MELO3C011656 (gene) Melon (DHL92) v4

Overview


Name	MELO3C011656
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ribosomal L18p/L5e family protein
Location	chr03: 11065791 .. 11066616 (-)
RNA-Seq Expression	MELO3C011656
Synteny	MELO3C011656

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTTCAATGGGAGAAGATAATAGAAGGCGATTTTGAAGCCCTAATAAATACGCCCAGTTCCTCATCATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGATTCCAAAGTCGCCTCTCGCGTCGGCATAAAGCTTGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAACTCTCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCATCGCCGTTGATGGGGTTGAGAAGCTTGGAAAAGGTTCGATCTAGCCTCGACTCTTATTTTTTCCGATCGGAGCTTGTACGTTTCGCGATTGAGATTGAATTTAGGGCACATATAATTGCTTATCCTCCATGTCGATTTATCATACCAATTTTGACTCATTTTCGATCTTTCTTTTGGATTCAAATTGTAATAATATAAATTGTTTTCATAATTAGTGAAAGAAATAGAGAAGAGACCAATTTCCCCTTTGGAATTTTGGCCATTTTGTCCTTGGCAGTGTTGAACTGCCTACAGATTATACTTGGCTGAAAAAAAAGGTAGCTATTGTAATTAGACAATATTTTTTTAAATAACTCCTAACGTCGATGAATGTATCAAAACAAAACATTGAAGTTTAATTTGATTCAATTATTAATTTGGG

mRNA sequence

AAAGTTCAATGGGAGAAGATAATAGAAGGCGATTTTGAAGCCCTAATAAATACGCCCAGTTCCTCATCATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGATTCCAAAGTCGCCTCTCGCGTCGGCATAAAGCTTGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAACTCTCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCATCGCCGTTGATGGGGTTGAGAAGCTTGGAAAAGGTTCGATCTAGCCTCGACTCTTATTTTTTCCGATCGGAGCTTGTACGTTTCGCGATTGAGATTGAATTTAGGGCACATATAATTGCTTATCCTCCATGTCGATTTATCATACCAATTTTGACTCATTTTCGATCTTTCTTTTGGATTCAAATTGTAATAATATAAATTGTTTTCATAATTAGTGAAAGAAATAGAGAAGAGACCAATTTCCCCTTTGGAATTTTGGCCATTTTGTCCTTGGCAGTGTTGAACTGCCTACAGATTATACTTGGCTGAAAAAAAAGGTAGCTATTGTAATTAGACAATATTTTTTTAAATAACTCCTAACGTCGATGAATGTATCAAAACAAAACATTGAAGTTTAATTTGATTCAATTATTAATTTGGG

Coding sequence (CDS)

ATGTCCATTAACCAAAACCACCTCCTCCGCCTTGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTCACCAATCCAGCCACCTCCTCCATCATCGCCATGGCTTCTTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAATTTCTGGGATTCCAAAGTCGCCTCTCGCGTCGGCATAAAGCTTGGCCACCGTTTGAAGGAGATCGGCGTCTCCGATGTTCGGATTGATCTCGCTGAAGAACTCTCCCGCCCTATTTACTACCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCATCGCCGTTGATGGGGTTGAGAAGCTTGGAAAAGGTTCGATCTAG

Protein sequence

MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEKLGKGSI

Homology

[Close]

BLAST of MELO3C011656 vs. NCBI nr
Match: XP_016900104.1 (PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo] >KAA0033043.1 hypothetical protein E6C27_scaffold269G001480 [Cucumis melo var. makuwa] >TYK03458.1 hypothetical protein E5676_scaffold121G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGKGSI 127
           LGKGSI
Sbjct: 121 LGKGSI 126

[Close]

BLAST of MELO3C011656 vs. NCBI nr
Match: XP_004140885.1 (uncharacterized protein LOC101204363 [Cucumis sativus])

HSP 1 Score: 238.8 bits (608), Expect = 2.5e-59
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGKGSI 127
           LG GSI
Sbjct: 121 LGTGSI 126

[Close]

BLAST of MELO3C011656 vs. NCBI nr
Match: KAE8646622.1 (hypothetical protein Csa_005380 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 8.1e-58
Identity = 119/122 (97.54%), Postives = 120/122 (98.36%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LG 123
           LG
Sbjct: 121 LG 122

[Close]

BLAST of MELO3C011656 vs. NCBI nr
Match: XP_038884098.1 (uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida])

HSP 1 Score: 231.5 bits (589), Expect = 4.0e-57
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGKGS 126
           LG G+
Sbjct: 121 LGTGN 125

[Close]

BLAST of MELO3C011656 vs. NCBI nr
Match: XP_038884099.1 (uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida])

HSP 1 Score: 231.5 bits (589), Expect = 4.0e-57
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSI+QNHLLRLVLSCRKITAQVTNPATSSI+AMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSISQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEE SRP+YYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEEFSRPLYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGKGS 126
           LG G+
Sbjct: 121 LGTGN 125

[Close]

BLAST of MELO3C011656 vs. ExPASy TrEMBL
Match: A0A5D3BWW4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00630 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGKGSI 127
           LGKGSI
Sbjct: 121 LGKGSI 126

[Close]

BLAST of MELO3C011656 vs. ExPASy TrEMBL
Match: A0A1S4DVU4 (uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK
Sbjct: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120

Query: 121 LGKGSI 127
           LGKGSI
Sbjct: 121 LGKGSI 126

[Close]

BLAST of MELO3C011656 vs. ExPASy TrEMBL
Match: A0A0A0KE39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.2e-59
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SKVASRVG KLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSG+AVDG EK
Sbjct: 61  SKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGVAVDGAEK 120

Query: 121 LGKGSI 127
           LG GSI
Sbjct: 121 LGTGSI 126

[Close]

BLAST of MELO3C011656 vs. ExPASy TrEMBL
Match: A0A6J1JZ79 (uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.1e-55
Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAYY SKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYYHSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+YYR  VLPLFDSV+RSG+AV+G EK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGKGSI 127
           LG G+I
Sbjct: 121 LGSGAI 126

[Close]

BLAST of MELO3C011656 vs. ExPASy TrEMBL
Match: A0A6J1EVG7 (uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC111436340 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.0e-53
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 0


Query: 1   MSINQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWD 60
           MSINQNHLLRLVLSCRKITAQVTNP TS+IIAMASSSEQEFVAY RSKLHRFPRSNNFWD
Sbjct: 1   MSINQNHLLRLVLSCRKITAQVTNPDTSTIIAMASSSEQEFVAYNRSKLHRFPRSNNFWD 60

Query: 61  SKVASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEK 120
           SK+ASRVG KLGHRLKEIGVSDVRIDLAEELSRP+ YR  VLPLFDSV+RSG+AV+G EK
Sbjct: 61  SKIASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVSYRNRVLPLFDSVRRSGVAVNGAEK 120

Query: 121 LGKGSI 127
           LG G+I
Sbjct: 121 LGSGAI 126

[Close]

BLAST of MELO3C011656 vs. TAIR 10
Match: AT2G43310.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 164.9 bits (416), Expect = 4.3e-41
Identity = 84/123 (68.29%), Postives = 103/123 (83.74%), Query Frame = 0


Query: 4   NQNHLLRLVLSCRKITAQVTNPATSSIIAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKV 63
           +++HLL+LVLSCRKITAQVT P +S+IIAMASSSEQEF+A  R+ L+RFP SN+FWDSK 
Sbjct: 5   HRHHLLQLVLSCRKITAQVTQPGSSTIIAMASSSEQEFLAKSRANLYRFPHSNHFWDSKT 64

Query: 64  ASRVGIKLGHRLKEIGVSDVRIDLAEELSRPIYYRKMVLPLFDSVQRSGIAVDGVEKLGK 123
           ASRVG KLG RL+E+GV  V ID  EE+SRPI++RK VLPLFDSV+R+GI VDG E+L  
Sbjct: 65  ASRVGEKLGLRLRELGVDVVSIDADEEISRPIHHRKRVLPLFDSVRRTGIRVDGTEQLND 124

Query: 124 GSI 127
            S+
Sbjct: 125 ISV 127

The following BLAST results are available for this feature:

BLAST of MELO3C011656 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900104.1	2.1e-61	100.00	PREDICTED: uncharacterized protein LOC103488672 [Cucumis melo] >KAA0033043.1 hyp...	[more]
XP_004140885.1	2.5e-59	96.83	uncharacterized protein LOC101204363 [Cucumis sativus]	[more]
KAE8646622.1	8.1e-58	97.54	hypothetical protein Csa_005380 [Cucumis sativus]	[more]
XP_038884098.1	4.0e-57	92.80	uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]	[more]
XP_038884099.1	4.0e-57	92.80	uncharacterized protein LOC120075027 isoform X6 [Benincasa hispida]	[more]

BLAST of MELO3C011656 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C011656 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWW4	1.0e-61	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DVU4	1.0e-61	100.00	uncharacterized protein LOC103488672 OS=Cucumis melo OX=3656 GN=LOC103488672 PE=...	[more]
A0A0A0KE39	1.2e-59	96.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G042360 PE=4 SV=1	[more]
A0A6J1JZ79	3.1e-55	88.89	uncharacterized protein LOC111488745 OS=Cucurbita maxima OX=3661 GN=LOC111488745...	[more]
A0A6J1EVG7	1.0e-53	88.10	uncharacterized protein LOC111436340 OS=Cucurbita moschata OX=3662 GN=LOC1114363...	[more]

BLAST of MELO3C011656 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43310.1	4.3e-41	68.29	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 3..114 e-value: 7.7E-8 score: 34.9
None	No IPR available	PANTHER	PTHR12899:SF14	F14B2.25/F14B2.25	coord: 4..123
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 5..89
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 4..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011656.1	MELO3C011656.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome