MELO3C000081 (gene) Melon (DHL92) v4

Overview


Name	MELO3C000081
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA polymerase I, putative
Location	chr06: 29706592 .. 29707454 (+)
RNA-Seq Expression	MELO3C000081
Synteny	MELO3C000081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGCAATATATCTGGTAAGAATGGACGTGTGCACTGTTCTCTAAATATCAACACAGAAACTGGCCGCCTCTCAGCTCGGAGACCAAATTTGCAGGTTCATAGTTAACTTTTCTCACCATACTTGCATTTGGCACTGAAGAGCTTTGTGATGATTATCTGGAAAAGTTGGTTTGCTTCTTCACTTATATGGTATCACCTCATGGCTACTAGATGCTTAGAGCCTACTGGCTACCATTATCGCAGAGGACTAAATCCCACAACAGGCATGATGTAAAATATTAGGATTATTGCTAACTCTTCTTTGCATCGGTTCTCATTTAGCCTTCTGTGTATGAGTGAATCTTATGTTCATATATTGCTTTTAAACTATGACTTTAATGGGGACTTCAGTTGGCTATATTTTTTGTGCACTAGAATCAACCGGCTCTGGAAAAGGACCGGTATAAGATCCGTCAGGCATTTATAGCTGCTCCTGGAAATTCCCTCATTGTTGCTGATTATGGCCAGGTAATTTTGTTGATGATGAGAAAGGATTTGTATATGTAGTGTGTAATCTAGATTTGCCTCATCTTCCATCGCTTTCTTTTTTGTGATTCTTTGGCTTCAACTATATAATCCTATTTGAAAAGGGAACATTATTGATGGAAATGTAAATCAATTTTGCAGTTGGAACTTAGGATTCTTGCACATCTTGCCAATTGCAAGAGCATGCTGGAAGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGGACCGCAATGAATATGTACCCTCATATTCGAAAAGCTGTTGAAGAAGGAAGTGTGCTTCTTGAGTGGGATCCTCAACCTGGGCAAGACAAACCTCCAGTTCCATTGTTGAAG

mRNA sequence

GGAAGCAATATATCTGGTAAGAATGGACGTGTGCACTGTTCTCTAAATATCAACACAGAAACTGGCCGCCTCTCAGCTCGGAGACCAAATTTGCAGAATCAACCGGCTCTGGAAAAGGACCGGTATAAGATCCGTCAGGCATTTATAGCTGCTCCTGGAAATTCCCTCATTGTTGCTGATTATGGCCAGTTGGAACTTAGGATTCTTGCACATCTTGCCAATTGCAAGAGCATGCTGGAAGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGGACCGCAATGAATATGTACCCTCATATTCGAAAAGCTGTTGAAGAAGGAAGTGTGCTTCTTGAGTGGGATCCTCAACCTGGGCAAGACAAACCTCCAGTTCCATTGTTGAAG

Coding sequence (CDS)

GGAAGCAATATATCTGGTAAGAATGGACGTGTGCACTGTTCTCTAAATATCAACACAGAAACTGGCCGCCTCTCAGCTCGGAGACCAAATTTGCAGAATCAACCGGCTCTGGAAAAGGACCGGTATAAGATCCGTCAGGCATTTATAGCTGCTCCTGGAAATTCCCTCATTGTTGCTGATTATGGCCAGTTGGAACTTAGGATTCTTGCACATCTTGCCAATTGCAAGAGCATGCTGGAAGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGGACCGCAATGAATATGTACCCTCATATTCGAAAAGCTGTTGAAGAAGGAAGTGTGCTTCTTGAGTGGGATCCTCAACCTGGGCAAGACAAACCTCCAGTTCCATTGTTGAAG

Protein sequence

GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQDKPPVPLLK

Homology

[Close]

BLAST of MELO3C000081 vs. NCBI nr
Match: KAA0033948.1 (DNA polymerase I B [Cucumis melo var. makuwa] >TYK02596.1 DNA polymerase I B [Cucumis melo var. makuwa])

HSP 1 Score: 262.3 bits (669), Expect = 2.2e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 815 GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 874

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD
Sbjct: 875 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 934

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 935 KPPVPLLK 942

[Close]

BLAST of MELO3C000081 vs. NCBI nr
Match: XP_038903188.1 (DNA polymerase I B, chloroplastic/mitochondrial-like [Benincasa hispida])

HSP 1 Score: 261.2 bits (666), Expect = 4.8e-66
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 772 GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 831

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPG+D
Sbjct: 832 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGED 891

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 892 KPPVPLLK 899

[Close]

BLAST of MELO3C000081 vs. NCBI nr
Match: KAG6600776.1 (DNA polymerase I A, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 814 GSNISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 873

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVE+GSVLLEWDPQPG+D
Sbjct: 874 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEDGSVLLEWDPQPGED 933

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 934 KPPVPLLK 941

[Close]

BLAST of MELO3C000081 vs. NCBI nr
Match: XP_022976145.1 (DNA polymerase I A, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 815 GSNISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 874

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVE+GSVLLEWDPQPG+D
Sbjct: 875 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEDGSVLLEWDPQPGED 934

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 935 KPPVPLLK 942

[Close]

BLAST of MELO3C000081 vs. NCBI nr
Match: XP_023536872.1 (DNA polymerase I B, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 815 GSNISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 874

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVE+GSVLLEWDPQPG+D
Sbjct: 875 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEDGSVLLEWDPQPGED 934

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 935 KPPVPLLK 942

[Close]

BLAST of MELO3C000081 vs. ExPASy Swiss-Prot
Match: Q84ND9 (DNA polymerase I B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=POLIB PE=2 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 8.9e-63
Identity = 116/128 (90.62%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSN+SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA+PGNSLIVAD
Sbjct: 724 GSNVSGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 783

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLA+C+SM EAF AGGDFHSRTAMNMYPHIR+AVE G VLLEW PQPGQ+
Sbjct: 784 YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 843

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 844 KPPVPLLK 851

[Close]

BLAST of MELO3C000081 vs. ExPASy Swiss-Prot
Match: F4I6M1 (DNA polymerase I A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=POLIA PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.0e-62
Identity = 110/128 (85.94%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSN+SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A+PGN+L+VAD
Sbjct: 740 GSNVSGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVAD 799

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHL  CKSM+EAFKAGGDFHSRTAMNMYPH+R+AVE G V+LEW P+PG+D
Sbjct: 800 YGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGED 859

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 860 KPPVPLLK 867

[Close]

BLAST of MELO3C000081 vs. ExPASy Swiss-Prot
Match: Q6Z4T3 (DNA polymerase I B, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0175600 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.2e-60
Identity = 112/128 (87.50%), Postives = 118/128 (92.19%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           G +IS K GR+HCSLNINTETGRLSAR P+LQNQPALEKDRYKIRQAF+AAPGN+LIVAD
Sbjct: 723 GDHISCKEGRIHCSLNINTETGRLSARTPSLQNQPALEKDRYKIRQAFVAAPGNTLIVAD 782

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHL NCKSMLEAFKAGGDFHSRTAMNMY H+R AVEE  VLLEW PQPGQD
Sbjct: 783 YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 842

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 843 KPPVPLLK 850

[Close]

BLAST of MELO3C000081 vs. ExPASy Swiss-Prot
Match: Q6Z4T5 (DNA polymerase I A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0175300 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.1e-60
Identity = 112/128 (87.50%), Postives = 116/128 (90.62%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           G  IS K GR+HCSLNINTETGRLSAR PNLQNQPALEKDRYKIR AF+AAPGN+LIVAD
Sbjct: 721 GDRISCKEGRIHCSLNINTETGRLSARTPNLQNQPALEKDRYKIRHAFVAAPGNTLIVAD 780

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHL NCKSMLEAFKAGGDFHSRTAMNMY H+R AVEE  VLLEW PQPGQD
Sbjct: 781 YGQLELRILAHLTNCKSMLEAFKAGGDFHSRTAMNMYQHVRDAVEEKKVLLEWHPQPGQD 840

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 841 KPPVPLLK 848

[Close]

BLAST of MELO3C000081 vs. ExPASy Swiss-Prot
Match: Q9S1G2 (DNA polymerase I OS=Rhizobium leguminosarum OX=384 GN=polA PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.6e-17
Identity = 45/89 (50.56%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 10  RVHCSLNI-NTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRI 69
           RVH S ++ +T TGRLS+  PNLQN P    +  KIR AFI+ PG+ LI ADY Q+ELR+
Sbjct: 736 RVHTSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLISADYSQIELRV 795

Query: 70  LAHLANCKSMLEAFKAGGDFHSRTAMNMY 98
           LAH+A    + +AF+ G D H+ TA  M+
Sbjct: 796 LAHVAEIPQLTKAFEDGVDIHAMTASEMF 824

[Close]

BLAST of MELO3C000081 vs. ExPASy TrEMBL
Match: A0A5A7STI8 (DNA polymerase I B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00520 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.1e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 815 GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 874

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD
Sbjct: 875 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 934

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 935 KPPVPLLK 942

[Close]

BLAST of MELO3C000081 vs. ExPASy TrEMBL
Match: A0A6J1IIP1 (DNA polymerase I A, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476616 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 6.8e-66
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 815 GSNISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 874

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVE+GSVLLEWDPQPG+D
Sbjct: 875 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEDGSVLLEWDPQPGED 934

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 935 KPPVPLLK 942

[Close]

BLAST of MELO3C000081 vs. ExPASy TrEMBL
Match: A0A0A0L6C2 (POLAc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078000 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 6.8e-66
Identity = 126/128 (98.44%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 699 GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 758

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHI+KAVEEGSVLLEWDPQPGQ+
Sbjct: 759 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIKKAVEEGSVLLEWDPQPGQE 818

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 819 KPPVPLLK 826

[Close]

BLAST of MELO3C000081 vs. ExPASy TrEMBL
Match: A0A6J1FW48 (DNA polymerase I B, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111447420 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 6.8e-66
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGR+HCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 815 GSNISGKNGRIHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 874

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVE+GSVLLEWDPQPG+D
Sbjct: 875 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEDGSVLLEWDPQPGED 934

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 935 KPPVPLLK 942

[Close]

BLAST of MELO3C000081 vs. ExPASy TrEMBL
Match: A0A6J1D9Z5 (DNA polymerase I A, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111019012 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.6e-65
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD
Sbjct: 820 GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 879

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIR AVE+GSVLLEWDPQPG+D
Sbjct: 880 YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRNAVEKGSVLLEWDPQPGED 939

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 940 KPPVPLLK 947

[Close]

BLAST of MELO3C000081 vs. TAIR 10
Match: AT3G20540.1 (polymerase gamma 1 )

HSP 1 Score: 240.7 bits (613), Expect = 6.3e-64
Identity = 116/128 (90.62%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSN+SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA+PGNSLIVAD
Sbjct: 724 GSNVSGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 783

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLA+C+SM EAF AGGDFHSRTAMNMYPHIR+AVE G VLLEW PQPGQ+
Sbjct: 784 YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 843

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 844 KPPVPLLK 851

[Close]

BLAST of MELO3C000081 vs. TAIR 10
Match: AT3G20540.2 (polymerase gamma 1 )

HSP 1 Score: 240.7 bits (613), Expect = 6.3e-64
Identity = 116/128 (90.62%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSN+SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIA+PGNSLIVAD
Sbjct: 739 GSNVSGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIASPGNSLIVAD 798

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHLA+C+SM EAF AGGDFHSRTAMNMYPHIR+AVE G VLLEW PQPGQ+
Sbjct: 799 YGQLELRILAHLASCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQE 858

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 859 KPPVPLLK 866

[Close]

BLAST of MELO3C000081 vs. TAIR 10
Match: AT1G50840.1 (polymerase gamma 2 )

HSP 1 Score: 239.6 bits (610), Expect = 1.4e-63
Identity = 110/128 (85.94%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   GSNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVAD 60
           GSN+SGK+GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIR+AF+A+PGN+L+VAD
Sbjct: 740 GSNVSGKDGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRKAFVASPGNTLVVAD 799

Query: 61  YGQLELRILAHLANCKSMLEAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGQD 120
           YGQLELRILAHL  CKSM+EAFKAGGDFHSRTAMNMYPH+R+AVE G V+LEW P+PG+D
Sbjct: 800 YGQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGED 859

Query: 121 KPPVPLLK 129
           KPPVPLLK
Sbjct: 860 KPPVPLLK 867

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BLAST of MELO3C000081 vs. TAIR 10
Match: AT4G32700.2 (helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding )

HSP 1 Score: 45.8 bits (107), Expect = 3.0e-05
Identity = 30/82 (36.59%), Postives = 42/82 (51.22%), Query Frame = 0


Query: 15   LNINTETGRLSARRPNLQN--------------QPALEKDRYKI--RQAFIAAPGN-SLI 74
            L  +T TGRLS   PNLQ+                + + DRYKI  R  F+    N  L+
Sbjct: 1846 LQTSTATGRLSIEEPNLQSVEHEVEFKLDKNGRDVSSDADRYKINARDFFVPTQENWLLL 1905

Query: 75   VADYGQLELRILAHLANCKSML 80
             ADY Q+ELR++AH +   S++
Sbjct: 1906 TADYSQIELRLMAHFSRDSSLI 1927

The following BLAST results are available for this feature:

BLAST of MELO3C000081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033948.1	2.2e-66	100.00	DNA polymerase I B [Cucumis melo var. makuwa] >TYK02596.1 DNA polymerase I B [Cu...	[more]
XP_038903188.1	4.8e-66	99.22	DNA polymerase I B, chloroplastic/mitochondrial-like [Benincasa hispida]	[more]
KAG6600776.1	1.4e-65	97.66	DNA polymerase I A, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma...	[more]
XP_022976145.1	1.4e-65	97.66	DNA polymerase I A, chloroplastic/mitochondrial-like [Cucurbita maxima]	[more]
XP_023536872.1	1.4e-65	97.66	DNA polymerase I B, chloroplastic/mitochondrial-like [Cucurbita pepo subsp. pepo...	[more]

BLAST of MELO3C000081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84ND9	8.9e-63	90.63	DNA polymerase I B, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 ...	[more]
F4I6M1	2.0e-62	85.94	DNA polymerase I A, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 ...	[more]
Q6Z4T3	3.2e-60	87.50	DNA polymerase I B, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
Q6Z4T5	4.1e-60	87.50	DNA polymerase I A, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os...	[more]
Q9S1G2	5.6e-17	50.56	DNA polymerase I OS=Rhizobium leguminosarum OX=384 GN=polA PE=3 SV=1	[more]

BLAST of MELO3C000081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STI8	1.1e-66	100.00	DNA polymerase I B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G0...	[more]
A0A6J1IIP1	6.8e-66	97.66	DNA polymerase I A, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661...	[more]
A0A0A0L6C2	6.8e-66	98.44	POLAc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078000 PE=3 ...	[more]
A0A6J1FW48	6.8e-66	97.66	DNA polymerase I B, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=36...	[more]
A0A6J1D9Z5	2.6e-65	97.66	DNA polymerase I A, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 G...	[more]

BLAST of MELO3C000081 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20540.1	6.3e-64	90.63	polymerase gamma 1	[more]
AT3G20540.2	6.3e-64	90.63	polymerase gamma 1	[more]
AT1G50840.1	1.4e-63	85.94	polymerase gamma 2	[more]
AT4G32700.2	3.0e-05	36.59	helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002298	DNA polymerase A	PRINTS	PR00868	DNAPOLI	coord: 85..98 score: 36.54 coord: 55..78 score: 47.44 coord: 33..48 score: 40.87 coord: 10..32 score: 42.64
IPR002298	DNA polymerase A	PANTHER	PTHR10133	DNA POLYMERASE I	coord: 2..127
IPR001098	DNA-directed DNA polymerase, family A, palm domain	PFAM	PF00476	DNA_pol_A	coord: 7..99 e-value: 1.4E-27 score: 96.7
None	No IPR available	GENE3D	3.30.70.370		coord: 16..111 e-value: 1.2E-19 score: 72.3
None	No IPR available	PANTHER	PTHR10133:SF55	DNA POLYMERASE I B, MITOCHONDRIAL	coord: 2..127
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 4..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C000081.1	MELO3C000081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006260	DNA replication
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity