MELO3C012892 (gene) Melon (DHL92) v4

Overview


Name	MELO3C012892
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DUF4283 domain-containing protein
Location	chr04: 13880562 .. 13881292 (-)
RNA-Seq Expression	MELO3C012892
Synteny	MELO3C012892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACCTTTCTTCAAATAGGAAATGCATGCGGGGGTCTGCAGGAAGTCGACAAAACAATGATGAACATGGACAACCTCCTTGAGGCAAAGATTAAGGTTAGATACAACTATAATGGATTCATCCCAACTGCCATTAGAATCAAAGACAAAGATGGTCATTTTTTTGTGGTAAACACTAGGGGTGAGCATGGTAGGTCGAAAAACCGAAACGAACGACCGAAACCGAACAAATCGACGTCGATCAGGCAAAAAAGCAATGCAGGTCGGTCGGATTCGGTTTATTAAAATTTGTGAACTGGGTTTTTCGGCCGGTTTAAAGCTTAGGGTCGGTTGGTTTACCAAACTGACCAAACCGACCCTTTTTTTTAAAAAAAAATTATATATATATTATTTTATAAAATTAGGTTATTTTTTTCTCTCCCTCGCCAGTCGTCGCCTCCCTCCCTCACGCTCGCCAAATCGCCATCACCATCTCCCTCACGCTTTCGCCGGTGAAAAGTTCGTCATCTCCTTCACAATATCCTACCGTTCGTCATTTCACTGCCGGCCGTTCCAAGTTGCAGGTTTCGTTCGTCATTCCGTCGTCGGTTGTCCCTCAAAATCATCCCGCCGTTCGTCATCTCCCTCACAGTCATCTCCAATCGCAAGTTACAGTCGGTCGTTCATCATCTGCCGTCGATCGTTCATCATCTCCAATCGCAAGTTGCCCTCTTCGCCGCTGTTGGTAA

mRNA sequence

ATGGACACCTTTCTTCAAATAGGAAATGCATGCGGGGGTCTGCAGGAAGTCGACAAAACAATGATGAACATGGACAACCTCCTTGAGGCAAAGATTAAGGTTAGATACAACTATAATGGATTCATCCCAACTGCCATTAGAATCAAAGACAAAGATGGTCATTTTTTTGTGGTAAACACTAGGGGTGAGCATGGTAGGTCGAAAAACCGAAACGAACGACCGAAACCGAACAAATCGACGTCGATCAGGCAAAAAAGCAATGCAGTCGTCGCCTCCCTCCCTCACGCTCGCCAAATCGCCATCACCATCTCCCTCACGCTTTCGCCGGTGAAAAGTTCGTCATCTCCTTCACAATATCCTACCGTTCGTCATTTCACTGCCGGCCGTTCCAAGTTGCAGGTTTCGTTCGTCATTCCGTCGTCGGTTGTCCCTCAAAATCATCCCGCCGTTCGTCATCTCCCTCACAGTCATCTCCAATCGCAAGTTACAGTCGGTCGTTCATCATCTGCCGTCGATCGTTCATCATCTCCAATCGCAAGTTGCCCTCTTCGCCGCTGTTGGTAA

Coding sequence (CDS)

ATGGACACCTTTCTTCAAATAGGAAATGCATGCGGGGGTCTGCAGGAAGTCGACAAAACAATGATGAACATGGACAACCTCCTTGAGGCAAAGATTAAGGTTAGATACAACTATAATGGATTCATCCCAACTGCCATTAGAATCAAAGACAAAGATGGTCATTTTTTTGTGGTAAACACTAGGGGTGAGCATGGTAGGTCGAAAAACCGAAACGAACGACCGAAACCGAACAAATCGACGTCGATCAGGCAAAAAAGCAATGCAGTCGTCGCCTCCCTCCCTCACGCTCGCCAAATCGCCATCACCATCTCCCTCACGCTTTCGCCGGTGAAAAGTTCGTCATCTCCTTCACAATATCCTACCGTTCGTCATTTCACTGCCGGCCGTTCCAAGTTGCAGGTTTCGTTCGTCATTCCGTCGTCGGTTGTCCCTCAAAATCATCCCGCCGTTCGTCATCTCCCTCACAGTCATCTCCAATCGCAAGTTACAGTCGGTCGTTCATCATCTGCCGTCGATCGTTCATCATCTCCAATCGCAAGTTGCCCTCTTCGCCGCTGTTGGTAA

Protein sequence

MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNTRGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPVKSSSSPSQYPTVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRSSSAVDRSSSPIASCPLRRCW

Homology

[Close]

BLAST of MELO3C012892 vs. NCBI nr
Match: KAA0038069.1 (putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK20536.1 putative amidohydrolase ytcJ [Cucumis melo var. makuwa])

HSP 1 Score: 369.8 bits (948), Expect = 1.4e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNT 60
           MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNT
Sbjct: 83  MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNT 142

Query: 61  RGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPVKSSSSPSQYP 120
           RGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPVKSSSSPSQYP
Sbjct: 143 RGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPVKSSSSPSQYP 202

Query: 121 TVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRSSSAVDRSSSPIAS 180
           TVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRSSSAVDRSSSPIAS
Sbjct: 203 TVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRSSSAVDRSSSPIAS 262

Query: 181 CPLRRCW 188
           CPLRRCW
Sbjct: 263 CPLRRCW 269

[Close]

BLAST of MELO3C012892 vs. NCBI nr
Match: TYK04573.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-26
Identity = 85/191 (44.50%), Postives = 109/191 (57.07%), Query Frame = 0


Query: 3   TFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKD--------GH 62
           +F+   + CG +  +     + +   E K ++  N        I+ K  +          
Sbjct: 14  SFIDDYSRCGNVYLIQNKSDSFEKFKEYKAELEMNQYASAERCIKKKKLNFVRRGLLYDE 73

Query: 63  FFVVNTRGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPV---- 122
           F  V +RGEHGRSKNRNERPKPN++ S+ +K   + +S P    + +T S + SP+    
Sbjct: 74  FCSVISRGEHGRSKNRNERPKPNETMSVGRK--RMQSSPP---SLTLTKSPSPSPILPHG 133

Query: 123 ---KSSSSPSQYPTVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRS 179
               SSSSP QYP VR+  AGRSKLQ  FVIPSSVVP NHP VRHL HSHLQSQ  VGR 
Sbjct: 134 FATASSSSPLQYPAVRYSVAGRSKLQFLFVIPSSVVPDNHPVVRHLSHSHLQSQDVVGRL 193

[Close]

BLAST of MELO3C012892 vs. NCBI nr
Match: KAA0051986.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-26
Identity = 85/191 (44.50%), Postives = 109/191 (57.07%), Query Frame = 0


Query: 3   TFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKD--------GH 62
           +F+   + CG +  +     + +   E K ++  N        I+ K  +          
Sbjct: 14  SFIDDYSRCGNVYLIQNKSDSFEKFKEYKAELEMNQYASAERCIKKKKLNFVRRGLLYDE 73

Query: 63  FFVVNTRGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPV---- 122
           F  V +RGEHGRSKNRNERPKPN++ S+ +K   + +S P    + +T S + SP+    
Sbjct: 74  FCSVISRGEHGRSKNRNERPKPNETMSVGRK--RMQSSPP---SLTLTKSPSPSPILPHG 133

Query: 123 ---KSSSSPSQYPTVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRS 179
               SSSSP QYP VR+  AGRSKLQ  FVIPSSVVP NHP VRHL HSHLQSQ  VGR 
Sbjct: 134 FATASSSSPLQYPAVRYSVAGRSKLQFLFVIPSSVVPDNHPVVRHLSHSHLQSQDVVGRL 193

[Close]

BLAST of MELO3C012892 vs. NCBI nr
Match: KAA0042163.1 (INO80 complex subunit D-like isoform X1 [Cucumis melo var. makuwa] >TYK26738.1 INO80 complex subunit D-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 5.7e-23
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 99  IAITISLTLSPVKSSSSPSQYPTVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHL 158
           +AI ISLTL P+ SSSS SQYP VRH  AG SKLQ+ FVIP S +P NHPA+RHLPHSHL
Sbjct: 232 LAIAISLTLLPLASSSSSSQYPAVRHSAAGHSKLQLPFVIPRSAIPHNHPAIRHLPHSHL 291

Query: 159 QSQVTVGRSSSAVDRSSSPIASCPLRR 186
           Q QV +G SS  V+RSSSPI SC LRR
Sbjct: 292 QLQVVIGCSSFFVERSSSPIESCLLRR 318

[Close]

BLAST of MELO3C012892 vs. NCBI nr
Match: KAA0055987.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 6.1e-17
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNT 60
           MDTFLQIGNAC G  EVDK  MNM+NLLEAKIKVRYNY GFIP  IRIKDK+GH FVV++
Sbjct: 203 MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHS 262

[Close]

BLAST of MELO3C012892 vs. ExPASy TrEMBL
Match: A0A5A7T9Q4 (Putative amidohydrolase ytcJ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G001200 PE=4 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 6.8e-99
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNT 60
           MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNT
Sbjct: 83  MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNT 142

Query: 61  RGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPVKSSSSPSQYP 120
           RGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPVKSSSSPSQYP
Sbjct: 143 RGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPVKSSSSPSQYP 202

Query: 121 TVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRSSSAVDRSSSPIAS 180
           TVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRSSSAVDRSSSPIAS
Sbjct: 203 TVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRSSSAVDRSSSPIAS 262

Query: 181 CPLRRCW 188
           CPLRRCW
Sbjct: 263 CPLRRCW 269

[Close]

BLAST of MELO3C012892 vs. ExPASy TrEMBL
Match: A0A5A7UCQ7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004700 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 85/191 (44.50%), Postives = 109/191 (57.07%), Query Frame = 0


Query: 3   TFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKD--------GH 62
           +F+   + CG +  +     + +   E K ++  N        I+ K  +          
Sbjct: 14  SFIDDYSRCGNVYLIQNKSDSFEKFKEYKAELEMNQYASAERCIKKKKLNFVRRGLLYDE 73

Query: 63  FFVVNTRGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPV---- 122
           F  V +RGEHGRSKNRNERPKPN++ S+ +K   + +S P    + +T S + SP+    
Sbjct: 74  FCSVISRGEHGRSKNRNERPKPNETMSVGRK--RMQSSPP---SLTLTKSPSPSPILPHG 133

Query: 123 ---KSSSSPSQYPTVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRS 179
               SSSSP QYP VR+  AGRSKLQ  FVIPSSVVP NHP VRHL HSHLQSQ  VGR 
Sbjct: 134 FATASSSSPLQYPAVRYSVAGRSKLQFLFVIPSSVVPDNHPVVRHLSHSHLQSQDVVGRL 193

[Close]

BLAST of MELO3C012892 vs. ExPASy TrEMBL
Match: A0A5D3BXV2 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002070 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-26
Identity = 85/191 (44.50%), Postives = 109/191 (57.07%), Query Frame = 0


Query: 3   TFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKD--------GH 62
           +F+   + CG +  +     + +   E K ++  N        I+ K  +          
Sbjct: 14  SFIDDYSRCGNVYLIQNKSDSFEKFKEYKAELEMNQYASAERCIKKKKLNFVRRGLLYDE 73

Query: 63  FFVVNTRGEHGRSKNRNERPKPNKSTSIRQKSNAVVASLPHARQIAITISLTLSPV---- 122
           F  V +RGEHGRSKNRNERPKPN++ S+ +K   + +S P    + +T S + SP+    
Sbjct: 74  FCSVISRGEHGRSKNRNERPKPNETMSVGRK--RMQSSPP---SLTLTKSPSPSPILPHG 133

Query: 123 ---KSSSSPSQYPTVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHLQSQVTVGRS 179
               SSSSP QYP VR+  AGRSKLQ  FVIPSSVVP NHP VRHL HSHLQSQ  VGR 
Sbjct: 134 FATASSSSPLQYPAVRYSVAGRSKLQFLFVIPSSVVPDNHPVVRHLSHSHLQSQDVVGRL 193

[Close]

BLAST of MELO3C012892 vs. ExPASy TrEMBL
Match: A0A5D3DT82 (KAT8 regulatory NSL complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00240 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23
Identity = 61/87 (70.11%), Postives = 68/87 (78.16%), Query Frame = 0


Query: 99  IAITISLTLSPVKSSSSPSQYPTVRHFTAGRSKLQVSFVIPSSVVPQNHPAVRHLPHSHL 158
           +AI ISLTL P+ SSSS SQYP VRH  AG SKLQ+ FVIP S +P NHPA+RHLPHSHL
Sbjct: 232 LAIAISLTLLPLASSSSSSQYPAVRHSAAGHSKLQLPFVIPRSAIPHNHPAIRHLPHSHL 291

Query: 159 QSQVTVGRSSSAVDRSSSPIASCPLRR 186
           Q QV +G SS  V+RSSSPI SC LRR
Sbjct: 292 QLQVVIGCSSFFVERSSSPIESCLLRR 318

[Close]

BLAST of MELO3C012892 vs. ExPASy TrEMBL
Match: A0A5D3DW73 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00070 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.9e-17
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0


Query: 1   MDTFLQIGNACGGLQEVDKTMMNMDNLLEAKIKVRYNYNGFIPTAIRIKDKDGHFFVVNT 60
           MDTFLQIGNAC G  EVDK  MNM+NLLEAKIKVRYNY GFIP  IRIKDK+GH FVV++
Sbjct: 203 MDTFLQIGNACRGSFEVDKATMNMENLLEAKIKVRYNYCGFIPATIRIKDKNGHSFVVHS 262

The following BLAST results are available for this feature:

BLAST of MELO3C012892 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038069.1	1.4e-98	100.00	putative amidohydrolase ytcJ [Cucumis melo var. makuwa] >TYK20536.1 putative ami...	[more]
TYK04573.1	4.2e-26	44.50	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0051986.1	4.2e-26	44.50	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0042163.1	5.7e-23	70.11	INO80 complex subunit D-like isoform X1 [Cucumis melo var. makuwa] >TYK26738.1 I...	[more]
KAA0055987.1	6.1e-17	78.33	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C012892 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C012892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9Q4	6.8e-99	100.00	Putative amidohydrolase ytcJ OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UCQ7	2.0e-26	44.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00470...	[more]
A0A5D3BXV2	2.0e-26	44.50	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5D3DT82	2.7e-23	70.11	KAT8 regulatory NSL complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3DW73	2.9e-17	78.33	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of MELO3C012892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012892.1	MELO3C012892.1	mRNA