MELO3C002925 (gene) Melon (DHL92) v4

Overview


Name	MELO3C002925
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Cystatin
Location	chr09: 7738752 .. 7739237 (+)
RNA-Seq Expression	MELO3C002925
Synteny	MELO3C002925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGCAAAACCACTTTTACAATAAAATATATATCTCTATCTTGGTATTAGCGATGAGTTCTCCGGATGTTGAACTTCCTTGCGTTGAGCCCCAGGTGCCAATTAAGGATGTTGATAGCGAGGAGATACAAGGATTTGGAAGGTTTGCAGTGAGGAAGCATAATGAAATAAGTACAGGAGAAAATCTGGAGTTTGTGAAGGTGATAAATGGGTTGGAACAAGGACGAAGGGGTTTTCGAATAGTTTACACTCTTGTCTTATCAGCTAAAAACTCATGTGGAATTATTTGGACGTACAAAGCTAAAGTCTTTTTTAATAATCGGGCTGCAGTGCTTCTCTTAGAGTTTGAAGCTGTGCTTCCTGAGAATGGAAACTAAAGCTGGACTGTCATGTACTCTACCCAACAATATGCAAACTTTAACAAAATTAAATGAAATAAATAAAGCAATTATGCTTCATTATCTTTATTAATTTCTAGTCTCTGTC

mRNA sequence

TAAAGCAAAACCACTTTTACAATAAAATATATATCTCTATCTTGGTATTAGCGATGAGTTCTCCGGATGTTGAACTTCCTTGCGTTGAGCCCCAGGTGCCAATTAAGGATGTTGATAGCGAGGAGATACAAGGATTTGGAAGGTTTGCAGTGAGGAAGCATAATGAAATAAGTACAGGAGAAAATCTGGAGTTTGTGAAGGTGATAAATGGGTTGGAACAAGGACGAAGGGGTTTTCGAATAGTTTACACTCTTGTCTTATCAGCTAAAAACTCATGTGGAATTATTTGGACGTACAAAGCTAAAGTCTTTTTTAATAATCGGGCTGCAGTGCTTCTCTTAGAGTTTGAAGCTGTGCTTCCTGAGAATGGAAACTAAAGCTGGACTGTCATGTACTCTACCCAACAATATGCAAACTTTAACAAAATTAAATGAAATAAATAAAGCAATTATGCTTCATTATCTTTATTAATTTCTAGTCTCTGTC

Coding sequence (CDS)

ATGAGTTCTCCGGATGTTGAACTTCCTTGCGTTGAGCCCCAGGTGCCAATTAAGGATGTTGATAGCGAGGAGATACAAGGATTTGGAAGGTTTGCAGTGAGGAAGCATAATGAAATAAGTACAGGAGAAAATCTGGAGTTTGTGAAGGTGATAAATGGGTTGGAACAAGGACGAAGGGGTTTTCGAATAGTTTACACTCTTGTCTTATCAGCTAAAAACTCATGTGGAATTATTTGGACGTACAAAGCTAAAGTCTTTTTTAATAATCGGGCTGCAGTGCTTCTCTTAGAGTTTGAAGCTGTGCTTCCTGAGAATGGAAACTAA

Protein sequence

MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRGFRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN

Homology

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BLAST of MELO3C002925 vs. NCBI nr
Match: KAA0040524.1 (Cystatin [Cucumis melo var. makuwa] >TYK05566.1 Cystatin [Cucumis melo var. makuwa])

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-52
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRG 60
           MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHN+ISTGENLEFVKVINGLEQGRRG
Sbjct: 1   MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNKISTGENLEFVKVINGLEQGRRG 60

Query: 61  FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 108
           FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN
Sbjct: 61  FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 107

[Close]

BLAST of MELO3C002925 vs. NCBI nr
Match: KAE8648508.1 (hypothetical protein Csa_009101, partial [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-37
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRG 60
           MSS D+ +P V+P VPIKDVDSEEI+GFG FAV +HNE +TGENLEFVKVINGLEQGRRG
Sbjct: 18  MSSEDISIPKVDPAVPIKDVDSEEIRGFGEFAVSEHNE-ATGENLEFVKVINGLEQGRRG 77

Query: 61  FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 108
           FRI +TLVLSAKNS GIIWTYK KVF N RA V LLEFEAVL ENGN
Sbjct: 78  FRIDFTLVLSAKNSIGIIWTYKVKVFLNQRAGVRLLEFEAVLNENGN 123

[Close]

BLAST of MELO3C002925 vs. NCBI nr
Match: KGN51193.1 (hypothetical protein Csa_008046 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 7.4e-36
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 15  VPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRGFRIVYTLVLSAKNS 74
           VPIKDVDSEEIQG G  AVR HNE STGENLEFVKVINGLE+GRRGF+IVYTLVLSAKNS
Sbjct: 21  VPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLVLSAKNS 80

Query: 75  CGIIWTYKAKVFFNNRAAVLLLEFEAVLPENG 107
            GI+WTYKAKV FNNRAAV L EFEAVLPENG
Sbjct: 81  LGIVWTYKAKVIFNNRAAVRLPEFEAVLPENG 112

[Close]

BLAST of MELO3C002925 vs. NCBI nr
Match: KAA0040521.1 (Cystatin [Cucumis melo var. makuwa] >TYK05563.1 Cystatin [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 84/107 (78.50%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRG 60
           MSS D  L  ++P VPIKDVDSEEIQG G FAVR+HNE   GENLEFVKVING EQGRRG
Sbjct: 1   MSSED--LSNLDP-VPIKDVDSEEIQGLGEFAVREHNE-EKGENLEFVKVINGFEQGRRG 60

Query: 61  FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 108
            RI++T+VLSAKN  GIIWTYKAKVFFN RAAV LLEFEAVLPENGN
Sbjct: 61  VRIIFTIVLSAKNCNGIIWTYKAKVFFNQRAAVRLLEFEAVLPENGN 103

[Close]

BLAST of MELO3C002925 vs. NCBI nr
Match: KAE8648502.1 (hypothetical protein Csa_008487 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.6e-22
Identity = 58/93 (62.37%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 13  PQVPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRGFRIVYTLVLSAK 72
           P VPIKD+DS EIQG+ RFA  +HNEI TG+ L+F + INGLEQGRR  +I +TLVL A 
Sbjct: 9   PPVPIKDIDSAEIQGYARFATERHNEI-TGDKLQFQRAINGLEQGRRFGQICFTLVLEAI 68

Query: 73  NSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPEN 106
           NS G +WTY A VF+N RAA+ L+EF  VLPE+
Sbjct: 69  NSGGFLWTYTAIVFYNQRAALQLMEFGPVLPEH 100

[Close]

BLAST of MELO3C002925 vs. ExPASy TrEMBL
Match: A0A5D3C5B1 (Cystatin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00040 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.2e-53
Identity = 106/107 (99.07%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRG 60
           MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHN+ISTGENLEFVKVINGLEQGRRG
Sbjct: 1   MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNKISTGENLEFVKVINGLEQGRRG 60

Query: 61  FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 108
           FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN
Sbjct: 61  FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 107

[Close]

BLAST of MELO3C002925 vs. ExPASy TrEMBL
Match: A0A0A0KRZ8 (Cystatin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G487690 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 5.0e-38
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 1   MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRG 60
           MSS D+ +P V+P VPIKDVDSEEI+GFG FAV +HNE +TGENLEFVKVINGLEQGRRG
Sbjct: 1   MSSEDISIPKVDPAVPIKDVDSEEIRGFGEFAVSEHNE-ATGENLEFVKVINGLEQGRRG 60

Query: 61  FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 108
           FRI +TLVLSAKNS GIIWTYK KVF N RA V LLEFEAVL ENGN
Sbjct: 61  FRIDFTLVLSAKNSIGIIWTYKVKVFLNQRAGVRLLEFEAVLNENGN 106

[Close]

BLAST of MELO3C002925 vs. ExPASy TrEMBL
Match: A0A0A0KNL2 (Cystatin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.6e-36
Identity = 80/92 (86.96%), Postives = 83/92 (90.22%), Query Frame = 0


Query: 15  VPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRGFRIVYTLVLSAKNS 74
           VPIKDVDSEEIQG G  AVR HNE STGENLEFVKVINGLE+GRRGF+IVYTLVLSAKNS
Sbjct: 21  VPIKDVDSEEIQGIGGMAVRMHNETSTGENLEFVKVINGLEKGRRGFQIVYTLVLSAKNS 80

Query: 75  CGIIWTYKAKVFFNNRAAVLLLEFEAVLPENG 107
            GI+WTYKAKV FNNRAAV L EFEAVLPENG
Sbjct: 81  LGIVWTYKAKVIFNNRAAVRLPEFEAVLPENG 112

[Close]

BLAST of MELO3C002925 vs. ExPASy TrEMBL
Match: A0A5A7TFU6 (Cystatin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00010 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 84/107 (78.50%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MSSPDVELPCVEPQVPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRG 60
           MSS D  L  ++P VPIKDVDSEEIQG G FAVR+HNE   GENLEFVKVING EQGRRG
Sbjct: 1   MSSED--LSNLDP-VPIKDVDSEEIQGLGEFAVREHNE-EKGENLEFVKVINGFEQGRRG 60

Query: 61  FRIVYTLVLSAKNSCGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 108
            RI++T+VLSAKN  GIIWTYKAKVFFN RAAV LLEFEAVLPENGN
Sbjct: 61  VRIIFTIVLSAKNCNGIIWTYKAKVFFNQRAAVRLLEFEAVLPENGN 103

[Close]

BLAST of MELO3C002925 vs. ExPASy TrEMBL
Match: A0A5D3DF67 (Cystatin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26872G00010 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 52/93 (55.91%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 15  VPIKDVDSEEIQGFGRFAVRKHNEISTGENLEFVKVINGLEQGRRGFRIVYTLVLSAKNS 74
           VP KDVDSEEIQGFG FAVR+HNE   GENLEFVKVING EQGRR               
Sbjct: 12  VPFKDVDSEEIQGFGAFAVREHNE-EKGENLEFVKVINGFEQGRR--------------- 70

Query: 75  CGIIWTYKAKVFFNNRAAVLLLEFEAVLPENGN 108
                             V LLEFEAVLPENGN
Sbjct: 72  ------------------VRLLEFEAVLPENGN 70

The following BLAST results are available for this feature:

BLAST of MELO3C002925 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040524.1	1.5e-52	99.07	Cystatin [Cucumis melo var. makuwa] >TYK05566.1 Cystatin [Cucumis melo var. maku...	[more]
KAE8648508.1	1.0e-37	79.44	hypothetical protein Csa_009101, partial [Cucumis sativus]	[more]
KGN51193.1	7.4e-36	86.96	hypothetical protein Csa_008046 [Cucumis sativus]	[more]
KAA0040521.1	2.4e-34	78.50	Cystatin [Cucumis melo var. makuwa] >TYK05563.1 Cystatin [Cucumis melo var. maku...	[more]
KAE8648502.1	1.6e-22	62.37	hypothetical protein Csa_008487 [Cucumis sativus]	[more]

BLAST of MELO3C002925 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C002925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5B1	7.2e-53	99.07	Cystatin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00040 PE=4 S...	[more]
A0A0A0KRZ8	5.0e-38	79.44	Cystatin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G487690 PE...	[more]
A0A0A0KNL2	3.6e-36	86.96	Cystatin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G487700 PE...	[more]
A0A5A7TFU6	1.2e-34	78.50	Cystatin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00010 PE=4 S...	[more]
A0A5D3DF67	1.1e-13	55.91	Cystatin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26872G00010 PE=...	[more]

BLAST of MELO3C002925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 17..91 e-value: 1.1E-12 score: 48.1
None	No IPR available	GENE3D	3.10.450.10		coord: 14..104 e-value: 1.1E-13 score: 53.1
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 17..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C002925.1	MELO3C002925.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity