MELO.jh033619.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh033619.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionUnknown protein
Locationchr07: 4054019 .. 4054412 (-)
RNA-Seq ExpressionMELO.jh033619.1
SyntenyMELO.jh033619.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAAAGTATTTCTTCTTCTTTTGCTTGGTTATTGTAATAATTTTGCTGCCATTTTTGGGCTTTGAATCACCTCGTCCTCCTCCTCCTCCTTCTCCAAGTGGCTTCATGGAAAGTTCTAAAGATGCATTAATGGCGAGTCTCCAAAGACAAGGTGGAAAGCCCTTTAAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTGACGATCGGGGTGAAACCTAATGTTATCATGAACTACGATGATAATAGAATTAAATTATATATACAAAATATTCCTAAACTTTATAGTAGAGTTTGGGTTTCTTAATTATGTTTTTGCATTTTGAAAAGTTTTCGTTTTGAACTACTTTTTATCTTCTGTCAAAATAAAAAAAATTCATCTA

mRNA sequence

GATAAAGTATTTCTTCTTCTTTTGCTTGGTTATTGTAATAATTTTGCTGCCATTTTTGGGCTTTGAATCACCTCGTCCTCCTCCTCCTCCTTCTCCAAGTGGCTTCATGGAAAGTTCTAAAGATGCATTAATGGCGAGTCTCCAAAGACAAGGTGGAAAGCCCTTTAAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTGACGATCGGGGTGAAACCTAATGTTATCATGAACTACGATGATAATAGAATTAAATTATATATACAAAATATTCCTAAACTTTATAGTAGAGTTTGGGTTTCTTAATTATGTTTTTGCATTTTGAAAAGTTTTCGTTTTGAACTACTTTTTATCTTCTGTCAAAATAAAAAAAATTCATCTA

Coding sequence (CDS)

ATGGAAAGTTCTAAAGATGCATTAATGGCGAGTCTCCAAAGACAAGGTGGAAAGCCCTTTAAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTGA

Protein sequence

MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH
Homology
BLAST of MELO.jh033619.1 vs. NCBI nr
Match: KGN55082.1 (hypothetical protein Csa_012608 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.32e-14
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
          MES+KDALMASLQR+GGKPF+VQRTSPGGPDQHHH
Sbjct: 47 MESAKDALMASLQRRGGKPFQVQRTSPGGPDQHHH 81

BLAST of MELO.jh033619.1 vs. NCBI nr
Match: KAG6607905.1 (hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 2.05e-09
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 1  MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
          MES+++ALMASL RQG + F+VQR++PGGPDQHHH
Sbjct: 34 MESAREALMASLHRQGERRFQVQRSTPGGPDQHHH 68

BLAST of MELO.jh033619.1 vs. NCBI nr
Match: KAE8703294.1 (putative Mitochondrial transcription termination factor family protein [Hibiscus syriacus])

HSP 1 Score: 52.4 bits (124), Expect = 4.88e-07
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1   MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
           +E  ++A+ AS+QR GG+PF+ +RTSPGGPD HHH
Sbjct: 92  VEEGREAIKASIQRNGGEPFESKRTSPGGPDPHHH 126

BLAST of MELO.jh033619.1 vs. NCBI nr
Match: XP_007021658.1 (PREDICTED: uncharacterized protein LOC18594131 [Theobroma cacao] >EOY13183.1 Uncharacterized protein TCM_031710 [Theobroma cacao])

HSP 1 Score: 49.7 bits (117), Expect = 7.00e-06
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 1   MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
           +E +++A+ AS+QR GG PF+ +R SPGGPD HHH
Sbjct: 107 IEEAREAIKASVQRNGGNPFESKRLSPGGPDPHHH 141

BLAST of MELO.jh033619.1 vs. NCBI nr
Match: XP_021288729.1 (uncharacterized protein LOC110419919 [Herrania umbratica])

HSP 1 Score: 49.7 bits (117), Expect = 7.00e-06
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 1   MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
           +E +++A+ AS+QR GG PF+ +R SPGGPD HHH
Sbjct: 107 IEEAREAIKASVQRHGGNPFESKRLSPGGPDPHHH 141

BLAST of MELO.jh033619.1 vs. ExPASy TrEMBL
Match: A0A0A0L3B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627810 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.38e-15
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0

Query: 1  MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
          MES+KDALMASLQR+GGKPF+VQRTSPGGPDQHHH
Sbjct: 47 MESAKDALMASLQRRGGKPFQVQRTSPGGPDQHHH 81

BLAST of MELO.jh033619.1 vs. ExPASy TrEMBL
Match: A0A6A3AFG2 (Putative Mitochondrial transcription termination factor family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110472pilonHSYRG00254 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 2.36e-07
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 0

Query: 1   MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
           +E  ++A+ AS+QR GG+PF+ +RTSPGGPD HHH
Sbjct: 92  VEEGREAIKASIQRNGGEPFESKRTSPGGPDPHHH 126

BLAST of MELO.jh033619.1 vs. ExPASy TrEMBL
Match: A0A6J1AQE4 (uncharacterized protein LOC110419919 OS=Herrania umbratica OX=108875 GN=LOC110419919 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.39e-06
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 1   MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
           +E +++A+ AS+QR GG PF+ +R SPGGPD HHH
Sbjct: 107 IEEAREAIKASVQRHGGNPFESKRLSPGGPDPHHH 141

BLAST of MELO.jh033619.1 vs. ExPASy TrEMBL
Match: A0A061F8J8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_031710 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.39e-06
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 0

Query: 1   MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
           +E +++A+ AS+QR GG PF+ +R SPGGPD HHH
Sbjct: 107 IEEAREAIKASVQRNGGNPFESKRLSPGGPDPHHH 141

BLAST of MELO.jh033619.1 vs. ExPASy TrEMBL
Match: A0A540KDP1 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_042222 PE=4 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 4.92e-06
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 0

Query: 1  MESSKDALMASLQRQGGKPFKVQRTSPGGPDQHHH 35
          MES+K  L AS +RQ GKPF+ +R SPGGPD  HH
Sbjct: 38 MESAKQVLKASSERQVGKPFESKRVSPGGPDPRHH 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55082.11.32e-1491.43hypothetical protein Csa_012608 [Cucumis sativus][more]
KAG6607905.12.05e-0971.43hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8703294.14.88e-0760.00putative Mitochondrial transcription termination factor family protein [Hibiscus... [more]
XP_007021658.17.00e-0657.14PREDICTED: uncharacterized protein LOC18594131 [Theobroma cacao] >EOY13183.1 Unc... [more]
XP_021288729.17.00e-0657.14uncharacterized protein LOC110419919 [Herrania umbratica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3B36.38e-1591.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627810 PE=4 SV=1[more]
A0A6A3AFG22.36e-0760.00Putative Mitochondrial transcription termination factor family protein OS=Hibisc... [more]
A0A6J1AQE43.39e-0657.14uncharacterized protein LOC110419919 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
A0A061F8J83.39e-0657.14Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_031710 PE=4 SV=1[more]
A0A540KDP14.92e-0662.86Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_042222 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh033619.1.t1MELO.jh033619.1.t1mRNA