Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTGAGGAAGCCAAGTGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCAAAAAATGGCGATTTCCGTGGCCTTAGGAAGTACCTCAAGACCGTTATGATATATGGATATGTAACTGAGCCATATGTATTGGAGCTTATTGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTCCGATCAGGAGGATCGATTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCCTCCAAGTCTGCT
mRNA sequence
ACTGAGGAAGCCAAGTGGATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCAAAAAATGGCGATTTCCGTGGCCTTAGGAAGTACCTCAAGACCGTTATGATATATGGATATGTAACTGAGCCATATGTATTGGAGCTTATTGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTCCGATCAGGAGGATCGATTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCCTCCAAGTCTGCT
Coding sequence (CDS)
ATGGAGGCTTATGATTTTGATGGTAAGGATTACTGGAAGTCAAAAAATGGCGATTTCCGTGGCCTTAGGAAGTACCTCAAGACCGTTATGATATATGGATATGTAACTGAGCCATATGTATTGGAGCTTATTGAATTTCTATTGAAGAATGCCTTGGTCCTGGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTTTCCGATCAGGAGGATCGATTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTCTTCCAAGGGCCTCCAAGTCTGCT
Protein sequence
MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVISTKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Homology
BLAST of MELO3C000031 vs. NCBI nr
Match:
KAA0054510.1 (F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa] >TYJ98285.1 F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa])
HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS
Sbjct: 388 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 447
Query: 61 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 448 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 494
BLAST of MELO3C000031 vs. NCBI nr
Match:
XP_016903698.1 (PREDICTED: uncharacterized protein LOC107992372 [Cucumis melo])
HSP 1 Score: 213.0 bits (541), Expect = 1.3e-51
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS
Sbjct: 38 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 97
Query: 61 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 98 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 144
BLAST of MELO3C000031 vs. NCBI nr
Match:
XP_038902589.1 (uncharacterized protein LOC120089239 [Benincasa hispida])
HSP 1 Score: 200.3 bits (508), Expect = 8.5e-48
Identity = 102/107 (95.33%), Postives = 103/107 (96.26%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
MEAYDFDGKDYWKS GDFR LRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEK+VIS
Sbjct: 142 MEAYDFDGKDYWKSPYGDFRCLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKVVIS 201
Query: 61 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
TKRTLQPIHQYELFKDAV DQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 202 TKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTLPRASKSA 248
BLAST of MELO3C000031 vs. NCBI nr
Match:
XP_004143230.1 (putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus] >KGN47014.1 hypothetical protein Csa_020781 [Cucumis sativus])
HSP 1 Score: 197.2 bits (500), Expect = 7.2e-47
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFR-GLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVI 60
MEAYDFDGK YWKS+NGDFR GLRKYLKTV IYGYVTEPYVLELIEFLLKNALVLEKMVI
Sbjct: 400 MEAYDFDGKSYWKSQNGDFRGGLRKYLKTVKIYGYVTEPYVLELIEFLLKNALVLEKMVI 459
Query: 61 STKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
STK+TLQPIHQYELFKDAV DQEDRFTP+ELLQFSQKLLTLPRASKSA
Sbjct: 460 STKKTLQPIHQYELFKDAVFDQEDRFTPKELLQFSQKLLTLPRASKSA 507
BLAST of MELO3C000031 vs. NCBI nr
Match:
KAA8524482.1 (hypothetical protein F0562_010905 [Nyssa sinensis])
HSP 1 Score: 127.5 bits (319), Expect = 7.0e-26
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
++AYDFD +YW S+ +F L +LKT+MIYGY+TEPYV+EL+EFLLK A VLEKMV S
Sbjct: 397 IQAYDFDDVNYWNSQEANFTCLTHHLKTIMIYGYITEPYVIELVEFLLKRATVLEKMVFS 456
Query: 61 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
T +TLQP H Y F AV Q+ FT E+LL SQ+LL++PRAS A
Sbjct: 457 TSKTLQPEHPYYFFAAAVDRQKHHFTSEKLLAISQRLLSIPRASTRA 503
BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match:
A0A5A7UGX2 (F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00310 PE=4 SV=1)
HSP 1 Score: 213.0 bits (541), Expect = 6.1e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS
Sbjct: 388 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 447
Query: 61 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 448 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 494
BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match:
A0A1S4E641 (uncharacterized protein LOC107992372 OS=Cucumis melo OX=3656 GN=LOC107992372 PE=4 SV=1)
HSP 1 Score: 213.0 bits (541), Expect = 6.1e-52
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS
Sbjct: 38 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 97
Query: 61 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA
Sbjct: 98 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 144
BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match:
A0A0A0KDY5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G169300 PE=4 SV=1)
HSP 1 Score: 197.2 bits (500), Expect = 3.5e-47
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFR-GLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVI 60
MEAYDFDGK YWKS+NGDFR GLRKYLKTV IYGYVTEPYVLELIEFLLKNALVLEKMVI
Sbjct: 400 MEAYDFDGKSYWKSQNGDFRGGLRKYLKTVKIYGYVTEPYVLELIEFLLKNALVLEKMVI 459
Query: 61 STKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
STK+TLQPIHQYELFKDAV DQEDRFTP+ELLQFSQKLLTLPRASKSA
Sbjct: 460 STKKTLQPIHQYELFKDAVFDQEDRFTPKELLQFSQKLLTLPRASKSA 507
BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match:
A0A5J5A3U5 (FBD domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010905 PE=4 SV=1)
HSP 1 Score: 127.5 bits (319), Expect = 3.4e-26
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 0
Query: 1 MEAYDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVIS 60
++AYDFD +YW S+ +F L +LKT+MIYGY+TEPYV+EL+EFLLK A VLEKMV S
Sbjct: 397 IQAYDFDDVNYWNSQEANFTCLTHHLKTIMIYGYITEPYVIELVEFLLKRATVLEKMVFS 456
Query: 61 TKRTLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
T +TLQP H Y F AV Q+ FT E+LL SQ+LL++PRAS A
Sbjct: 457 TSKTLQPEHPYYFFAAAVDRQKHHFTSEKLLAISQRLLSIPRASTRA 503
BLAST of MELO3C000031 vs. ExPASy TrEMBL
Match:
A0A1R3H5K0 (FBD domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21467 PE=4 SV=1)
HSP 1 Score: 105.5 bits (262), Expect = 1.4e-19
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 0
Query: 4 YDFDGKDYWKSKNGDFRGLRKYLKTVMIYGYVTEPYVLELIEFLLKNALVLEKMVISTKR 63
YDFDG ++W+ + G F L K LKT+ IYGY+TEPYV++ +EFLLKNA VLEK+ ISTK+
Sbjct: 406 YDFDGGNFWRLQEGTFHCLEKQLKTIKIYGYITEPYVIDTVEFLLKNATVLEKLEISTKK 465
Query: 64 TLQPIHQYELFKDAVSDQEDRFTPEELLQFSQKLLTLPRASKSA 108
TL+ HQ S Q+ + E+ L+FSQKL +LPRAS A
Sbjct: 466 TLKHSHQAN-----SSCQKVELSAEQRLEFSQKLSSLPRASPRA 504
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0054510.1 | 1.3e-51 | 100.00 | F-box/FBD/LRR-repeat protein [Cucumis melo var. makuwa] >TYJ98285.1 F-box/FBD/LR... | [more] |
| XP_016903698.1 | 1.3e-51 | 100.00 | PREDICTED: uncharacterized protein LOC107992372 [Cucumis melo] | [more] |
| XP_038902589.1 | 8.5e-48 | 95.33 | uncharacterized protein LOC120089239 [Benincasa hispida] | [more] |
| XP_004143230.1 | 7.2e-47 | 93.52 | putative F-box/LRR-repeat protein At3g18150 [Cucumis sativus] >KGN47014.1 hypoth... | [more] |
| KAA8524482.1 | 7.0e-26 | 58.88 | hypothetical protein F0562_010905 [Nyssa sinensis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UGX2 | 6.1e-52 | 100.00 | F-box/FBD/LRR-repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
| A0A1S4E641 | 6.1e-52 | 100.00 | uncharacterized protein LOC107992372 OS=Cucumis melo OX=3656 GN=LOC107992372 PE=... | [more] |
| A0A0A0KDY5 | 3.5e-47 | 93.52 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G169300 PE=4 ... | [more] |
| A0A5J5A3U5 | 3.4e-26 | 58.88 | FBD domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010905 PE=4 S... | [more] |
| A0A1R3H5K0 | 1.4e-19 | 53.85 | FBD domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_21467... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
