MELO3C009479 (gene) Melon (DHL92) v4

Overview


Name	MELO3C009479
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	replication protein A 14 kDa subunit B
Location	chr04: 30619784 .. 30622923 (+)
RNA-Seq Expression	MELO3C009479
Synteny	MELO3C009479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGGTATTGTAGTTCCTCAGTGCTCTTTTGATTCTTTGTTCGAGTGTTTTGCAATTATTCTCCCCCTTGTTTGGTTCAGTTTGTTAGATCGAAGTGCACGATGAAATTCTTTTTGACTCTTTTCTTGTATCGTCTTGTCAGGAATATGGATATGTTTGTTTGGCGTCAAATTAAGTCTAGTTGTTTTCTAGTTTGGTCGCATTTTCTTCCTGATTATGGTCTGGGTTCCTCATTTTGACATTTAAAGAAAGTAGAGAATTTAGACGCTGGAAGACAGTTGTGAGTGGAGAATTTTAACATTAGTGAAGCTAAAATAAGAGCTAACCCACAGTGATCATCATTCATACTCGTATTGTTATAATTAATTTTTCTTTCAAATGCAAAGAGCTTAGAGAGAATGGAACCACCTACTTAGGATTTAAATTTTAACAAGTTATCTTGACAATCAAATGCGTTAAAATCACATGTTTCTTTTGTTAGAACAGTTGAGTGCAACAAAGTGGGATGAACACTCTGTGAAAATTTCTCTGACTGATATCTTATAGACATTTTTTAAACATAGCAATTGGTTTTGAGTACAAATGTCAAAAGTAACTGTTTGGATCTCCACCACATTAGATTTTTGTAACGAGGAAGAAAATTACTTGTGAAATGCTGTCTGCTAGTTGCATAAATGCCACCATGAATTTTTTTTATTGATTTGGTGTTTAACCCAACAAATTTCAAGCATTGCTAACATGGTGGAACAAGTTTGTTTTGTTCTCACTAGATGTTCCTCTCTGAAATATTTTCTTCTTGTTCTTGCTGTTTACTATAGATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGGTATGCTCTCTTCTTCAATCATGCTTACGCTAAAATGACATTTGGTATTCTTACGCAAAAATGACGGTAGAAATAGTTGGCTTGGGTCATGCTGAAAGCCCAAGGAATTTATTTTCCCCTAATTTTATTCTTTTGATGAGGCTATTTTCCCCTAATTTTATTCTTTTAATGAGGCTTGTGGTGTCTATAAATACTTCCCCTTTGTACCTTTATAATTTCAGAAATAATAAGAAACATCTATACCATGGTTTTTCTCCCTGTACTAGGGTTTTCACATAGACCTCGTATTCTTTCTTTCTCTTTACTTTCAATAATGACACTTTGAAGCTCAGAAACTGTATAGTGCCAATATTTATGTTTGAATTAGCTGAAGAGGATCACTAATTGTGTTTTCAGCTGTATCAATGTTCTTGGCGAAAGCAATGTTGAGTTTTAAATAGATATTTTCTCAAAAAGCCTAGCTAAATCTGGCATGTGCAATTCTGAAGCGTAACTTGGCTAGATCATCAGTTTGGAACCGGGATCAAACTAGTTGAAACTAGTATTTGACATTCATTTTGTATCTAGTTGAAACTAGCATTTGACATTCATTTTGTATCTAGTTGAAACTAAATCCATTCTCTTTTTAAAACCTTCTGCTTACCTTGTATGAATGTGAAATTACCGAACTGGAACATTGTGCACTTGAGTTGGATCTATCACACTTCTCTTGGTCCTTAGGTTTTAGGTCTTCCCACTCTCCTGGCGCTCTCTATTTTCTCTTGCTCTTGTACTCACTCCTTTTTTTTATAATTAAAAGGGAGTGAATATAACAAGACTGCGAGAGTCAACATTAGGAATTGAAATTGAGGATGTATAGTTCCAAGAGCGAGAGTTGCCCAATACAAAAGCACAATAAGGTCATTTCAACAATTTTCTGACGACGATGCAAACAAAATGTCAAAAAACTTTTTATAAAGTGGAGCTGTTTCTAGTATTGACCCAAAATTTGGTTCAACCATACAATTATCAGCAGTCACCAAGTTCTATAAATGTAGAAATAAGAGAAAAAAACTATACCAAATGATGAACTTGGCGAGTGAAAAACCAGTTATATGTGGGTGTGAGTGCGTTTCATTTTGTGAGCCCTTGGGATAATTCTGTTAGTTGGGAAAGGGGCGTTGAATAGGCTGAGGTAGGGAGTCTTTCGTTATCTTTTGGCATATTTTTTTTGTAGATCTTTTCAGCATAAAGGAGAAGGGGGAGATTTCGAACTCCCTCCATATTTGCCAAAACAGGGAATCTATAATTCATATCTCTCAAATCCATCTTACTTAGCTCATTAAGACTTAAGAATTTGTTACCCCACGATGTTTTATATAATCTTCTCCTTGGATGAGGAGCCTGAAGATGAGATATGCCAATAATTCAAGCACGAGTTACTTATAGAATAATCACTCTTGGATTATTCTTTCAACATTCTATGAGATTAGATTAGTTATTGAACTTTTACCAACTATTATGAGAACAACTAGCATTCTGAATTCTTTGTTTAACGCTGTTTGCAGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGATTTTCAAGCCAGACATTCTTTAGCAAGCTCCCGTGACACGCCAAGTCGCCAATGTTCTCTTCATGTTCTTCTGAAAGCATCCGAGATTTATCGTTCATACGGTATTGAACTTTTCAGGTAAGGGATGTATAAAATTTGAATATGCAAAGTATGTTTGTGTTAGAATATACTAGAATGAACATTGCTTCAAAATGATAAAAAGAATTATATTTTAATCAATTTCGTTTGTAGTTTTTTAGGTTAGTAAGCCTTTGTGAATGCAAATAAACTGAAAACCGATGATTACAAACTGACGAACTATAATCTTTAACTGAAGCTCAATGTTATGAAAAACATAATCTAGAGAATA

mRNA sequence

TCTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGATTTTCAAGCCAGACATTCTTTAGCAAGCTCCCGTGACACGCCAAGTCGCCAATGTTCTCTTCATGTTCTTCTGAAAGCATCCGAGATTTATCGTTCATACGGTATTGAACTTTTCAGGTAAGGGATGTATAAAATTTGAATATGCAAAGTATGTTTGTGTTAGAATATACTAGAATGAACATTGCTTCAAAATGATAAAAAGAATTATATTTTAATCAATTTCGTTTGTAGTTTTTTAGGTTAGTAAGCCTTTGTGAATGCAAATAAACTGAAAACCGATGATTACAAACTGACGAACTATAATCTTTAACTGAAGCTCAATGTTATGAAAAACATAATCTAGAGAATA

Coding sequence (CDS)

CTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGA

Protein sequence

LISFLVEASILPLSKTARFFDRFDCHFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI

Homology

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BLAST of MELO3C009479 vs. NCBI nr
Match: XP_023528146.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 9.5e-55
Identity = 115/131 (87.79%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 15  KTARFF---DRFDCHFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNG 74
           K A FF    RFD HFRRT + LNQMDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNG
Sbjct: 29  KPALFFLRLSRFDFHFRRTPQFLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNG 88

Query: 75  VILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ 134
           VI GKSTDDNQITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ
Sbjct: 89  VIYGKSTDDNQITVKGSPPFTLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ 148

Query: 135 FANGEFKHLFI 143
            ANGEFK LF+
Sbjct: 149 LANGEFKPLFV 159

[Close]

BLAST of MELO3C009479 vs. NCBI nr
Match: KAG6580705.1 (ABC transporter B family member 29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 114/131 (87.02%), Postives = 117/131 (89.31%), Query Frame = 0


Query: 15  KTARFFDR---FDCHFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNG 74
           K A FF R   FD HFRRT + LNQMDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNG
Sbjct: 655 KPALFFLRLSWFDFHFRRTPQFLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNG 714

Query: 75  VILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ 134
           VI GKSTDD+QITVKGSPPF LSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ
Sbjct: 715 VIYGKSTDDSQITVKGSPPFSLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ 774

Query: 135 FANGEFKHLFI 143
            ANGEFK LF+
Sbjct: 775 LANGEFKPLFV 785

[Close]

BLAST of MELO3C009479 vs. NCBI nr
Match: XP_008442847.1 (PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 3.4e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 96
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60

Query: 97  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106

[Close]

BLAST of MELO3C009479 vs. NCBI nr
Match: XP_022144611.1 (replication protein A 14 kDa subunit B [Momordica charantia])

HSP 1 Score: 211.8 bits (538), Expect = 3.7e-51
Identity = 106/117 (90.60%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 26  HFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITV 85
           HF R+L+SLN+MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTDDNQI V
Sbjct: 49  HFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIV 108

Query: 86  KGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           KGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQ ANGEFK LFI
Sbjct: 109 KGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI 165

[Close]

BLAST of MELO3C009479 vs. NCBI nr
Match: XP_038905423.1 (replication protein A 14 kDa subunit B [Benincasa hispida])

HSP 1 Score: 211.5 bits (537), Expect = 4.9e-51
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 96
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVI GKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVIFGKSTDDNQITVKGSPPFPLSKF 60

Query: 97  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKHLFI 106

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BLAST of MELO3C009479 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 7.9e-36
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 96
           MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G ++GKSTDD QI VKGSP  PL+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 97  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+ ANGEF+HLFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of MELO3C009479 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.2e-33
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 96
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 97  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of MELO3C009479 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.7e-28
Identity = 55/106 (51.89%), Postives = 84/106 (79.25%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 96
           MDTS P+ FVN E+L+++VGRRVR V+Q   E  G+++G+STD +Q+T+KG+   P+S +
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 97  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           VE+IGIA+ +++IRA+V T+FG++FD + FN LC+ ANG+ K LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]

BLAST of MELO3C009479 vs. ExPASy TrEMBL
Match: A0A0A0LGP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777000 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 8.4e-65
Identity = 127/133 (95.49%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 10  ILPLSKTARFFDRFDCHFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEG 69
           ILPLSKTAR FDRFDCHFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE 
Sbjct: 13  ILPLSKTARSFDRFDCHFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSES 72

Query: 70  NGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQL 129
           NGV+ GKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQL
Sbjct: 73  NGVVFGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQL 132

Query: 130 CQFANGEFKHLFI 143
           C FANGEFK LFI
Sbjct: 133 CLFANGEFKPLFI 145

[Close]

BLAST of MELO3C009479 vs. ExPASy TrEMBL
Match: A0A1S3B7E2 (replication protein A 14 kDa subunit B OS=Cucumis melo OX=3656 GN=LOC103486618 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.6e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 96
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60

Query: 97  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106

[Close]

BLAST of MELO3C009479 vs. ExPASy TrEMBL
Match: A0A6J1CTX6 (replication protein A 14 kDa subunit B OS=Momordica charantia OX=3673 GN=LOC111014253 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.8e-51
Identity = 106/117 (90.60%), Postives = 109/117 (93.16%), Query Frame = 0


Query: 26  HFRRTLRSLNQMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITV 85
           HF R+L+SLN+MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTDDNQI V
Sbjct: 49  HFPRSLQSLNRMDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQIIV 108

Query: 86  KGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           KGSPPF LSKFVEVIGIADTDKSIR DVWTNFGDSFDTSTFNQLCQ ANGEFK LFI
Sbjct: 109 KGSPPFSLSKFVEVIGIADTDKSIRPDVWTNFGDSFDTSTFNQLCQLANGEFKPLFI 165

[Close]

BLAST of MELO3C009479 vs. ExPASy TrEMBL
Match: A0A6J1J6J3 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111481797 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.2e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 96
           MDTSNPSVFVNAELLR+YVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFSLSKF 60

Query: 97  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]

BLAST of MELO3C009479 vs. ExPASy TrEMBL
Match: A0A6J1L034 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111498639 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 9.3e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 96
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTD+NQI VKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKF 60

Query: 97  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQ ANGEFK LFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI 106

[Close]

BLAST of MELO3C009479 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 151.4 bits (381), Expect = 5.6e-37
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 96
           MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G ++GKSTDD QI VKGSP  PL+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 97  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+ ANGEF+HLFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]

BLAST of MELO3C009479 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-34
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 96
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 97  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]

BLAST of MELO3C009479 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 141.7 bits (356), Expect = 4.4e-34
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0


Query: 37  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 96
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 97  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 143
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

The following BLAST results are available for this feature:

BLAST of MELO3C009479 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023528146.1	9.5e-55	87.79	replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo]	[more]
KAG6580705.1	1.0e-53	87.02	ABC transporter B family member 29, chloroplastic, partial [Cucurbita argyrosper...	[more]
XP_008442847.1	3.4e-52	100.00	PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo]	[more]
XP_022144611.1	3.7e-51	90.60	replication protein A 14 kDa subunit B [Momordica charantia]	[more]
XP_038905423.1	4.9e-51	98.11	replication protein A 14 kDa subunit B [Benincasa hispida]	[more]

BLAST of MELO3C009479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NLG7	7.9e-36	65.09	Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ...	[more]
Q9LXK1	6.2e-33	61.68	Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ...	[more]
Q9SDK9	2.7e-28	51.89	Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of MELO3C009479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGP0	8.4e-65	95.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777000 PE=3 SV=1	[more]
A0A1S3B7E2	1.6e-52	100.00	replication protein A 14 kDa subunit B OS=Cucumis melo OX=3656 GN=LOC103486618 P...	[more]
A0A6J1CTX6	1.8e-51	90.60	replication protein A 14 kDa subunit B OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1J6J3	4.2e-48	93.40	replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1L034	9.3e-48	93.40	replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MELO3C009479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18590.1	5.6e-37	65.09	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.1	4.4e-34	61.68	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G52630.2	4.4e-34	61.68	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013970	Replication factor A protein 3	PFAM	PF08661	Rep_fac-A_3	coord: 37..138 e-value: 9.8E-21 score: 74.1
None	No IPR available	GENE3D	2.40.50.140		coord: 37..142 e-value: 7.8E-21 score: 76.1
None	No IPR available	PANTHER	PTHR47058	REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED	coord: 34..142
None	No IPR available	CDD	cd04479	RPA3	coord: 42..141 e-value: 1.44668E-24 score: 88.8593
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 41..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C009479.1	MELO3C009479.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding