MELO.jh030983.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh030983.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Condensin complex subunit 1
Location	chr05: 13639477 .. 13639670 (-)
RNA-Seq Expression	MELO.jh030983.1
Synteny	MELO.jh030983.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGCACCATCAGATATTGTTCGTTCCAATTGTACTATTGCTTTAGGAGATTTGGCAGTTTGTTTCCCTAATCTCTTGGAGCCATGGACCGAGAATATGTATACAAGGTTGAAGGATCCTTCAAATTCTGTTAGGAAGAATGTTGTATTGGAGCTATCTCATCTCATTTTCAACGATATTATGAAGGCTTGA

mRNA sequence

AAATTGCACCATCAGATATTGTTCGTTCCAATTGTACTATTGCTTTAGGAGATTTGGCAGTTTGTTTCCCTAATCTCTTGGAGCCATGGACCGAGAATATGTATACAAGGTTGAAGGATCCTTCAAATTCTGTTAGGAAGAATGTTGTATTGGAGCTATCTCATCTCATTTTCAACGATATTATGAAGGCTTGA

Coding sequence (CDS)

ATGTATACAAGGTTGAAGGATCCTTCAAATTCTGTTAGGAAGAATGTTGTATTGGAGCTATCTCATCTCATTTTCAACGATATTATGAAGGCTTGA

Protein sequence

MYTRLKDPSNSVRKNVVLELSHLIFNDIMKA

Homology

[Close]

BLAST of MELO.jh030983.1 vs. NCBI nr
Match: KAA0032300.1 (condensin complex subunit 1 [Cucumis melo var. makuwa] >TYK13518.1 condensin complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.47e-11
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   MYTRLKDPSNSVRKNVVLELSHLIFNDIMKA 31
           MYTRLKDPSNSVRKNVVLELSHLIFNDIMKA
Sbjct: 103 MYTRLKDPSNSVRKNVVLELSHLIFNDIMKA 133

[Close]

BLAST of MELO.jh030983.1 vs. NCBI nr
Match: KAG6580892.1 (Condensin complex subunit 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.8 bits (125), Expect = 1.43e-06
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 30
            MY RLKDPSNSVRKN VL LSHLI ND+MK
Sbjct: 1013 MYARLKDPSNSVRKNAVLVLSHLILNDMMK 1042

[Close]

BLAST of MELO.jh030983.1 vs. NCBI nr
Match: XP_004136646.1 (condensin complex subunit 1 [Cucumis sativus] >KGN59461.1 hypothetical protein Csa_001936 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 1.43e-06
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 30
            MY RLKDPSNSVRKN VL LSHLI ND+MK
Sbjct: 1013 MYVRLKDPSNSVRKNAVLVLSHLILNDMMK 1042

[Close]

BLAST of MELO.jh030983.1 vs. NCBI nr
Match: XP_038904683.1 (condensin complex subunit 1 [Benincasa hispida] >XP_038904685.1 condensin complex subunit 1 [Benincasa hispida])

HSP 1 Score: 52.8 bits (125), Expect = 1.43e-06
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 30
            MY RLKDPSNSVRKN VL LSHLI ND+MK
Sbjct: 1013 MYARLKDPSNSVRKNAVLVLSHLILNDMMK 1042

[Close]

BLAST of MELO.jh030983.1 vs. NCBI nr
Match: KAG7017649.1 (Condensin complex subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 52.8 bits (125), Expect = 1.43e-06
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1   MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 30
           MY RLKDPSNSVRKN VL LSHLI ND+MK
Sbjct: 943 MYARLKDPSNSVRKNAVLVLSHLILNDMMK 972

[Close]

BLAST of MELO.jh030983.1 vs. ExPASy TrEMBL
Match: A0A5D3CQP7 (Condensin complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G00140 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.10e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1   MYTRLKDPSNSVRKNVVLELSHLIFNDIMKA 31
           MYTRLKDPSNSVRKNVVLELSHLIFNDIMKA
Sbjct: 103 MYTRLKDPSNSVRKNVVLELSHLIFNDIMKA 133

[Close]

BLAST of MELO.jh030983.1 vs. ExPASy TrEMBL
Match: A0A0A0LHG7 (Condensin complex subunit 1 OS=Cucumis sativus OX=3659 GN=Csa_3G822130 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.91e-07
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 30
            MY RLKDPSNSVRKN VL LSHLI ND+MK
Sbjct: 1013 MYVRLKDPSNSVRKNAVLVLSHLILNDMMK 1042

[Close]

BLAST of MELO.jh030983.1 vs. ExPASy TrEMBL
Match: A0A6J1J8F1 (Condensin complex subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111482227 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.29e-06
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 30
            MY RLKDPSNSVRKN VL LSHLI ND+MK
Sbjct: 1012 MYGRLKDPSNSVRKNAVLVLSHLILNDMMK 1041

[Close]

BLAST of MELO.jh030983.1 vs. ExPASy TrEMBL
Match: A0A6J1F3J1 (Condensin complex subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111442053 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.29e-06
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 30
            MY RLKDPSNSVRKN VL LSHLI ND+MK
Sbjct: 1012 MYGRLKDPSNSVRKNAVLVLSHLILNDMMK 1041

[Close]

BLAST of MELO.jh030983.1 vs. ExPASy TrEMBL
Match: A0A6J1DXI0 (Condensin complex subunit 1 OS=Momordica charantia OX=3673 GN=LOC111025009 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 4.52e-06
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 30
            MY RLKDPS SVRKN VL LSHLI ND+MK
Sbjct: 1014 MYARLKDPSKSVRKNAVLVLSHLILNDMMK 1043

[Close]

BLAST of MELO.jh030983.1 vs. TAIR 10
Match: AT3G57060.1 (binding )

HSP 1 Score: 45.4 bits (106), Expect = 9.4e-06
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 31
            MY RL+D S SVRKN VL LSHLI ND+MK
Sbjct: 1009 MYARLRDASVSVRKNAVLVLSHLILNDMMK 1038

[Close]

BLAST of MELO.jh030983.1 vs. TAIR 10
Match: AT3G57060.2 (binding )

HSP 1 Score: 45.4 bits (106), Expect = 9.4e-06
Identity = 22/30 (73.33%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 1    MYTRLKDPSNSVRKNVVLELSHLIFNDIMK 31
            MY RL+D S SVRKN VL LSHLI ND+MK
Sbjct: 1009 MYARLRDASVSVRKNAVLVLSHLILNDMMK 1038

The following BLAST results are available for this feature:

BLAST of MELO.jh030983.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032300.1	1.47e-11	100.00	condensin complex subunit 1 [Cucumis melo var. makuwa] >TYK13518.1 condensin com...	[more]
KAG6580892.1	1.43e-06	83.33	Condensin complex subunit 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004136646.1	1.43e-06	83.33	condensin complex subunit 1 [Cucumis sativus] >KGN59461.1 hypothetical protein C...	[more]
XP_038904683.1	1.43e-06	83.33	condensin complex subunit 1 [Benincasa hispida] >XP_038904685.1 condensin comple...	[more]
KAG7017649.1	1.43e-06	83.33	Condensin complex subunit 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MELO.jh030983.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh030983.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CQP7	7.10e-12	100.00	Condensin complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A0A0LHG7	6.91e-07	83.33	Condensin complex subunit 1 OS=Cucumis sativus OX=3659 GN=Csa_3G822130 PE=3 SV=1	[more]
A0A6J1J8F1	1.29e-06	83.33	Condensin complex subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111482227 PE=3 SV=...	[more]
A0A6J1F3J1	1.29e-06	83.33	Condensin complex subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111442053 PE=3 S...	[more]
A0A6J1DXI0	4.52e-06	80.00	Condensin complex subunit 1 OS=Momordica charantia OX=3673 GN=LOC111025009 PE=3 ...	[more]

BLAST of MELO.jh030983.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57060.1	9.4e-06	73.33	binding	[more]
AT3G57060.2	9.4e-06	73.33	binding	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh030983.1.t1	MELO.jh030983.1.t1	mRNA