query: 1 MSDGNEEFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMAL 60
M DGNE+FSS+YSQG+D+SQ+DV AS+P+ S R RSS KRKRGSQ+ +++ IH+AL
Sbjct: 57 MGDGNEDFSSVYSQGVDISQDDVRASRPSRASEGRTRSSGSKRKRGSQRDFDVEAIHLAL 116
Query: 61 KCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWGF 120
N+QL++I EW AR LAN+ HV EF R+LREM EL++LDRAL QRHL+S MDD+ GF
Sbjct: 117 DQTNEQLRQIAEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGF 176
Query: 121 VQMTNDERQNFCRVLLRDFSR 142
V M DER+ FCRVLLRD R
Sbjct: 177 VLMPEDEREGFCRVLLRDIER 197
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0050806.1 | 6.5e-72 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] >TYK08539.1 retrotransposon p... | [more] |
KAA0050190.1 | 2.9e-48 | 73.05 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... | [more] |
KAA0033884.1 | 2.7e-41 | 66.20 | retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... | [more] |
KAA0060654.1 | 2.3e-40 | 65.25 | retrotransposon protein [Cucumis melo var. makuwa] >TYK02221.1 retrotransposon p... | [more] |
KAA0035563.1 | 1.5e-39 | 61.70 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U9D5 | 3.1e-72 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U4I8 | 1.4e-48 | 73.05 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BQI7 | 1.3e-41 | 66.20 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7V026 | 1.1e-40 | 65.25 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3E5U2 | 7.1e-40 | 61.70 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |