MELO3C006240.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C006240.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr06: 2399103 .. 2399339 (+)
RNA-Seq Expression	MELO3C006240.jh1
Synteny	MELO3C006240.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAACACTACGCTACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGGGGAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTGTCTGTTTAG

mRNA sequence

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAACACTACGCTACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGGGGAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTGTCTGTTTAG

Coding sequence (CDS)

ATGAGCCGGCTTCTTTCAGAAATACCGCACGCCCCCAATACGAACACTACGCTACGTCGTTTTCAGCCGGTGATGTTGAACGCCGACAACCCACTGACAGAGTACTGCCCGTGGGGGGAATGGGCAGCTGCCCAATCTGCCATTAAAGCCGATCTTGCTTACTTGGATCGCACCATTGTAGAGAAGCATCTGAAAGGGAATTGGATTCTCTACTGTTCTCTGAAACTGTCTGTTTAG

Protein sequence

MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTIVEKHLKGNWILYCSLKLSV

Homology

[Close]

BLAST of MELO3C006240.jh1 vs. NCBI nr
Match: KAA0049083.1 (hypothetical protein E6C27_scaffold171G003120 [Cucumis melo var. makuwa] >TYK17480.1 hypothetical protein E5676_scaffold434G003450 [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (423), Expect = 2.74e-52
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTIV 60
          MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTIV
Sbjct: 1  MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTIV 60

Query: 61 EKHLKGNWILYCSLKLSV 78
          EKHLKGNWILYCSLKLSV
Sbjct: 61 EKHLKGNWILYCSLKLSV 78

[Close]

BLAST of MELO3C006240.jh1 vs. NCBI nr
Match: KAE8650283.1 (hypothetical protein Csa_011158, partial [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 4.53e-14
Identity = 37/59 (62.71%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 1  MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTI 59
          MSRLLSEIPHAPNT      F    +    P     P G+WAAAQSAIKADLAYLDRTI
Sbjct: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTI 59

[Close]

BLAST of MELO3C006240.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D1J1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003450 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 1.33e-52
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTIV 60
          MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTIV
Sbjct: 1  MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTIV 60

Query: 61 EKHLKGNWILYCSLKLSV 78
          EKHLKGNWILYCSLKLSV
Sbjct: 61 EKHLKGNWILYCSLKLSV 78

[Close]

BLAST of MELO3C006240.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L4H2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127160 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.31e-14
Identity = 37/59 (62.71%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 1  MSRLLSEIPHAPNTNTTLRRFQPVMLNADNPLTEYCPWGEWAAAQSAIKADLAYLDRTI 59
          MSRLLSEIPHAPNT      F    +    P     P G+WAAAQSAIKADLAYLDRTI
Sbjct: 1  MSRLLSEIPHAPNTKHYTTSFSAGDVERRQPTDRVLPVGKWAAAQSAIKADLAYLDRTI 59

The following BLAST results are available for this feature:

BLAST of MELO3C006240.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049083.1	2.74e-52	100.00	hypothetical protein E6C27_scaffold171G003120 [Cucumis melo var. makuwa] >TYK174...	[more]
KAE8650283.1	4.53e-14	62.71	hypothetical protein Csa_011158, partial [Cucumis sativus]	[more]

BLAST of MELO3C006240.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C006240.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D1J1	1.33e-52	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0L4H2	3.31e-14	62.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127160 PE=4 SV=1	[more]

BLAST of MELO3C006240.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C006240.jh1.t1	MELO3C006240.jh1.t1	mRNA