MELO3C006881 (gene) Melon (DHL92) v4

Overview


Name	MELO3C006881
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerases II, IV and V subunit 6A
Location	chr06: 6909135 .. 6911741 (-)
RNA-Seq Expression	MELO3C006881
Synteny	MELO3C006881

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGCGGATCATACATCCTAAGCCTCGAGATACGAAAAGATTTTTACGAACTTATGCTTATTTCTTGATGATTGTGTCCAGTTCAATAAGCGTTATATTTTACTGAACGACTTTATGTTAAGTTGGTTTCGCTTATTGTTGGCAATTACACGTTTTCTTCATTAGTTAAAAAGGAACTCTGCTAACCTTCATCTTTATTATGAATTACTGTGTCTGAAAATTAAACATTGTGTGTTGAGGGATTTCTAAAAAGCTTTCCCGTTAGTAGTTTATTTAATCTGGGTACCCCTCTTGCTGTATATGTATCTTTAGATCCTCGTTAGCAACATCCAAAACTTACTTATTATTATCAGTTCTTCAAAGTTCAAAGTACTAAGTAGCCTTTTATTCACTTTGTACCCTGTTTCAGATGCCCTTTGTTAATTTGCATGAAGGACTCTGCCCTACTTCTAGTATACAGTTAGTTCATCAGTTTCTGTATCAACTTTATTTTAATTTTAATTTTTTAAAATTATCTGTTAGTTTGAATTTTGACTGTTTATAGTGTTTTGCATTACATTTTCCAAGTTCTTCCTTATTTGGGTTAATAATAAGTCTTGTTAGTTATGCAAAATATACACAATGAAAGCAGATAAATGGAGTATGGTTGTAAAAGTCTATACATGAGGACTTGAAACCCAACTCTTGGATCCACTCATAACAGTTTGTTATTTGAAGTAAATATACTAAAATTGCATTCTTAACTGTAGTTTGACCACACTGGTATTTATATTGTTTTGTGAAAGGTCTTCATATTTTCATTTTGGAATATTGGATGGTTCCAATATTTTTCCGCTCCTACGTTTATAAGTGATCTTATTCTGCAGATATGAAGATGAGCCACCAGAACCTGAGATTGAGGTAAGAAAAAATTAGTTCAATTTCATTTGAAAGAAAGTATTTTCTTTTTTAAGTTGATTGATCATAGTGACACTGAGAAGTGAGAATCATATACAGGAAGGTGCTGAAGAAGAATTGGATAATACTAACAATGATGATATTACTGGTGAACCTGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGCGCGTAAAACCTCAAAATTTATGACAAAATATGAACGTGCTAGGATTTTGGGTACACGTGCCCTCCAAATCAGGTTCCCTTTTTAAAATTGGCCACATCCATTATGTGCGCCTAGTTGATAAATAATATGATGATTGTTTTTTCTTTTGGGCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGGTTAGATACTCAATTATTAAGCTAAAACCTTTGAAAGTTCTCTTTGTTTTTAGCATTCAGCTGAATGTATTTTTGTTTGTGCATGATAGTTAGAATGCCTGCTCGATATAAATATGGTTAAATTTATATCGTATAAGAGTACCCTCAAACTTTGAGGTCGGGGGTGAAATTAAAGGCTTTCAAACAATACAGTGTAATTGAAACTGACGTCAAAGCTTATGAAATTCGTATGATGATTGTCTACGCTTTCACCTGCCATTCATATTCATGGGTTTGTAATAGCTTCCGCTTTTATAAGGAATGAAGATGTATGCTTGTCTGCCTGGGTGCTTTGCATTCTTTTGGTTGGCTGTAGCATTGTTCTCTGGCATCTTATCTAATCTTGTACTGTCTTAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATTCGTCGCTACCTGCCAGATGGAAGGTTGAGCCTCTTAGATCTTATTCTTTCATATTTAACATTCGGATTGACCCGCCGGCAGAAACGTGTAGAAAACTGACAATATGCGAAGCAGTCGGTTTGGTGCTTTATGTATATGTATAGGTTTAGAGATATCAACTATACTGAGTATAGTTGGTCGTCTTAGTCTTAGAGTGTGTTTGAATTATCTATGAAATAAAATGTTTTTCAAAAATAAATTTTCTTTTGAACACTTTCTTTAAAATGAGTTTAAAATTTAAACACTTACACGTTTGATTAAATCTTTTTATAATTGTTTATATACATAATTTTGTTTAAAAAACTATTTTCTCAAAATTTGGTTCTTAGTGTTGTCTTTAAAGTGCATTATTTTTTAAAATGCATTTTGAAGAGTTACCAAACATCTCAAATTTTTTAAAAATAATTTTCTTTAAAATTTAAACAAGGTATTAGAGTTAGAGAAAAATAAGTATGAGGTTTTGGAAGCAACTTTTCTAGTTCTCTGTAGCGTTAAATTATTGAAACTCTGTTGGTTTTCGGCAGTTATGAAGACTGGGGCGTCGATGAACTGATAGTGGAAGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGATTAATCTGTGTTTGTTGTTACCAAATGTGAAATACTAGCGATTGGAACAAGAAGTTCCCATTTATGCAGTAGTGAAAAGGAAAACAGGACTACTGTTGTTTGTACTCATAATTCTCCTCTGTGATATATTGGAAAGGAACCTCTGTTAATGTATTGACTGGCGTTATTTTAACGACATTAAATATAAATACTAGAACGGATCTAATGAAAATAGAGTTGAATTTTGTGTTT

mRNA sequence

CTTGCGGATCATACATCCTAAGCCTCGAGATACGAAAAGATTTTTACGAACTTATGCTTATTTCTTGATGATTGTGTCCAGTTCAATAAGCGTTATATTTTACTGAACGACTTTATGTTAAGTTGGTTTCGCTTATTGTTGGCAATTACACGTTTTCTTCATTAGTTAAAAAGGAACTCTGCTAACCTTCATCTTTATTATGAATTACTGTGTCTGAAAATTAAACATTGTGTGTTGAGGGATTTCTAAAAAGCTTTCCCGTTAGTAGTTTATTTAATCTGGGTACCCCTCTTGCTGTATATGTATCTTTAGATCCTCGTTAGCAACATCCAAAACTTACTTATTATTATCAGTTCTTCAAAGTTCAAAGTACTAAGTAGCCTTTTATTCACTTTGTACCCTGTTTCAGATGCCCTTTGTTAATTTGCATGAAGGACTCTGCCCTACTTCTAGTATACAATATGAAGATGAGCCACCAGAACCTGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATACTAACAATGATGATATTACTGGTGAACCTGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGCGCGTAAAACCTCAAAATTTATGACAAAATATGAACGTGCTAGGATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATTCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTCGATGAACTGATAGTGGAAGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGATTAATCTGTGTTTGTTGTTACCAAATGTGAAATACTAGCGATTGGAACAAGAAGTTCCCATTTATGCAGTAGTGAAAAGGAAAACAGGACTACTGTTGTTTGTACTCATAATTCTCCTCTGTGATATATTGGAAAGGAACCTCTGTTAATGTATTGACTGGCGTTATTTTAACGACATTAAATATAAATACTAGAACGGATCTAATGAAAATAGAGTTGAATTTTGTGTTT

Coding sequence (CDS)

ATGCCCTTTGTTAATTTGCATGAAGGACTCTGCCCTACTTCTAGTATACAATATGAAGATGAGCCACCAGAACCTGAGATTGAGGAAGGTGCTGAAGAAGAATTGGATAATACTAACAATGATGATATTACTGGTGAACCTGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGCGCGTAAAACCTCAAAATTTATGACAAAATATGAACGTGCTAGGATTTTGGGTACACGTGCCCTCCAAATCAGCATGAATGCTCCTGTGATGGTCGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAACTTCGTGAGCGGAAGATACCCTTCACCATTCGTCGCTACCTGCCAGATGGAAGTTATGAAGACTGGGGCGTCGATGAACTGATAGTGGAAGACTCTTGGAAGAGGCAAGTTGGCGGCGCTTGA

Protein sequence

MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA

Homology

[Close]

BLAST of MELO3C006881 vs. NCBI nr
Match: KAA0033618.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 4.6e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE 60
           MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE
Sbjct: 1   MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE 60

Query: 61  RARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 120
           RARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR
Sbjct: 61  RARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 120

Query: 121 YLPDGSYEDWGVDELIVEDSWKRQVGGA 149
           YLPDGSYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YLPDGSYEDWGVDELIVEDSWKRQVGGA 148

[Close]

BLAST of MELO3C006881 vs. NCBI nr
Match: TYK22284.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE 60
           MP +NLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE
Sbjct: 1   MPLINLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE 60

Query: 61  RARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 120
           R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR
Sbjct: 61  RPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 120

Query: 121 YLPDGSYEDWGVDELIVEDSWKRQVGGA 149
           YLPDGSYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YLPDGSYEDWGVDELIVEDSWKRQVGGA 148

[Close]

BLAST of MELO3C006881 vs. NCBI nr
Match: XP_008439178.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 8.1e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI
Sbjct: 13  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 72

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV
Sbjct: 73  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132

Query: 138 EDSWKRQVGGA 149
           EDSWKRQVGGA
Sbjct: 133 EDSWKRQVGGA 143

[Close]

BLAST of MELO3C006881 vs. NCBI nr
Match: XP_022141284.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia])

HSP 1 Score: 250.0 bits (637), Expect = 1.3e-62
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           YEDEPPEPE+EEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKTSKFMTKYERARI
Sbjct: 13  YEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKTSKFMTKYERARI 72

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV
Sbjct: 73  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132

Query: 138 EDSWKRQVGGA 149
           EDSWKRQVGGA
Sbjct: 133 EDSWKRQVGGA 143

[Close]

BLAST of MELO3C006881 vs. NCBI nr
Match: XP_022923151.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022984652.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_022984654.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023551729.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG6576740.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014784.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 249.2 bits (635), Expect = 2.2e-62
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           Y+DEPPEPE+EEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKTSKFMTKYERARI
Sbjct: 13  YDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARI 72

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV
Sbjct: 73  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132

Query: 138 EDSWKRQVGGA 149
           EDSWKRQVGGA
Sbjct: 133 EDSWKRQVGGA 143

[Close]

BLAST of MELO3C006881 vs. ExPASy Swiss-Prot
Match: Q9FJ98 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.9e-57
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           YEDEP EPEIEEG EE+++   NDD+ GEP+EAE+K + EPV+R RKTSKFMTKYERARI
Sbjct: 14  YEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRKTSKFMTKYERARI 73

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIV
Sbjct: 74  LGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEWGVDELIV 133

Query: 138 EDSWKRQVGG 148
           EDSWKRQVGG
Sbjct: 134 EDSWKRQVGG 143

[Close]

BLAST of MELO3C006881 vs. ExPASy Swiss-Prot
Match: Q9SJ96 (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.8e-54
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           YEDEP EPEIEEG EE+ D   NDD+  +P+E E+K + EPV+R RKTSKFMTKYERARI
Sbjct: 14  YEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRKTSKFMTKYERARI 73

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIV
Sbjct: 74  LGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYEEWGVDELIV 133

Query: 138 EDSWKRQVGG 148
           EDSWKRQVGG
Sbjct: 134 EDSWKRQVGG 143

[Close]

BLAST of MELO3C006881 vs. ExPASy Swiss-Prot
Match: P61219 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-28
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 26  EIEEGAEEELDNTNNDDITG-EPVEAEEKEDEEPVERARKTSKFMTKYERARILGTRALQ 85
           ++EE  +E LD+  N +  G E VE     +     + R T+ +MTKYERAR+LGTRALQ
Sbjct: 15  DVEE--DEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQ 74

Query: 86  ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 140
           I+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  IAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127

[Close]

BLAST of MELO3C006881 vs. ExPASy Swiss-Prot
Match: O88828 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-28
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 26  EIEEGAEEELDNTNNDDITG-EPVEAEEKEDEEPVERARKTSKFMTKYERARILGTRALQ 85
           ++EE  +E LD+  N +  G E VE     +     + R T+ +MTKYERAR+LGTRALQ
Sbjct: 15  DVEE--DEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQ 74

Query: 86  ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 140
           I+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  IAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIISD 127

[Close]

BLAST of MELO3C006881 vs. ExPASy Swiss-Prot
Match: P61217 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus OX=10029 GN=POLR2F PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.7e-28
Identity = 73/115 (63.48%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 26  EIEEGAEEELDNTNNDDITG-EPVEAEEKEDEEPVERARKTSKFMTKYERARILGTRALQ 85
           ++EE  +E LD+  N +  G E VE     +     + R T+ +MTKYERAR+LGTRALQ
Sbjct: 15  DVEE--DEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQ 74

Query: 86  ISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVED 140
           I+M APVMVELEGETDPL IAMKEL+ RKIP  IRRYLPDGSYEDWGVDELI+ D
Sbjct: 75  IAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD 127

[Close]

BLAST of MELO3C006881 vs. ExPASy TrEMBL
Match: A0A5A7SSQ6 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00540 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.2e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE 60
           MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE
Sbjct: 1   MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE 60

Query: 61  RARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 120
           RARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR
Sbjct: 61  RARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 120

Query: 121 YLPDGSYEDWGVDELIVEDSWKRQVGGA 149
           YLPDGSYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YLPDGSYEDWGVDELIVEDSWKRQVGGA 148

[Close]

BLAST of MELO3C006881 vs. ExPASy TrEMBL
Match: A0A5D3DFB9 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold440G00400 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 145/148 (97.97%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   MPFVNLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE 60
           MP +NLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE
Sbjct: 1   MPLINLHEGLCPTSSIQYEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVE 60

Query: 61  RARKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 120
           R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR
Sbjct: 61  RPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRR 120

Query: 121 YLPDGSYEDWGVDELIVEDSWKRQVGGA 149
           YLPDGSYEDWGVDELIVEDSWKRQVGGA
Sbjct: 121 YLPDGSYEDWGVDELIVEDSWKRQVGGA 148

[Close]

BLAST of MELO3C006881 vs. ExPASy TrEMBL
Match: A0A1S3AXR1 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo OX=3656 GN=LOC103484050 PE=3 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 3.9e-65
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI
Sbjct: 13  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 72

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV
Sbjct: 73  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132

Query: 138 EDSWKRQVGGA 149
           EDSWKRQVGGA
Sbjct: 133 EDSWKRQVGGA 143

[Close]

BLAST of MELO3C006881 vs. ExPASy TrEMBL
Match: A0A6J1CI61 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3673 GN=LOC111011721 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.2e-63
Identity = 126/131 (96.18%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           YEDEPPEPE+EEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKTSKFMTKYERARI
Sbjct: 13  YEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKTSKFMTKYERARI 72

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV
Sbjct: 73  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132

Query: 138 EDSWKRQVGGA 149
           EDSWKRQVGGA
Sbjct: 133 EDSWKRQVGGA 143

[Close]

BLAST of MELO3C006881 vs. ExPASy TrEMBL
Match: A0A6J1J2R7 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111482872 PE=3 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.1e-62
Identity = 125/131 (95.42%), Postives = 128/131 (97.71%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           Y+DEPPEPE+EEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKTSKFMTKYERARI
Sbjct: 13  YDDEPPEPELEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARI 72

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV
Sbjct: 73  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 132

Query: 138 EDSWKRQVGGA 149
           EDSWKRQVGGA
Sbjct: 133 EDSWKRQVGGA 143

[Close]

BLAST of MELO3C006881 vs. TAIR 10
Match: AT5G51940.1 (RNA polymerase Rpb6 )

HSP 1 Score: 221.9 bits (564), Expect = 3.5e-58
Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           YEDEP EPEIEEG EE+++   NDD+ GEP+EAE+K + EPV+R RKTSKFMTKYERARI
Sbjct: 14  YEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVETEPVQRPRKTSKFMTKYERARI 73

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPDGS+E+WGVDELIV
Sbjct: 74  LGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDGSFEEWGVDELIV 133

Query: 138 EDSWKRQVGG 148
           EDSWKRQVGG
Sbjct: 134 EDSWKRQVGG 143

[Close]

BLAST of MELO3C006881 vs. TAIR 10
Match: AT2G04630.1 (RNA polymerase Rpb6 )

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-55
Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0


Query: 18  YEDEPPEPEIEEGAEEELDNTNNDDITGEPVEAEEKEDEEPVERARKTSKFMTKYERARI 77
           YEDEP EPEIEEG EE+ D   NDD+  +P+E E+K + EPV+R RKTSKFMTKYERARI
Sbjct: 14  YEDEPAEPEIEEGVEEDADIKENDDVNVDPLETEDKVETEPVQRPRKTSKFMTKYERARI 73

Query: 78  LGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIV 137
           LGTRALQISMNAPVMVELEGETDPLEIAMKELR+RKIPFTIRRYLPD SYE+WGVDELIV
Sbjct: 74  LGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLPDMSYEEWGVDELIV 133

Query: 138 EDSWKRQVGG 148
           EDSWKRQVGG
Sbjct: 134 EDSWKRQVGG 143

The following BLAST results are available for this feature:

BLAST of MELO3C006881 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033618.1	4.6e-76	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa]	[more]
TYK22284.1	1.1e-74	97.97	DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa]	[more]
XP_008439178.1	8.1e-65	100.00	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo]	[more]
XP_022141284.1	1.3e-62	96.18	DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia]	[more]
XP_022923151.1	2.2e-62	95.42	DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >...	[more]

BLAST of MELO3C006881 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ98	4.9e-57	84.62	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=...	[more]
Q9SJ96	1.8e-54	83.08	DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702...	[more]
P61219	1.3e-28	63.48	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10...	[more]
O88828	1.3e-28	63.48	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus ...	[more]
P61217	1.7e-28	63.48	DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Cricetulus griseus...	[more]

BLAST of MELO3C006881 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSQ6	2.2e-76	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo var. makuwa...	[more]
A0A5D3DFB9	5.4e-75	97.97	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo var. makuwa...	[more]
A0A1S3AXR1	3.9e-65	100.00	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1CI61	6.2e-63	96.18	DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3...	[more]
A0A6J1J2R7	1.1e-62	95.42	DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX...	[more]

BLAST of MELO3C006881 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51940.1	3.5e-58	84.62	RNA polymerase Rpb6	[more]
AT2G04630.1	1.2e-55	83.08	RNA polymerase Rpb6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006110	RNA polymerase, subunit omega/K/RPB6	SMART	SM01409	RNA_pol_Rpb6_2	coord: 63..116 e-value: 4.7E-6 score: 36.1
IPR006110	RNA polymerase, subunit omega/K/RPB6	PFAM	PF01192	RNA_pol_Rpb6	coord: 65..116 e-value: 6.5E-16 score: 57.9
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	PIRSF	PIRSF000778	RpoK/RPB6	coord: 12..139 e-value: 8.4E-48 score: 159.9
IPR006111	Archaeal RpoK/eukaryotic RPB6 RNA polymerase subunit	HAMAP	MF_00192	RNApol_arch_K	coord: 67..122 score: 18.504309
IPR028363	DNA-directed RNA polymerase, subunit RPB6	PIRSF	PIRSF500154	RPB6	coord: 10..139 e-value: 5.7E-55 score: 183.2
IPR012293	RNA polymerase subunit, RPB6/omega	GENE3D	3.90.940.10		coord: 13..139 e-value: 3.0E-50 score: 171.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66
None	No IPR available	PANTHER	PTHR10773:SF16	DNA-DIRECTED RNA POLYMERASES II AND V SUBUNIT 6B	coord: 16..147
None	No IPR available	PANTHER	PTHR10773	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2	coord: 16..147
IPR020708	DNA-directed RNA polymerase, 14-18kDa subunit, conserved site	PROSITE	PS01111	RNA_POL_K_14KD	coord: 70..84
IPR036161	RPB6/omega subunit-like superfamily	SUPERFAMILY	63562	RPB6/omega subunit-like	coord: 27..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006881.1	MELO3C006881.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity