MELO3C005460.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C005460.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr09: 21384707 .. 21385633 (-)
RNA-Seq ExpressionMELO3C005460.jh1
SyntenyMELO3C005460.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGTTTGGATAAAATCACAACTGATTGGACAAATAAACGAAGATTCGTAAAAAGAAAATCCAACCGTAAAGCCTTAAATTAGTTATCTAATATTCATTGATCTAAAGTACAGAGACCAAAAACAATAAGGATGAAGAATGACAGCGTTTAAACCTGTATTTCATCAGTTCTTCAACCAGTAATCTGAATGAAATTCTATCAGCGAAGAAAATCGAGAACACAGCTAAAGCACACACAGGTTTGGAAATCAGTTGAAATTCTATGACTATTTTTTCTTTCGATAATTGTTTCACCAAAAGAAAGAAAAAAGAGAATCGAAATGAAAATTTTCATCAGTGAAAAAAAAAATATCAAGAACGCAGTTGAATTAAAAATTGAAAACGAAATTACAGGAAATTGAAATATCATTAGCCAAGAATACGAGACGATGCTTTTTCTCCTTTCGATAATTCCATCATTAAATCCAAAAACAGAAAATCGGAACGAAATTAAAGCGCGTTGGAAAACAGATTGAAATCATCAGAAAACGAAGGACCAGAGCAAGAATAGAAAACAGAATCAGGCCTCAGACAGAGTGTTCTCAGTCATAAAATTATCAGACAATGTAGGCAAATCAAAATATCAATCATCACCGGCCTGATTCAGCAAGAAGAAAGAGAAATGAAAACAAAGAGAAAAGAGAAAAATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGATTGA

mRNA sequence

GAAGTTTGGATAAAATCACAACTGATTGGACAAATAAACGAAGATTCGTAAAAAGAAAATCCAACCGTAAAGCCTTAAATTAGTTATCTAATATTCATTGATCTAAAGTACAGAGACCAAAAACAATAAGGATGAAGAATGACAGCGTTTAAACCTGTATTTCATCAGTTCTTCAACCAGTAATCTGAATGAAATTCTATCAGCGAAGAAAATCGAGAACACAGCTAAAGCACACACAGGTTTGGAAATCAGTTGAAATTCTATGACTATTTTTTCTTTCGATAATTGTTTCACCAAAAGAAAGAAAAAAGAGAATCGAAATGAAAATTTTCATCAGTGAAAAAAAAAATATCAAGAACGCAGTTGAATTAAAAATTGAAAACGAAATTACAGGAAATTGAAATATCATTAGCCAAGAATACGAGACGATGCTTTTTCTCCTTTCGATAATTCCATCATTAAATCCAAAAACAGAAAATCGGAACGAAATTAAAGCGCGTTGGAAAACAGATTGAAATCATCAGAAAACGAAGGACCAGAGCAAGAATAGAAAACAGAATCAGGCCTCAGACAGAGTGTTCTCAGTCATAAAATTATCAGACAATGTAGGCAAATCAAAATATCAATCATCACCGGCCTGATTCAGCAAGAAGAAAGAGAAATGAAAACAAAGAGAAAAGAGAAAAATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGATTGA

Coding sequence (CDS)

ATGGCGAGTGAAGAGATGGCTCAGTTCAGCGGGGTAGTCGACATGCAAAGACGTTTCACTCATTCAAGGAAGAAAGAGGAAATTACTCTGCAATCCGGTCTGTTGAGCTTGAATTTTACTGAGTCGTCACAGCGATCTTCTTCACTCGCAAGAAAATACAAAATCAAAAGCTTACATAAAAAAGAAGAAAAAAAAGTTGAAAGAGGAAACAGCTTCGGCAACGAAGGCGCTGTGTGA

Protein sequence

MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHKKEEKKVERGNSFGNEGAV
Homology
[Close]
BLAST of MELO3C005460.jh1 vs. NCBI nr
Match: KGN50326.1 (hypothetical protein Csa_000200 [Cucumis sativus])

HSP 1 Score: 107 bits (267), Expect = 1.52e-28
Identity = 56/63 (88.89%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHK 60
          MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESS+RS+SLARKYK+KS+ +
Sbjct: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKE 60

Query: 61 KEE 63
          +EE
Sbjct: 61 EEE 63

[Close]
BLAST of MELO3C005460.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KRH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167180 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 7.34e-29
Identity = 56/63 (88.89%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSQRSSSLARKYKIKSLHK 60
          MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESS+RS+SLARKYK+KS+ +
Sbjct: 1  MASEEMAQFSGVVDMQRRFTHSRKKEEITLQSGLLSLNFTESSRRSTSLARKYKMKSIKE 60

Query: 61 KEE 63
          +EE
Sbjct: 61 EEE 63

The following BLAST results are available for this feature:
BLAST of MELO3C005460.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50326.11.52e-2888.89hypothetical protein Csa_000200 [Cucumis sativus][more]
BLAST of MELO3C005460.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C005460.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRH67.34e-2988.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G167180 PE=4 SV=1[more]
BLAST of MELO3C005460.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C005460.jh1.t1MELO3C005460.jh1.t1mRNA