MELO3C008921.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C008921.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionProtein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1
Locationchr08: 22785832 .. 22787430 (+)
RNA-Seq ExpressionMELO3C008921.jh1
SyntenyMELO3C008921.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGGTGAGGGTATAAGTGTATTTATCGAAGTGGATTCAGTCGTTGCAGATGACGATGGATTTGTGATTCGTATAGAAGGTGCAGGATTAGATCCATGACCGAAATTGGAGAGTTTGTGTGCTCTCCATGTTAAGGAAAATTGGAACTTTCAAAGAACATTATTTGAAGAATCAAGTCTGATTGAGATGAGATTGCAAATTTTCATCAGAAGAAAAAGCAAAGATGAAGTTCCTTCGATAAACTCTTTGATGAGGAAGCCATGGATTGGGGGAGAAGAAAGAGAAGAAAAAAGTTTATGAACAAAGGAGGAGATTGTGATGTGAGTCTATATGCTCTGATACCGTTATTTTTAGAATTTGTGAAGTAATTTCTCATTCACTCTTTTATTTATTTTTGTGTAATTATAGTAACTCATTCTTAACAGACTCACAACAGAATAATAAAAACTAAACTAATCTCAACAATATAACTGATAACAGATACTACAAAATTTCAGTCTGCCTTCAATCCATTCACCATATACATAATATATATGGTTGAATTTGAAGATGGACGGACAAAATTCAAGCAATGCTCAATAATTTTTAAAACTCTTTATGTAATAGCTTAAGTAATAAGATTTTATAAAATCAGAGCCATCTAAGTCTGTTCCAGTTTCCGTCAAAACTCAAAAAAGGGAAATTCTAAGAATTTCAACTCGTCCTATTGATTTGAACAGAAAATATCCTTCCATTTTTGAAGAATTTCTTCCTAGAGACATTGGAATTCAACCTCATGTCAAGCTAACCTCTAAAGTTCTTGAACTTGATGCAGAACAACTAATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAATAAAGTAACTGTAAGTGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGTGAGTATTTTGGTTTAAGAGAGCATTGCTTCACCATCTAGGGATATTCTACATATCAAGTAAGGCTGGAACCTACATGGTTGTCTTGAAAGAGGGGTATAAAAGGGGTTCCGTGGTTGAGAGTAATCCTTTGATGAACATTAGAAACAAGTACCTTCACCTTATGAACATAGTGGAGGAAGACAAACAACAAGCAAGCATATCGGTACTCGCCAACAGAAGCAAAAACAGAAAGAAAG

mRNA sequence

ATGGTAGGTGAGGGTATAAGTGTATTTATCGAAGTGGATTCAGTCGTTGCAGATGACGATGGATTTGTGATTCGTATAGAAGAGCCATCTAAGTCTGTTCCAGTTTCCGTCAAAACTCAAAAAAGGGAAATTCTAAGAATTTCAACTCGTCCTATTGATTTGAACAGAAAATATCCTTCCATTTTTGAAGAATTTCTTCCTAGAGACATTGGAATTCAACCTCATGTCAAGCTAACCTCTAAAGTTCTTGAACTTGATGCAGAACAACTAATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAATAAAGTAACTGTAAGTGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGGATATTCTACATATCAAGTAAGGCTGGAACCTACATGGTTGTCTTGAAAGAGGGGTATAAAAGGGGTTCCGTGGTTGAGAGTAATCCTTTGATGAACATTAGAAACAAGTACCTTCACCTTATGAACATAGTGGAGGAAGACAAACAACAAGCAAGCATATCGGTACTCGCCAACAGAAGCAAAAACAGAAAGAAAG

Coding sequence (CDS)

ATGGTAGGTGAGGGTATAAGTGTATTTATCGAAGTGGATTCAGTCGTTGCAGATGACGATGGATTTGTGATTCGTATAGAAGAGCCATCTAAGTCTGTTCCAGTTTCCGTCAAAACTCAAAAAAGGGAAATTCTAAGAATTTCAACTCGTCCTATTGATTTGAACAGAAAATATCCTTCCATTTTTGAAGAATTTCTTCCTAGAGACATTGGAATTCAACCTCATGTCAAGCTAACCTCTAAAGTTCTTGAACTTGATGCAGAACAACTAATGTATCAAACTTCAACTTGTAGACAATTAGCTGCAGATCGACTTGTGAAACTCTTAATGTTATCAAGAGTTAATAAAGTAACTGTAAGTGTCGTTGATCAATTGAAATGGGACTTGGGTCTTCCTAAAGATTATGTTCAAAGTATAGTTCCTGATTTTCCAGATTACTTCAAAGTTGTAGGACATCAAAATTTTGCATCTGGATTAGGTGATACGCGGGTATTGGAATTGGTATGTTGGAACAATGAATTGACCACTTCAGTTGTAGAGAAGATGGCTGCAAAAGTAAAGTTTGATACATATAAAGGAATGCATATTACTTTTCCTATGAAATACTCGAACGGTTTTGAGATGGATAAGTTCAAGAAATGGGTGGATGAGTGGCAAAAGCTACCTTACATCTCTCCCTATGAAAATGCATCACATCTTTCTCCTAATAATGATGAATCTGAAAAGTGGACTGTTGCGATTTTACATGAGCTTCTTCATATGCTTGTCACGAAGAAGACTGAGAAGGAAAATATATTGTGTATAGGGATATTCTACATATCAAGTAAGGCTGGAACCTACATGGTTGTCTTGAAAGAGGGGTATAAAAGGGGTTCCGTGGTTGAGAGTAATCCTTTGATGAACATTAGAAACAAGTACCTTCACCTTATGAACATAGTGGAGGAAGACAAACAACAAGCAAGCATATCGGTACTCGCCAACAGAAGCAAAAACAGAAAGAAA

Protein sequence

MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK
Homology
BLAST of MELO3C008921.jh1 vs. NCBI nr
Match: TYK05469.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 608 bits (1568), Expect = 2.70e-217
Identity = 312/334 (93.41%), Postives = 316/334 (94.61%), Query Frame = 0

Query: 1   MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 60
           MVGEGISVFIEVDSV+ADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS
Sbjct: 47  MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 106

Query: 61  IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS 120
           IFEEFLP DIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTV+
Sbjct: 107 IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN 166

Query: 121 VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 180
           VVDQLKWDLGLPKDYVQSIVP+FPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE
Sbjct: 167 VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 226

Query: 181 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 240
           KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES
Sbjct: 227 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 286

Query: 241 EKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLM 300
           EKWTVAILHELLHMLVTKKTEKENILCI                 EGYKRGSVVESNPLM
Sbjct: 287 EKWTVAILHELLHMLVTKKTEKENILCI-----------------EGYKRGSVVESNPLM 346

Query: 301 NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK 334
           NIRNKYL+LMNIVEEDKQQASISVLANRSKNRKK
Sbjct: 347 NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK 363

BLAST of MELO3C008921.jh1 vs. NCBI nr
Match: KAA0034927.1 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 617 bits (1590), Expect = 1.12e-214
Identity = 317/334 (94.91%), Postives = 317/334 (94.91%), Query Frame = 0

Query: 1   MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 60
           MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS
Sbjct: 47  MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 106

Query: 61  IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS 120
           IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS
Sbjct: 107 IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS 166

Query: 121 VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 180
           VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE
Sbjct: 167 VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 226

Query: 181 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 240
           KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES
Sbjct: 227 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 286

Query: 241 EKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLM 300
           EKWTVAILHELLHMLVTKKTEKENILCI                 EGYKRGSVVESNPLM
Sbjct: 287 EKWTVAILHELLHMLVTKKTEKENILCI-----------------EGYKRGSVVESNPLM 346

Query: 301 NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK 334
           NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK
Sbjct: 347 NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK 363

BLAST of MELO3C008921.jh1 vs. NCBI nr
Match: KAE8648432.1 (hypothetical protein Csa_023661 [Cucumis sativus])

HSP 1 Score: 508 bits (1308), Expect = 1.48e-176
Identity = 264/327 (80.73%), Postives = 279/327 (85.32%), Query Frame = 0

Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDA 87
           EPSKSVP+S+ TQKREILRI TRPIDL RKYPSIFEEFLP  IGIQPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPLSIITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVLELDA 124

Query: 88  E-QLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDY 147
           E QL YQTSTCRQ AADRLVKLLMLSRV+KV VS++DQLKWDLGLPKDYV+SIVPDFPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  KGM+ITFPMKYSNGF
Sbjct: 185 FKVVGHQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGF 244

Query: 208 EMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMDK FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCIG------------------IFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCIG                  IFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 HLMNIVEEDKQQASISVLANRSKNRKK 334
           HLMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTTKHIDTRQQKQEQK 391

BLAST of MELO3C008921.jh1 vs. NCBI nr
Match: XP_031741647.1 (protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucumis sativus])

HSP 1 Score: 508 bits (1308), Expect = 5.64e-175
Identity = 264/327 (80.73%), Postives = 279/327 (85.32%), Query Frame = 0

Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDA 87
           EPSKSVP+S+ TQKREILRI TRPIDL RKYPSIFEEFLP  IGIQPHVKLTSKVLELDA
Sbjct: 106 EPSKSVPLSIITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVLELDA 165

Query: 88  E-QLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDY 147
           E QL YQTSTCRQ AADRLVKLLMLSRV+KV VS++DQLKWDLGLPKDYV+SIVPDFPDY
Sbjct: 166 EEQLTYQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDY 225

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  KGM+ITFPMKYSNGF
Sbjct: 226 FKVVGHQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGF 285

Query: 208 EMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMDK FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 286 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 345

Query: 268 LCIG------------------IFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCIG                  IFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 346 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 405

Query: 328 HLMNIVEEDKQQASISVLANRSKNRKK 334
           HLMN VEED +  +  +   + K  +K
Sbjct: 406 HLMNTVEEDSKTTTKHIDTRQQKQEQK 432

BLAST of MELO3C008921.jh1 vs. NCBI nr
Match: XP_016900351.1 (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 [Cucumis melo])

HSP 1 Score: 501 bits (1290), Expect = 1.37e-172
Identity = 261/327 (79.82%), Postives = 277/327 (84.71%), Query Frame = 0

Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDA 87
           EPSKSVPVS+ TQKREILRI  RPIDL RKYPSIFEEFLP  IG+QPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDA 124

Query: 88  E-QLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDY 147
           E QL YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVG QNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K M ITFPMKYSNGF
Sbjct: 185 FKVVGRQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMDITFPMKYSNGF 244

Query: 208 EMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMDK FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCIG------------------IFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCIG                  IFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 HLMNIVEEDKQQASISVLANRSKNRKK 334
           HLMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTTKHISTRQQKQEQK 391

BLAST of MELO3C008921.jh1 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-39
Identity = 105/306 (34.31%), Postives = 169/306 (55.23%), Query Frame = 0

Query: 26  IEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLEL 85
           ++EP++ +P+S  ++K     +ST+     RK+PSIFEEF+  +  + P  +LT +  EL
Sbjct: 60  VQEPNRCIPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATEL 119

Query: 86  D-AEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFP 145
           D  E+++YQTS       DRL KL+++S+ N + +S+V  +KW LGLP DY+Q    +  
Sbjct: 120 DRQERVVYQTSA--DDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLD 179

Query: 146 DYFKVVGHQNFASGLGDTRVLELVCWN-NELTTSVVEKMAAKVKFDTYKGMHITFPMKYS 205
             F+ V  ++   GL        V +N  +   SV++K A K +        I FP+  S
Sbjct: 180 SSFRFVDMEDGVKGLA-------VDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPS 239

Query: 206 NGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK 265
            G  +  K + W+ E+QKLPY+SPY++ S L P++D +EK  V  LHELL + V    E+
Sbjct: 240 KGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAER 299

Query: 266 ENILCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRN 311
           + +LC+                   IFY+S K  T   +L+E Y+  + VE++P++ +R 
Sbjct: 300 KKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRK 355

BLAST of MELO3C008921.jh1 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-20
Identity = 77/289 (26.64%), Postives = 141/289 (48.79%), Query Frame = 0

Query: 50  RPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLL 109
           R I L R++P +F+        ++  +   ++ L LD  +L  ++     LA  +L KLL
Sbjct: 110 RLIALLRRFPGVFDVVEEGVYSLRFRLTPAAERLYLDELRLRNES---EGLAVAKLRKLL 169

Query: 110 MLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVC 169
           M+S+  ++ +  V  LK DLGLP ++  ++   +P YF+VV        +     LEL  
Sbjct: 170 MMSQEKRILIEKVAHLKHDLGLPPEFRDTVCLRYPQYFRVV-------RMDRGPALELTH 229

Query: 170 WNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK-KWVDEWQKL 229
           W+ EL  S  E  +  ++ +    + + I  P+K++      G ++ + + + +  ++++
Sbjct: 230 WDPELAVSAAELAEEESRAREAEERNLIIDRPLKFNRVRLPKGLKLTRGEARRIARFKEM 289

Query: 230 PYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI------------- 289
           PYISPY + SHL   +DE EK    ++HE+L + V K+T  +++                
Sbjct: 290 PYISPYADFSHLRSGSDEKEKHACGVVHEILSLTVEKRTLVDHLTHFREEFRFSQSLRGM 349

Query: 290 -----GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLHLMNI 313
                 +FY+S K     V L+E YK   +VE N L+ ++ K   L+ +
Sbjct: 350 IIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLVLLKEKMRALVAV 388

BLAST of MELO3C008921.jh1 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.9e-19
Identity = 77/289 (26.64%), Postives = 141/289 (48.79%), Query Frame = 0

Query: 50  RPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLL 109
           R I L +++P +FE        ++  +   ++ L LD   L  ++     LA  +L KLL
Sbjct: 116 RLIALLKRFPGVFEVVEEGVYSLRFRLTPAAERLYLDELHLKNES---EGLAVTKLRKLL 175

Query: 110 MLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVC 169
           M+S+  ++ +  +  LK DLGLP ++  +I   +P YF+VV       G G    LEL  
Sbjct: 176 MMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFRVV---QMDRGPG----LELTH 235

Query: 170 WNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK-KWVDEWQKL 229
           W+ EL  S  E  +   + + +  + + I  P+K++      G ++ + + + V +++++
Sbjct: 236 WDPELAVSAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLKLSRGEARRVAQFKEM 295

Query: 230 PYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI------------- 289
           PYISPY + SHL   + E EK    ++HE+L + + K+T  +++                
Sbjct: 296 PYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLTHFREEFRFSQSLRGM 355

Query: 290 -----GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLHLMNI 313
                 +FY+S K     V L+E YK   +VE + L+ ++ K   L+ +
Sbjct: 356 LIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRALVAV 394

BLAST of MELO3C008921.jh1 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-18
Identity = 74/294 (25.17%), Postives = 137/294 (46.60%), Query Frame = 0

Query: 45  LRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADR 104
           L+   R I L RKYP +FE  +  +       K+TS+   L  +++  + +    +   +
Sbjct: 126 LKKRRRFIALLRKYPGVFE--IVEEGAYSLRFKMTSEAERLYLDEMRIR-NELEDVLVVK 185

Query: 105 LVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRV 164
           L KL+M+S   ++ +  +  LK DLGLP ++  +I   +P YF+VV      +       
Sbjct: 186 LRKLVMMSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPA------- 245

Query: 165 LELVCWNNELTTSVVE--KMAAKVKFDTYKGMHITFPMKYS-----NGFEMDKFK-KWVD 224
           LEL  W+ EL  S  E  +   + +    + + I  P K++      G  + K + + + 
Sbjct: 246 LELTHWDPELAVSAAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKIS 305

Query: 225 EWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI-------- 284
           +++ + YISPY++ SHL     E EK    ++HELL +   K+T  +++           
Sbjct: 306 QFRDMQYISPYKDFSHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQ 365

Query: 285 ----------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLHLMNI 313
                      +FY+S K     V L+E Y+   +++ +PL  ++ K   L+++
Sbjct: 366 QLRGMLIRHPDLFYVSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSV 409

BLAST of MELO3C008921.jh1 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.5e-18
Identity = 79/286 (27.62%), Postives = 138/286 (48.25%), Query Frame = 0

Query: 57  KYPSIFEEFLPRDIGIQPHVKLTSKVLEL---DAEQLMYQTSTCRQLAADRLVKLLMLSR 116
           K+P +FE +    +    + +LT K L+    + E ++ Q       A  RL KL+M+S 
Sbjct: 107 KFPHVFEIY-EHPVQRILYCRLTRKALDQIRHEHEAVLDQIPD----AVTRLRKLVMMSN 166

Query: 117 VNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNE 176
             ++ +  V   + + GLP+D+  S++   P +F+++  +         + +E+V  +  
Sbjct: 167 TGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRD-----KYIEIVEKDPN 226

Query: 177 LTTSVVEKMAA---KVKFDTYKGMHITFPMKYSNGFEMDK-FKKWVDEWQKLPYISPYEN 236
           L+   +E++     + K    + +  +F + +  GF++ K F+  V +WQ+LPY SPYE+
Sbjct: 227 LSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYED 286

Query: 237 ASHLSPNNDES----EKWTVAILHELLHMLVTKKTEKENILCI----------------- 296
            S     + E+    EK +VA +HELL + V KK   E I                    
Sbjct: 287 ISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQH 346

Query: 297 -GIFYISSKAG---TYMVVLKEGYKRGSVVESNPLMNIRNKYLHLM 311
            GIFYIS++      + V L+EGYKRG +VE N +   R +   L+
Sbjct: 347 QGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELV 382

BLAST of MELO3C008921.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C507 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001750 PE=4 SV=1)

HSP 1 Score: 608 bits (1568), Expect = 1.31e-217
Identity = 312/334 (93.41%), Postives = 316/334 (94.61%), Query Frame = 0

Query: 1   MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 60
           MVGEGISVFIEVDSV+ADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS
Sbjct: 47  MVGEGISVFIEVDSVIADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 106

Query: 61  IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS 120
           IFEEFLP DIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTV+
Sbjct: 107 IFEEFLPGDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVN 166

Query: 121 VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 180
           VVDQLKWDLGLPKDYVQSIVP+FPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE
Sbjct: 167 VVDQLKWDLGLPKDYVQSIVPNFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 226

Query: 181 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 240
           KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES
Sbjct: 227 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 286

Query: 241 EKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLM 300
           EKWTVAILHELLHMLVTKKTEKENILCI                 EGYKRGSVVESNPLM
Sbjct: 287 EKWTVAILHELLHMLVTKKTEKENILCI-----------------EGYKRGSVVESNPLM 346

Query: 301 NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK 334
           NIRNKYL+LMNIVEEDKQQASISVLANRSKNRKK
Sbjct: 347 NIRNKYLYLMNIVEEDKQQASISVLANRSKNRKK 363

BLAST of MELO3C008921.jh1 vs. ExPASy TrEMBL
Match: A0A5A7T026 (Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold103G00590 PE=4 SV=1)

HSP 1 Score: 617 bits (1590), Expect = 5.43e-215
Identity = 317/334 (94.91%), Postives = 317/334 (94.91%), Query Frame = 0

Query: 1   MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 60
           MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS
Sbjct: 47  MVGEGISVFIEVDSVVADDDGFVIRIEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPS 106

Query: 61  IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS 120
           IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS
Sbjct: 107 IFEEFLPRDIGIQPHVKLTSKVLELDAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVS 166

Query: 121 VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 180
           VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE
Sbjct: 167 VVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVE 226

Query: 181 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 240
           KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES
Sbjct: 227 KMAAKVKFDTYKGMHITFPMKYSNGFEMDKFKKWVDEWQKLPYISPYENASHLSPNNDES 286

Query: 241 EKWTVAILHELLHMLVTKKTEKENILCIGIFYISSKAGTYMVVLKEGYKRGSVVESNPLM 300
           EKWTVAILHELLHMLVTKKTEKENILCI                 EGYKRGSVVESNPLM
Sbjct: 287 EKWTVAILHELLHMLVTKKTEKENILCI-----------------EGYKRGSVVESNPLM 346

Query: 301 NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK 334
           NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK
Sbjct: 347 NIRNKYLHLMNIVEEDKQQASISVLANRSKNRKK 363

BLAST of MELO3C008921.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KRP2 (PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G420350 PE=4 SV=1)

HSP 1 Score: 508 bits (1308), Expect = 7.43e-177
Identity = 264/327 (80.73%), Postives = 279/327 (85.32%), Query Frame = 0

Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDA 87
           EPSKSVP+S+ TQKREILRI TRPIDL RKYPSIFEEFLP  IGIQPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPLSIITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVLELDA 124

Query: 88  E-QLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDY 147
           E QL YQTSTCRQ AADRLVKLLMLSRV+KV VS++DQLKWDLGLPKDYV+SIVPDFPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPDFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVGHQNFASG GD RVLELVCWNNEL TSV+EKMA KVK D  KGM+ITFPMKYSNGF
Sbjct: 185 FKVVGHQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDKSKGMYITFPMKYSNGF 244

Query: 208 EMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMDK FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCIG------------------IFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCIG                  IFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 HLMNIVEEDKQQASISVLANRSKNRKK 334
           HLMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTTKHIDTRQQKQEQK 391

BLAST of MELO3C008921.jh1 vs. ExPASy TrEMBL
Match: A0A1S4DWI2 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489660 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 6.62e-173
Identity = 261/327 (79.82%), Postives = 277/327 (84.71%), Query Frame = 0

Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDA 87
           EPSKSVPVS+ TQKREILRI  RPIDL RKYPSIFEEFLP  IG+QPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDA 124

Query: 88  E-QLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDY 147
           E QL YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVG QNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K M ITFPMKYSNGF
Sbjct: 185 FKVVGRQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMDITFPMKYSNGF 244

Query: 208 EMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMDK FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCIG------------------IFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCIG                  IFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 HLMNIVEEDKQQASISVLANRSKNRKK 334
           HLMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTTKHISTRQQKQEQK 391

BLAST of MELO3C008921.jh1 vs. ExPASy TrEMBL
Match: A0A1S4DXA3 (protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489660 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 1.51e-172
Identity = 261/327 (79.82%), Postives = 277/327 (84.71%), Query Frame = 0

Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDA 87
           EPSKSVPVS+ TQKREILRI  RPIDL RKYPSIFEEFLP  IG+QPHVKLTSKVLELDA
Sbjct: 65  EPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVLELDA 124

Query: 88  E-QLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDY 147
           E QL YQTSTCRQ AADRL+KLLMLSRV+KV VS++DQLKWDLGLPKD+VQSIVP+FPDY
Sbjct: 125 EEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPEFPDY 184

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTYKGMHITFPMKYSNGF 207
           FKVVG QNFASG GD RVLELVCWNNEL TSV+EKMAAKVK DT K M ITFPMKYSNGF
Sbjct: 185 FKVVGRQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVKHDTSKRMDITFPMKYSNGF 244

Query: 208 EMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENI 267
           EMDK FKKWVDEWQKLPYISPYENASHLSPN+DES+KWTVAILHELLHMLVTKKTEKENI
Sbjct: 245 EMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKTEKENI 304

Query: 268 LCIG------------------IFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYL 327
           LCIG                  IFYISSKAGTY VVLKEGYKRGSVVESNPLMNIRNKYL
Sbjct: 305 LCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNIRNKYL 364

Query: 328 HLMNIVEEDKQQASISVLANRSKNRKK 334
           HLMN VEED +  +  +   + K  +K
Sbjct: 365 HLMNTVEEDSKTTTKHISTRQQKQEQK 391

BLAST of MELO3C008921.jh1 vs. TAIR 10
Match: AT1G71850.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 323.2 bits (827), Expect = 2.5e-88
Identity = 164/317 (51.74%), Postives = 226/317 (71.29%), Query Frame = 0

Query: 28  EPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDA 87
           EP+KSVP+SV T +++ LR+  RPI+  R +PS+F+EFLP  IGI PH+ LT ++L  DA
Sbjct: 60  EPAKSVPISVITSQKDSLRVPLRPIEFIRSFPSVFQEFLPGGIGIHPHISLTPEILNHDA 119

Query: 88  -EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDY 147
            EQL+Y + T +Q  ADRL+KLLM++R+NK+ + ++D LKWDLGLPKDYV+++VP+FPDY
Sbjct: 120 DEQLVYGSETYKQGLADRLLKLLMINRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDY 179

Query: 148 FKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFDTY-KGMHITFPMKYSNG 207
           F+V+     +   G +  LELVCW+NE   SV+EK A  ++   Y KG  I FPMK+SNG
Sbjct: 180 FRVIK----SKLRGCSGELELVCWSNEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNG 239

Query: 208 FEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKEN 267
           F +D K KKW+D+WQKLPYISPYENA HLS  +DES+KW  A+LHE++++ V+KK EK+ 
Sbjct: 240 FVVDKKMKKWIDDWQKLPYISPYENALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDA 299

Query: 268 ILCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKY 324
           IL +                  GIFY+SSK  T+ VVL++GYKRG ++ESN L+  RN+Y
Sbjct: 300 ILHLGEFMGLRSRFKRVLHNHPGIFYLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRY 359

BLAST of MELO3C008921.jh1 vs. TAIR 10
Match: AT4G24320.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 203.0 bits (515), Expect = 3.8e-52
Identity = 119/330 (36.06%), Postives = 189/330 (57.27%), Query Frame = 0

Query: 26  IEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLEL 85
           +  PSKS+P+S  +  + ++ +        +KYPS+F  F P       HV+LT + L L
Sbjct: 52  VSSPSKSLPLSSLSLLKPLVNLHITAAAFFQKYPSVFTTFQPSP-SHPLHVRLTPQALTL 111

Query: 86  -DAEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFP 145
              E+ ++ +   R +   RL K LML+    + + V+D+ ++DLGLP+DY+ S++ D+P
Sbjct: 112 HKEEETIHLSPPQRNVTVQRLTKFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYP 171

Query: 146 DYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEKMAAKVKFD-TYKGMHITFPMKYS 205
           +YF+V   ++  +G   T  L +    N L  S +E+  A +      KG+ I + M + 
Sbjct: 172 EYFEVTEIKDRLTG-EKTLALTISSRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFP 231

Query: 206 NGFEMDK-FKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK 265
            G+E+ K  K WV++WQ LPYISPYENA HL   +D++EKW VA+LHELL +LV+KKTE 
Sbjct: 232 KGYELHKRVKNWVEQWQNLPYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTET 291

Query: 266 ENILCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRN 325
           +N++C+                  GIFY+S K  T  VVL+E Y +  ++E +PLM IR+
Sbjct: 292 DNVICLGEYLGFGMRFKKALVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRH 351

Query: 326 KYLHLMNIVEEDKQQASISVLANRSKNRKK 335
           +Y++LM+     K++  +  +     NRKK
Sbjct: 352 QYIYLMSKSGRGKKRDYVHGV--ERSNRKK 377

BLAST of MELO3C008921.jh1 vs. TAIR 10
Match: AT3G58520.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 164.1 bits (414), Expect = 2.0e-40
Identity = 99/285 (34.74%), Postives = 158/285 (55.44%), Query Frame = 0

Query: 55  NRKYPSIFEEFLPRDIGIQPHVKLTSKVLELDA-EQLMYQTSTCRQLAADRLVKLLMLSR 114
           N++YP++F EF        P  KLT   L LD+ E++++Q+        +RL ++LM+ R
Sbjct: 79  NKRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEAD--TVERLCRVLMMMR 138

Query: 115 VNKVTVSVVDQLKWDLGLPKDYVQSIVPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNE 174
              V++  +  LK+DLGLP +Y +++V  +PD+F  V   N          L+LV W +E
Sbjct: 139 SKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASN------GNPCLKLVKWRDE 198

Query: 175 LTTSVVEK-------MAAKVKFDTYK--GMHITFPMKYSNGF-EMDKFKKWVDEWQKLPY 234
              S ++K          + ++  +K     +TFPM +  G+    K K W+DE+QKLPY
Sbjct: 199 FAFSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPY 258

Query: 235 ISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEKENILCI--------------- 294
           ISPY++ S++ P +D  EK  VA+LHELL + + KKT++  +  +               
Sbjct: 259 ISPYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFT 318

Query: 295 ---GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRNKYLHLM 311
              GIFY+S K  T  V+LKEGY+RG +V+ +PL  +R+K+ H+M
Sbjct: 319 RYPGIFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVM 355

BLAST of MELO3C008921.jh1 vs. TAIR 10
Match: AT2G39120.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 163.3 bits (412), Expect = 3.3e-40
Identity = 105/306 (34.31%), Postives = 169/306 (55.23%), Query Frame = 0

Query: 26  IEEPSKSVPVSVKTQKREILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTSKVLEL 85
           ++EP++ +P+S  ++K     +ST+     RK+PSIFEEF+  +  + P  +LT +  EL
Sbjct: 60  VQEPNRCIPISAISKKTRQFDVSTKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATEL 119

Query: 86  D-AEQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSIVPDFP 145
           D  E+++YQTS       DRL KL+++S+ N + +S+V  +KW LGLP DY+Q    +  
Sbjct: 120 DRQERVVYQTSA--DDLRDRLKKLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLD 179

Query: 146 DYFKVVGHQNFASGLGDTRVLELVCWN-NELTTSVVEKMAAKVKFDTYKGMHITFPMKYS 205
             F+ V  ++   GL        V +N  +   SV++K A K +        I FP+  S
Sbjct: 180 SSFRFVDMEDGVKGLA-------VDYNGGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPS 239

Query: 206 NGFEMD-KFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILHELLHMLVTKKTEK 265
            G  +  K + W+ E+QKLPY+SPY++ S L P++D +EK  V  LHELL + V    E+
Sbjct: 240 KGCRLRVKIEDWLMEFQKLPYVSPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAER 299

Query: 266 ENILCI------------------GIFYISSKAGTYMVVLKEGYKRGSVVESNPLMNIRN 311
           + +LC+                   IFY+S K  T   +L+E Y+  + VE++P++ +R 
Sbjct: 300 KKLLCLKKHFGLPQKVHKAFERHPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRK 355

BLAST of MELO3C008921.jh1 vs. TAIR 10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 163.3 bits (412), Expect = 3.3e-40
Identity = 104/319 (32.60%), Postives = 171/319 (53.61%), Query Frame = 0

Query: 26  IEEPSKSVPVSVKTQK-----REILRISTRPIDLNRKYPSIFEEFLPRDIGIQPHVKLTS 85
           +++  K  P    T K     +++L ++   +   R+YP++F EF        P  KLT 
Sbjct: 57  LKDAIKRSPTGFLTAKSVADWQKLLGLTVPVLRFLRRYPTLFHEFPHARYASLPCFKLTD 116

Query: 86  KVLELDA-EQLMYQTSTCRQLAADRLVKLLMLSRVNKVTVSVVDQLKWDLGLPKDYVQSI 145
             L LD+ E++++Q+        +RL ++LM+ R   V++  +  LK+DLGLP +Y +++
Sbjct: 117 TALMLDSQEEIIHQSHEAD--TVERLCRVLMMMRSKTVSLRSLHSLKFDLGLPDNYEKTL 176

Query: 146 VPDFPDYFKVVGHQNFASGLGDTRVLELVCWNNELTTSVVEK-------MAAKVKFDTYK 205
           V  +PD+F  V   N          L+LV W +E   S ++K          + ++  +K
Sbjct: 177 VMKYPDHFCFVKASN------GNPCLKLVKWRDEFAFSALQKRNEDNDVSGEESRYREFK 236

Query: 206 --GMHITFPMKYSNGF-EMDKFKKWVDEWQKLPYISPYENASHLSPNNDESEKWTVAILH 265
                +TFPM +  G+    K K W+DE+QKLPYISPY++ S++ P +D  EK  VA+LH
Sbjct: 237 RGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPYISPYDDPSNIDPESDLMEKRAVAVLH 296

Query: 266 ELLHMLVTKKTEKENILCI------------------GIFYISSKAGTYMVVLKEGYKRG 311
           ELL + + KKT++  +  +                  GIFY+S K  T  V+LKEGY+RG
Sbjct: 297 ELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTRYPGIFYLSLKCKTTTVILKEGYRRG 356

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK05469.12.70e-21793.41protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa][more]
KAA0034927.11.12e-21494.91protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis melo var. makuwa][more]
KAE8648432.11.48e-17680.73hypothetical protein Csa_023661 [Cucumis sativus][more]
XP_031741647.15.64e-17580.73protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucumis sativus][more]
XP_016900351.11.37e-17279.82PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q9ZUZ64.7e-3934.31Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W... [more]
B6TTV81.7e-2026.64Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=... [more]
Q65XL51.9e-1926.64Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon... [more]
A0MFS52.7e-1825.17Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3... [more]
Q689D63.5e-1827.62Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1... [more]
Match NameE-valueIdentityDescription
A0A5D3C5071.31e-21793.41Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11... [more]
A0A5A7T0265.43e-21594.91Protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 OS=Cucumis melo var. makuwa OX=11... [more]
A0A0A0KRP27.43e-17780.73PORR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G420350 PE=4 S... [more]
A0A1S4DWI26.62e-17379.82protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A1S4DXA31.51e-17279.82protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103... [more]
Match NameE-valueIdentityDescription
AT1G71850.12.5e-8851.74Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT4G24320.13.8e-5236.06Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT3G58520.22.0e-4034.74Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT2G39120.13.3e-4034.31Ubiquitin carboxyl-terminal hydrolase family protein [more]
AT3G58520.13.3e-4032.60Ubiquitin carboxyl-terminal hydrolase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021099Plant organelle RNA recognition domainPFAMPF11955PORRcoord: 27..312
e-value: 1.0E-81
score: 274.4
NoneNo IPR availablePANTHERPTHR31476:SF16F14O23.23 PROTEINcoord: 27..324
IPR045040PORR familyPANTHERPTHR31476PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTICcoord: 27..324

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C008921.jh1.t1MELO3C008921.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding