MELO.jh028206.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh028206.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr11: 30589059 .. 30589678 (+)
RNA-Seq Expression	MELO.jh028206.1
Synteny	MELO.jh028206.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCAATCAAAAACAAATTCCTTTTGTTTCTTAATCTTCGAAAGTTATGGGTAGGAGAGAGAGAGAAATTAGAGATACTGATGCTAACCTGGCGATGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGAAGGGTAGAAGGGTGGCGGCAACGAGAGGCCAGCTCAGCATCAGCCACCGCGTAAGGTGGATCAACCACCTTTGAAGACGAAAGAGAAACAGGCCGGGGCGGTGGTGACTTCCGATCAGTTGGCCAAAACCCGCGGCGGGATCGTGATAACAACTTGGCGTTCTTATGCAAAACGGAAATAGCTTTCGTTTTTCTCTACATAACTAGTGGATGGATGCTCATAATATATAAAGAAATATAGATACTTAACTACAAGCCTGCAGTATAGAAATAAATAGAGATATGGGATATATATATATATATATAGATATAGATAGATAGATATGAAGTATGTGTATGGGGTACTTAGCTATAGCTTGGTTATGTTGTTTTTCTTGGGCTCTTTAGTAATATCAAAAAGTATGCATGTTTTGAGTTAAGTTGAGTGAGTTGCATGTCACACCTCTTCATCTTAATTCAATTTCACCTAAAA

mRNA sequence

AGCCAATCAAAAACAAATTCCTTTTGTTTCTTAATCTTCGAAAGTTATGGGTAGGAGAGAGAGAGAAATTAGAGATACTGATGCTAACCTGGCGATGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGAAGGGTAGAAGGGTGGCGGCAACGAGAGGCCAGCTCAGCATCAGCCACCGCGTAAGGTGGATCAACCACCTTTGAAGACGAAAGAGAAACAGGCCGGGGCGGTGGTGACTTCCGATCAGTTGGCCAAAACCCGCGGCGGGATCGTGATAACAACTTGGCGTTCTTATGCAAAACGGAAATAGCTTTCGTTTTTCTCTACATAACTAGTGGATGGATGCTCATAATATATAAAGAAATATAGATACTTAACTACAAGCCTGCAGTATAGAAATAAATAGAGATATGGGATATATATATATATATATAGATATAGATAGATAGATATGAAGTATGTGTATGGGGTACTTAGCTATAGCTTGGTTATGTTGTTTTTCTTGGGCTCTTTAGTAATATCAAAAAGTATGCATGTTTTGAGTTAAGTTGAGTGAGTTGCATGTCACACCTCTTCATCTTAATTCAATTTCACCTAAAA

Coding sequence (CDS)

ATGGGTAGGAGAGAGAGAGAAATTAGAGATACTGATGCTAACCTGGCGATGATTGGGATTGAAGGATTCAAACTGATTGACAAATTCTTCGGTCGAGCCTCGAAGGGTAGAAGGGTGGCGGCAACGAGAGGCCAGCTCAGCATCAGCCACCGCGTAAGGTGGATCAACCACCTTTGA

Protein sequence

MGRREREIRDTDANLAMIGIEGFKLIDKFFGRASKGRRVAATRGQLSISHRVRWINHL

Homology

[Close]

BLAST of MELO.jh028206.1 vs. NCBI nr
Match: KGN47421.1 (hypothetical protein Csa_021737 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 1.57e-13
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1  MGRREREIRDTDANLAMIGIEGFKLIDKFFGRASK--GRRVAA 41
          MGRREREI DTDANLA IGIEGFKLIDKFFGRAS   GRRV A
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVA 43

[Close]

BLAST of MELO.jh028206.1 vs. NCBI nr
Match: KGN47422.1 (hypothetical protein Csa_021740 [Cucumis sativus])

HSP 1 Score: 47.4 bits (111), Expect = 6.28e-05
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 4  REREIRDTDANLAMIGIEGFKLIDKFFGRASK--GRRVAA 41
          REREIR +  +LA IG EGF++ID++FGRAS    RRVAA
Sbjct: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAA 44

[Close]

BLAST of MELO.jh028206.1 vs. ExPASy TrEMBL
Match: A0A0A0KI19 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.59e-14
Identity = 37/43 (86.05%), Postives = 37/43 (86.05%), Query Frame = 0


Query: 1  MGRREREIRDTDANLAMIGIEGFKLIDKFFGRASK--GRRVAA 41
          MGRREREI DTDANLA IGIEGFKLIDKFFGRAS   GRRV A
Sbjct: 1  MGRREREIIDTDANLARIGIEGFKLIDKFFGRASTTGGRRVVA 43

[Close]

BLAST of MELO.jh028206.1 vs. ExPASy TrEMBL
Match: A0A0A0KG95 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.04e-05
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 4  REREIRDTDANLAMIGIEGFKLIDKFFGRASK--GRRVAA 41
          REREIR +  +LA IG EGF++ID++FGRAS    RRVAA
Sbjct: 5  REREIRGSRGDLAKIGREGFQIIDEYFGRASSTGARRVAA 44

The following BLAST results are available for this feature:

BLAST of MELO.jh028206.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47421.1	1.57e-13	86.05	hypothetical protein Csa_021737 [Cucumis sativus]	[more]
KGN47422.1	6.28e-05	62.50	hypothetical protein Csa_021740 [Cucumis sativus]	[more]

BLAST of MELO.jh028206.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh028206.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI19	7.59e-14	86.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318680 PE=4 SV=1	[more]
A0A0A0KG95	3.04e-05	62.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G318690 PE=4 SV=1	[more]

BLAST of MELO.jh028206.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh028206.1.t1	MELO.jh028206.1.t1	mRNA