MELO.jh024932.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh024932.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr11: 26118775 .. 26119467 (+)
RNA-Seq ExpressionMELO.jh024932.1
SyntenyMELO.jh024932.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTTAAAAACCCTAAAAGAAAAACCCTAACCCCTCAATCAACCCGCCGCCACTCTCCTCCGTCCAGTAGCCACCGCGAGTCACTGTCGGCCGCCGCATCTTCTTCGTCAATCGAAGCCTAGCCGCGCATCCCAATCATTCGACAGTCACGTCGTCGTTCGCAGCCGATCATCCGCATCCGCCGCTCTCCTCTGCCGTCAGTCGCTGCCCCAACCCCAACCCGCGTGAATCCGTATCGTGCAGCCAACCCGAGCCAATCTACTACCCCGAGCTTCCACCCGCAGATTCGAGGTGAGCCTTACCGCCGTCAGCGTCTTCATCTATATTTCGTGTGTCGCCGATAAAGCCTAGCTGCGTCAGCCATCCGTCGAAGCTCTTCCGTCGCAGCCGTGAGCAAGCATGTGCAAGCTACCATTCCCAACCGCGCTTTATCTTTTAGTCGTGAAGATCGAGCCTCGCCTTCGCCTGAGCCACGCCAGCCACCCGCACCTTCGCCCGAGCTGCGCCAGCCACCCGCATGAATCCGAGACGCGCCCCAGCCGTTGACCTTCAGCCGAGCCGTTTCCCTATCAAATCGAGCCGCCTGTTTTCCTTCAACTAAGCCACCTAGGTAGTTTTTCCCCTAGTCAAGCCATATTGAGCCACCAAGCTTATTTTTGGCTTTTTACCTATTTTTGGTAAGTTTGAGTTGGGTTTTGGTTAGTGCCCGACAAATATTGATTTTGGATCCTAGATAATTTAATTATGGATTTAACTGAATTTTTTTATGATAGATCAATTGGAAGTTGAACTGTGGAACCTTGTCCTAAATTAAGGTAAATTAAGGTTGAGTTGGATCCGACCTCCACTTTGAGTAAGTTGAATTAACTTGATTTTTTTTATCCTAAATTAACTGCAAATTTAGTTATTTTCTTAGCATTTTACCCTTAATGTTTAGGATCTTTCTTGGGAAGCTTGACCTAGCTGTAATGATTTTAATTCTTTCGATTAAACTAATCTCCAAGTAAGAGATTTTACGACTAGACTTTCGACTGAAATTAAAAGATCACATGTGTGTATGGTTATGCATGGACGATAGCTTATTTGCATAACTCGATGTTATTTATTATGACTGACATTGTATTGATGTTTGATGTTGATGACTGATGTCATGTTATGACTGGTAGTATGTTGATGAAGACGACTGCATTATGCTTATGATTAAGATATTTGGATAAGTATGTTATGATTGTTATGTCATGCATGCCATGTTTATGATAATATTATGACACGTTACATGCTATGGATAGGGTATATTGTTAGCTTCACCTATTAGAGTCGTACCCACATGGGTGTCCCTCGAGATCACCACCTTTTATGATTGTGTAGCTCGACGGGATCACCAGTCCACTATGACATTGACATAGACATGATTATGAGTGATTTGACGGGGTCACTCACAGTCCGATTGTCTTAGTGTTCCCTTTGGGTACATTAAAGACAATTTTGTTCTAGATGTTCCTTTGGGTTCACCGAGGACCAGATATATTCCTACGGGACCACAAATTGCATGTGTATGGGAACGTGCTAGTTCAGAGGTACTACCTTTACAGGACTCTAATAGGAAGTTAACATACACCTAGCAGGACTAGTAGTGGGTCCCTTATTGAGTTTATTTTATGCTCACTTTTTCTTGTTTAATTTTACAGGTAAGAGTAGAGGGAAGCTGGTGAATGACAAAAAGTGACCGTGGCGAGCCATAGGGATCATTATTGCTTTCGCTTTATGTCGTTTGATCTGATGCATTATTTTATTTTATTTTATTTAAAACTAGATAGGGCCCGAGTTAAGATTTTGTTAAATTTTATCTTTAAAATATTTGTTTATGATTTTAATAAGTATTTGAGGTTTTGTTTTATTTTCTATTTTTTTTATTTAAGAAATTTTATTATCTTTTTAATTAGTAATGGCCTCAGCTTAGTATAAGGAGTTGGATCGTTACACGGTGCTTCTTCTCATATATGCCATGACAAATCCTTGTTTAATAAGCTTCACAGTATCAAAATATGATAGTCATACTGCTTACTAAAGTCCGTCTAAAAGTTGAGTACACATGTGACATTCCAATAGCAAAACAAGTGATTTTAAAATATGTTTTTTACACTCCTGAATTCAATACAATTTACTGTCATGAGTGCTCTTCTTAAGGATAAGAGATATTCTATATCCTTCACTAACTCTAATTGTATCATTCAGGACAAGTCACAGTTTCAAAAATGATTGGGAAGATTAAATTAATCAGTGGACTCTACTTGCTCAGAATAAAGGACGATAAGAGTAAAGAGTTTTCTACTCGATCTACTGCATTACTATGTAAAGCATCCACAACCACATGGCATAAACGCATGGGACACCCCTCTATCAATAAAATAAAAGAATTGTCCAAAAGGATAGAGATTTCCGATTCTTTGAATTGTAAAGAAACTTGTCATGTTTGTCTCTTAGCTAAACAGAAACGTCTTTCATTTCCAGCCTTGAATAATGTTGCTGAAAACATATTTGACCTTGTGCATTGTGGCATATGGGGTCCTTTTAAAACTCAAACTCATGTAGGTCATTCTTATTTTGCTACCATAGTTGATGATAAGTTAAGATATACTTGGGTTCATCTTTTGAGAAATAAAAACAATATTCTACAA

mRNA sequence

CTCTTAAAAACCCTAAAAGAAAAACCCTAACCCCTCAATCAACCCGCCGCCACTCTCCTCCGTCCAGTAGCCACCGCGAGTCACTGTCGGCCGCCGCATCTTCTTCGTCAATCGAAGCCTAGCCGCGCATCCCAATCATTCGACAGTCACGTCGTCGTTCGCAGCCGATCATCCGCATCCGCCGCTCTCCTCTGCCGTCAGTCGCTGCCCCAACCCCAACCCGCGTGAATCCGTATCGTGCAGCCAACCCGAGCCAATCTACTACCCCGAGCTTCCACCCGCAGATTCGAGGTGAGCCTTACCGCCGTCAGCGTCTTCATCTATATTTCGTGTGTCGCCGATAAAGCCTAGCTGCGTCAGCCATCCGTCGAAGCTCTTCCGTCGCAGCCGTGAGCAAGCATGTGCAAGCTACCATTCCCAACCGCGCTTTATCTTTTAGTCGTGAAGATCGAGCCTCGCCTTCGCCTGAGCCACGCCAGCCACCCGCACCTTCGCCCGAGCTGCGCCAGCCACCCGCATGAATCCGAGACGCGCCCCAGCCGTTGACCTTCAGCCGAGCCGTTTCCCTATCAAATCGAGCCGCCTGTTTTCCTTCAACTAAGCCACCTAGGTAGTTTTTCCCCTAGTCAAGCCATATTGAGCCACCAAGCTTATTTTTGGCTTTTTACCTATTTTTGATCAATTGGAAGTTGAACTGTGGAACCTTGTCCTAAATTAAGGTAAATTAAGGTTGAGTTGGATCCGACCTCCACTTTGAGTAAGTTGAATTAACTTGATTTTTTTTATCCTAAATTAACTGCAAATTTAGTTATTTTCTTAGCATTTTACCCTTAATGTTTAGGATCTTTCTTGGGAAGCTTGACCTAGCTGTAATGATTTTAATTCTTTCGATTAAACTAATCTCCAAGTAAGAGATTTTACGACTAGACTTTCGACTGAAATTAAAAGATCACATGTGTGTATGGTTATGCATGGACGATAGCTTATTTGCATAACTCGATGTTATTTATTATGACTGACATTGTATTGATGTTTGATGTTGATGACTGATGTCATGTTATGACTGGTAGTATGTTGATGAAGACGACTGCATTATGCTTATGATTAAGATATTTGGATAAGTATGTTATGATTGTTATGTCATGCATGCCATGTTTATGATAATATTATGACACGTTACATGCTATGGATAGGGTATATTGTTAGCTTCACCTATTAGAGTCGTACCCACATGGGTGTCCCTCGAGATCACCACCTTTTATGATTGTGTAGCTCGACGGGATCACCAGTCCACTATGACATTGACATAGACATGATTATGAGTGATTTGACGGGGTCACTCACAGTCCGATTGTCTTAGTGTTCCCTTTGGGTACATTAAAGACAATTTTGTTCTAGATGTTCCTTTGGGTTCACCGAGGACCAGATATATTCCTACGGGACCACAAATTGCATGTGTATGGGAACGTGCTAGTTCAGAGGTACTACCTTTACAGGACTCTAATAGGAAGTTAACATACACCTAGCAGGACTAGTAGTGGGTCCCTTATTGAGTTTATTTTATGCTCACTTTTTCTTGTTTAATTTTACAGGTAAGAGTAGAGGGAAGCTGGTGAATGACAAAAAGTGACCGTGGCGAGCCATAGGGATCATTATTGCTTTCGCTTTATGTCGTTTGATCTGATGCATTATTTTATTTTATTTTATTTAAAACTAGATAGGGCCCGAGTTAAGATTTTGTTAAATTTTATCTTTAAAATATTTGTTTATGATTTTAATAAGTATTTGAGGTTTTGTTTTATTTTCTATTTTTTTTATTTAAGAAATTTTATTATCTTTTTAATTAGTAATGGCCTCAGCTTAGTATAAGGAGTTGGATCGTTACACGGTGCTTCTTCTCATATATGCCATGACAAATCCTTGTTTAATAAGCTTCACAGTATCAAAATATGATAGTCATACTGCTTACTAAAGTCCGTCTAAAAGTTGAGTACACATGTGACATTCCAATAGCAAAACAAGTGATTTTAAAATATGTTTTTTACACTCCTGAATTCAATACAATTTACTGTCATGAGTGCTCTTCTTAAGGATAAGAGATATTCTATATCCTTCACTAACTCTAATTGTATCATTCAGGACAAGTCACAGTTTCAAAAATGATTGGGAAGATTAAATTAATCAGTGGACTCTACTTGCTCAGAATAAAGGACGATAAGAGTAAAGAGTTTTCTACTCGATCTACTGCATTACTATGTAAAGCATCCACAACCACATGGCATAAACGCATGGGACACCCCTCTATCAATAAAATAAAAGAATTGTCCAAAAGGATAGAGATTTCCGATTCTTTGAATTGTAAAGAAACTTGTCATGTTTGTCTCTTAGCTAAACAGAAACGTCTTTCATTTCCAGCCTTGAATAATGTTGCTGAAAACATATTTGACCTTGTGCATTGTGGCATATGGGGTCCTTTTAAAACTCAAACTCATGTAGGTCATTCTTATTTTGCTACCATAGTTGATGATAAGTTAAGATATACTTGGGTTCATCTTTTGAGAAATAAAAACAATATTCTACAA

Coding sequence (CDS)

ATGATTGGGAAGATTAAATTAATCAGTGGACTCTACTTGCTCAGAATAAAGGACGATAAGAGTAAAGAGTTTTCTACTCGATCTACTGCATTACTATGTAAAGCATCCACAACCACATGGCATAAACGCATGGGACACCCCTCTATCAATAAAATAAAAGAATTGTCCAAAAGGATAGAGATTTCCGATTCTTTGAATTGTAAAGAAACTTGTCATGTTTGTCTCTTAGCTAAACAGAAACGTCTTTCATTTCCAGCCTTGAATAATGTTGCTGAAAACATATTTGACCTTGTGCATTGTGGCATATGGGGTCCTTTTAAAACTCAAACTCATGTAGGTCATTCTTATTTTGCTACCATAGTTGATGATAAGTTAAGATATACTTGGGTTCATCTTTTGAGAAATAAAAACAATATTCTACAA

Protein sequence

MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQ
Homology
BLAST of MELO.jh024932.1 vs. NCBI nr
Match: CAA3023561.1 (retroelement pol poly [Olea europaea subsp. europaea])

HSP 1 Score: 227 bits (579), Expect = 1.09e-68
Identity = 110/228 (48.25%), Postives = 150/228 (65.79%), Query Frame = 0

Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIE 60
           MIGK  +I GLY+L  KD     F++ S A +   S   WH R+GH S  ++  L   + 
Sbjct: 46  MIGKGSIIQGLYVLDTKD-----FNSVSDAFIGSVSAHVWHNRLGHLSFKRLDVLKDHLP 105

Query: 61  ISDSLNCKET-CHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFAT 120
               ++ K   C++C LAKQ+RLSF + N+++   FDL+HC IWGP+   +H G+ YF T
Sbjct: 106 YDTEMSNKHLPCYICPLAKQRRLSFESHNHLSNQPFDLIHCDIWGPYHVTSHFGYRYFMT 165

Query: 121 IVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTG 180
           +VDD  R+TW+++L+ K++ +  +  FF LV TQF  VIK+FR  NA EL+FK+ F++ G
Sbjct: 166 LVDDHFRFTWLYMLKQKSDAVGAVHRFFNLVATQFRAVIKSFRSDNAGELSFKDFFSEKG 225

Query: 181 TNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 227
             HQFSC   PQ NSVVERKHQ+LLNVAR L FQS+V + FW ECVLT
Sbjct: 226 VIHQFSCVERPQQNSVVERKHQHLLNVARALFFQSRVPIKFWSECVLT 268

BLAST of MELO.jh024932.1 vs. NCBI nr
Match: KAG7585478.1 (Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 217 bits (552), Expect = 6.24e-65
Identity = 105/227 (46.26%), Postives = 145/227 (63.88%), Query Frame = 0

Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIE 60
           MIG  + I  LY+L      +++ +    ++     TT WH R+GHPS++KI+ ++  + 
Sbjct: 1   MIGSGEQIGNLYVLDKASITTQDCNGVPCSVNAVVDTTLWHNRLGHPSVSKIESITDVLG 60

Query: 61  ISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 120
           +  + N    C +C LAKQK L + + NN+ EN+FDL+H  IWGPF   T  G+ YF TI
Sbjct: 61  LKQNNNKGFHCSICPLAKQKHLPYISQNNICENVFDLLHIDIWGPFSVPTVEGYRYFLTI 120

Query: 121 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 180
           VDD  R TW++LLR K+ +LQV P F K+VETQ+  V+K  R  NA EL F  L+   G 
Sbjct: 121 VDDHSRVTWLYLLRTKSEVLQVFPDFLKMVETQYKAVVKGVRSDNAPELQFTALYKSKGI 180

Query: 181 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 227
               SC  TP+ NSVVERKHQ++LNVAR+LMFQ+ + L +WG+CVLT
Sbjct: 181 QSFHSCPETPEQNSVVERKHQHILNVARSLMFQANLPLEYWGDCVLT 227

BLAST of MELO.jh024932.1 vs. NCBI nr
Match: KAG7587171.1 (Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 229 bits (583), Expect = 7.18e-65
Identity = 115/230 (50.00%), Postives = 151/230 (65.65%), Query Frame = 0

Query: 1   MIGKIKLISGLYLLRIKDDKSKEFST--RSTALLCKASTTTWHKRMGHPSINKIKELSKR 60
           MIG   L+  LY+L ++  K+   ++   +      A  T WH+R+GHPS  K+++LS  
Sbjct: 572 MIGSANLLHNLYILNLQSLKTPTNASIVNNFCGSLTADGTIWHQRLGHPSTAKLEQLSGT 631

Query: 61  IEISDSLNCKET-CHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYF 120
           + ++ S     T CHVC LAKQKRLSFP  NNV+ N FDL+H  IWGPF  ++  G+ +F
Sbjct: 632 LSLAKSALSSHTHCHVCPLAKQKRLSFPFNNNVSSNPFDLIHLDIWGPFSVESIEGYKFF 691

Query: 121 ATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAK 180
            TIVDD  R TW+++L+NK+++  V   F KL+ TQ+   IK  R  NA EL F EL  +
Sbjct: 692 LTIVDDCTRVTWIYMLKNKSDVSNVFSTFIKLIFTQYQTKIKAIRSDNAPELKFNELVKE 751

Query: 181 TGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 227
            G  H FSCAYTPQ NSVVERKHQ+LLNVAR L+FQSKV L +W +CVLT
Sbjct: 752 NGMIHYFSCAYTPQQNSVVERKHQHLLNVARALLFQSKVPLIYWSDCVLT 801

BLAST of MELO.jh024932.1 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (569), Expect = 7.91e-65
Identity = 116/218 (53.21%), Postives = 147/218 (67.43%), Query Frame = 0

Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKA---STTTWHKRMGHPSINKIKELSK 60
           MIGK    +GLY+L      +KE +T   A   K    S  TWH+R+GH S   +  LS 
Sbjct: 476 MIGKASCQNGLYVL------NKEANTNCIAAGVKINAISVDTWHQRLGHLSPKCLSSLSS 535

Query: 61  RIEISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYF 120
            + +S+      +CHVC LAKQKRLSF + NNVA + FDLVH  IWGPFK  ++ G+ YF
Sbjct: 536 TLCLSNHSIHHSSCHVCPLAKQKRLSFHSNNNVASSPFDLVHADIWGPFKIPSYGGYKYF 595

Query: 121 ATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAK 180
            T+VDD LR+TWV++LR K+++L ++P FF+L+ETQFSKVIK+FR  NA EL   E FA+
Sbjct: 596 LTLVDDCLRFTWVYMLRQKSDVLHIVPKFFQLIETQFSKVIKSFRSDNAPELKLTEFFAQ 655

Query: 181 TGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSK 215
            GT HQFSC   PQ NSVVERKHQ+LLNVAR L F  +
Sbjct: 656 KGTVHQFSCVEQPQQNSVVERKHQHLLNVARALFFSQE 687

BLAST of MELO.jh024932.1 vs. NCBI nr
Match: CAE5963143.1 (unnamed protein product [Arabidopsis arenosa])

HSP 1 Score: 227 bits (579), Expect = 9.94e-65
Identity = 115/232 (49.57%), Postives = 157/232 (67.67%), Query Frame = 0

Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKA----STTTWHKRMGHPSINKIKELS 60
           MIGK +L + LY L   D +S+   +++++L+C      S++ WH R+GHPS +KI+ LS
Sbjct: 96  MIGKGRLQNKLYFL---DSESQSSQSQASSLICNLNNSDSSSLWHSRLGHPSFSKIQALS 155

Query: 61  KRIEISDS-LNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHS 120
           + + +S + L     C  C LAKQ+RLSFP+LNNV++N FDLVH  +WGPF   +  G  
Sbjct: 156 EDLSLSKTKLKDWSHCKTCHLAKQRRLSFPSLNNVSKNPFDLVHLDVWGPFSVVSTEGFR 215

Query: 121 YFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELF 180
           YF T+VDD  R TWV+LL++K+++L V P F  LVETQ+S+ +K  R  NA EL+F  L 
Sbjct: 216 YFLTLVDDCSRVTWVYLLKSKSDVLTVFPSFLNLVETQYSQKVKAIRSDNAPELSFTSLL 275

Query: 181 AKTGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 227
           A  G  H FSC  TPQ NSVVERKHQ++LNVAR L+FQS V L +W +C+ T
Sbjct: 276 ASKGIFHYFSCVDTPQQNSVVERKHQHILNVARALLFQSNVPLEYWSDCIKT 324

BLAST of MELO.jh024932.1 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.8e-29
Identity = 69/196 (35.20%), Postives = 106/196 (54.08%), Query Frame = 0

Query: 36  STTTWHKRMGHPSINKIKELSKRIEISDSLNCK-ETCHVCLLAKQKRLSFPALNNVAENI 95
           S   WHKRMGH S   ++ L+K+  IS +     + C  CL  KQ R+SF   +    NI
Sbjct: 421 SVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNI 480

Query: 96  FDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQF 155
            DLV+  + GP + ++  G+ YF T +DD  R  WV++L+ K+ + QV   F  LVE + 
Sbjct: 481 LDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERET 540

Query: 156 SKVIKNFRPSNALEL---NFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLM 215
            + +K  R  N  E     F+E  +  G  H+ +   TPQHN V ER ++ ++   R+++
Sbjct: 541 GRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSML 600

Query: 216 FQSKVLLAFWGECVLT 228
             +K+  +FWGE V T
Sbjct: 601 RMAKLPKSFWGEAVQT 616

BLAST of MELO.jh024932.1 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.4e-18
Identity = 51/192 (26.56%), Postives = 95/192 (49.48%), Query Frame = 0

Query: 34  KASTTTWHKRMGHPSINKIKELSKRIEISDSLNCKE---TCHVCLLAKQKRLSFPALNNV 93
           KA+ ++WH R+GHP+ + +  +     +S  LN      +C  CL+ K  ++ F      
Sbjct: 461 KATHSSWHARLGHPAPSILNSVISNYSLS-VLNPSHKFLSCSDCLINKSNKVPFSQSTIN 520

Query: 94  AENIFDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLV 153
           +    + ++  +W      +H  + Y+   VD   RYTW++ L+ K+ + +    F  L+
Sbjct: 521 STRPLEYIYSDVWSS-PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLL 580

Query: 154 ETQFSKVIKNFRPSNALE-LNFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNVART 213
           E +F   I  F   N  E +   E F++ G +H  S  +TP+HN + ERKH++++    T
Sbjct: 581 ENRFQTRIGTFYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLT 640

Query: 214 LMFQSKVLLAFW 222
           L+  + +   +W
Sbjct: 641 LLSHASIPKTYW 650

BLAST of MELO.jh024932.1 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 60/201 (29.85%), Postives = 94/201 (46.77%), Query Frame = 0

Query: 40  WHKRMGHPSINKIKELSKRIEISD-------SLNCKETCHVCLLAKQKRLSFPAL---NN 99
           WH+R GH S  K+ E+ ++   SD        L+C E C  CL  KQ RL F  L    +
Sbjct: 418 WHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSC-EICEPCLNGKQARLPFKQLKDKTH 477

Query: 100 VAENIFDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKL 159
           +   +F +VH  + GP    T    +YF   VD    Y   +L++ K+++  +   F   
Sbjct: 478 IKRPLF-VVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAK 537

Query: 160 VETQFSKVIKNFRPSNALEL---NFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNV 219
            E  F+  +      N  E      ++   K G ++  +  +TPQ N V ER  + +   
Sbjct: 538 SEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEK 597

Query: 220 ARTLMFQSKVLLAFWGECVLT 228
           ART++  +K+  +FWGE VLT
Sbjct: 598 ARTMVSGAKLDKSFWGEAVLT 616

BLAST of MELO.jh024932.1 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.6e-16
Identity = 46/191 (24.08%), Postives = 93/191 (48.69%), Query Frame = 0

Query: 34  KASTTTWHKRMGHPSINKIKEL--SKRIEISDSLNCKETCHVCLLAKQKRLSFPALNNVA 93
           KA+ ++WH R+GHPS+  +  +  +  + + +  +   +C  C + K  ++ F      +
Sbjct: 440 KATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFINKSHKVPFSNSTITS 499

Query: 94  ENIFDLVHCGIWGPFKTQTHVGHSYFATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVE 153
               + ++  +W      +   + Y+   VD   RYTW++ L+ K+ +      F  LVE
Sbjct: 500 SKPLEYIYSDVWSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVE 559

Query: 154 TQFSKVIKNFRPSNALE-LNFKELFAKTGTNHQFSCAYTPQHNSVVERKHQYLLNVARTL 213
            +F   I      N  E +  ++  ++ G +H  S  +TP+HN + ERKH++++ +  TL
Sbjct: 560 NRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTL 619

Query: 214 MFQSKVLLAFW 222
           +  + V   +W
Sbjct: 620 LSHASVPKTYW 629

BLAST of MELO.jh024932.1 vs. ExPASy TrEMBL
Match: A0A1J3HJY9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccaea caerulescens OX=107243 GN=LE_TR2272_c1_g1_i1_g.6347 PE=4 SV=1)

HSP 1 Score: 214 bits (544), Expect = 1.02e-65
Identity = 110/227 (48.46%), Postives = 145/227 (63.88%), Query Frame = 0

Query: 2   IGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEI 61
           IG+ K I+ LY+L   D  S   S  +           WHKR+GHPS+++I  +SK + I
Sbjct: 21  IGQGKRIANLYVL---DTTSSLISVNAVV-----DVGVWHKRLGHPSLSRITTISKTLGI 80

Query: 62  SDSLNCKET-CHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 121
           S   N     CH+C LAKQ++LSFP  NN+     +L+H  +WGPF  +T  G+ YF TI
Sbjct: 81  SKHKNKGLAYCHICHLAKQRKLSFPYPNNICNTNLELLHIDVWGPFSVETLDGYKYFLTI 140

Query: 122 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 181
           VDD  R TWV+LLR+K+++L V P F K+VE QF+  IK+ R  NA EL F +LF + G 
Sbjct: 141 VDDHSRATWVYLLRSKSDVLTVFPAFIKMVENQFAAKIKSVRSDNAPELRFTKLFQEKGI 200

Query: 182 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 227
               SC  TP+ NSVVERKHQ++L VAR LMFQS+V L FWG+C+LT
Sbjct: 201 ISYHSCPETPEQNSVVERKHQHILTVARALMFQSQVPLTFWGDCILT 239

BLAST of MELO.jh024932.1 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 223 bits (569), Expect = 3.83e-65
Identity = 116/218 (53.21%), Postives = 147/218 (67.43%), Query Frame = 0

Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKA---STTTWHKRMGHPSINKIKELSK 60
           MIGK    +GLY+L      +KE +T   A   K    S  TWH+R+GH S   +  LS 
Sbjct: 476 MIGKASCQNGLYVL------NKEANTNCIAAGVKINAISVDTWHQRLGHLSPKCLSSLSS 535

Query: 61  RIEISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYF 120
            + +S+      +CHVC LAKQKRLSF + NNVA + FDLVH  IWGPFK  ++ G+ YF
Sbjct: 536 TLCLSNHSIHHSSCHVCPLAKQKRLSFHSNNNVASSPFDLVHADIWGPFKIPSYGGYKYF 595

Query: 121 ATIVDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAK 180
            T+VDD LR+TWV++LR K+++L ++P FF+L+ETQFSKVIK+FR  NA EL   E FA+
Sbjct: 596 LTLVDDCLRFTWVYMLRQKSDVLHIVPKFFQLIETQFSKVIKSFRSDNAPELKLTEFFAQ 655

Query: 181 TGTNHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSK 215
            GT HQFSC   PQ NSVVERKHQ+LLNVAR L F  +
Sbjct: 656 KGTVHQFSCVEQPQQNSVVERKHQHLLNVARALFFSQE 687

BLAST of MELO.jh024932.1 vs. ExPASy TrEMBL
Match: A0A5D3D1N3 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00250 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 5.21e-62
Identity = 109/227 (48.02%), Postives = 147/227 (64.76%), Query Frame = 0

Query: 2   IGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEI 61
           IG  KL  GLY+L    D+   F +       KAS   WH+RMGHPS   +  L   + +
Sbjct: 108 IGSAKLFQGLYIL----DQPTCFPSICAVTANKASL--WHQRMGHPSTETLNSLQIPLFL 167

Query: 62  SDSLNCKET-CHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 121
             S   K + C +C LAKQ++LSF + N+++ N FDL+H  IWGPF T+T+  +SYF TI
Sbjct: 168 KPSTVDKMSHCTICPLAKQRKLSFTSNNHLSSNAFDLIHVDIWGPFSTETYSEYSYFLTI 227

Query: 122 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 181
           VDD  RYTWV +L+ K++++ +IP FFKL+ETQ+ K IK  R  NA +L F   F + G 
Sbjct: 228 VDDATRYTWVFMLKLKSDVISIIPHFFKLIETQYGKAIKKVRSDNAHKLKFTTFFEQKGV 287

Query: 182 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 227
            HQ+SC   PQ NSVVE+KHQ++LN AR L FQS+V L FWG+C++T
Sbjct: 288 IHQYSCVQWPQQNSVVEKKHQHILNTARALYFQSQVPLNFWGDCIVT 328

BLAST of MELO.jh024932.1 vs. ExPASy TrEMBL
Match: A0A5A7VQN7 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002210 PE=4 SV=1)

HSP 1 Score: 217 bits (552), Expect = 2.50e-61
Identity = 109/227 (48.02%), Postives = 147/227 (64.76%), Query Frame = 0

Query: 2   IGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIEI 61
           IG  KL  GLY+L    D+   F +       KAS   WH+RMGHPS   +  L   + +
Sbjct: 108 IGSAKLFQGLYIL----DQPTCFPSICAVTANKASL--WHQRMGHPSTETLNSLQIPLFL 167

Query: 62  SDSLNCKET-CHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 121
             S   K + C +C LAKQ++LSF + N+++ N FDL+H  IWGPF T+T+  +SYF TI
Sbjct: 168 KPSTVDKMSHCTICPLAKQRKLSFTSNNHLSSNAFDLIHVDIWGPFSTETYSEYSYFLTI 227

Query: 122 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 181
           VDD  RYTWV +L+ K++++ +IP FFKL+ETQ+ K IK  R  NA +L F   F + G 
Sbjct: 228 VDDATRYTWVFMLKLKSDVISIIPHFFKLIETQYGKAIKKVRSDNAHKLKFTTFFEQKGV 287

Query: 182 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 227
            HQ+SC   PQ NSVVE+KHQ++LN AR L FQS+V L FWG+C++T
Sbjct: 288 IHQYSCVQWPQQNSVVEKKHQHILNTARALYFQSQVPLNFWGDCIVT 328

BLAST of MELO.jh024932.1 vs. ExPASy TrEMBL
Match: A0A1J3G7B5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Noccaea caerulescens OX=107243 GN=LC_TR6227_c2_g1_i1_g.20992 PE=4 SV=1)

HSP 1 Score: 208 bits (529), Expect = 2.30e-60
Identity = 103/227 (45.37%), Postives = 145/227 (63.88%), Query Frame = 0

Query: 1   MIGKIKLISGLYLLRIKDDKSKEFSTRSTALLCKASTTTWHKRMGHPSINKIKELSKRIE 60
           MIG+ + ++ LY+L +  D     S +S  +     +  WH R+GHPS  +   ++  + 
Sbjct: 20  MIGQGEAVANLYVLDVGSDLQTP-SRKSPFISIVVDSALWHNRLGHPSDYRTDFVTDVLG 79

Query: 61  ISDSLNCKETCHVCLLAKQKRLSFPALNNVAENIFDLVHCGIWGPFKTQTHVGHSYFATI 120
           I +    +  C +C LAKQK LSF + NN+  N FDL+H  +WGPF  QT  G+ +F TI
Sbjct: 80  IKNINKRRLPCAICPLAKQKHLSFDSKNNMCANAFDLLHIDLWGPFSVQTVEGYKHFLTI 139

Query: 121 VDDKLRYTWVHLLRNKNNILQVIPCFFKLVETQFSKVIKNFRPSNALELNFKELFAKTGT 180
           VDD  R TWV+LLR K+ +L++ P F K+VETQ+S  ++  R  NA EL F +L+ + G 
Sbjct: 140 VDDHTRVTWVYLLRTKDEVLRIFPEFLKMVETQYSCKVRGVRSDNAPELKFADLYKEKGI 199

Query: 181 NHQFSCAYTPQHNSVVERKHQYLLNVARTLMFQSKVLLAFWGECVLT 227
               SC  TP+ NSVVERKHQ++LNVAR+LMFQ+KV L +WG+CVLT
Sbjct: 200 TAFHSCPETPEQNSVVERKHQHILNVARSLMFQAKVPLEYWGDCVLT 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAA3023561.11.09e-6848.25retroelement pol poly [Olea europaea subsp. europaea][more]
KAG7585478.16.24e-6546.26Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAG7587171.17.18e-6550.00Integrase catalytic core [Arabidopsis thaliana x Arabidopsis arenosa][more]
KAA0065480.17.91e-6553.21Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T... [more]
CAE5963143.19.94e-6549.57unnamed protein product [Arabidopsis arenosa][more]
Match NameE-valueIdentityDescription
P109788.8e-2935.20Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW25.4e-1826.56Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
P041462.7e-1729.85Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
Q9ZT948.6e-1624.08Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
Match NameE-valueIdentityDescription
A0A1J3HJY91.02e-6548.46Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Noccae... [more]
A0A5A7VE663.83e-6553.21Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O... [more]
A0A5D3D1N35.21e-6248.02Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O... [more]
A0A5A7VQN72.50e-6148.02Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O... [more]
A0A1J3G7B52.30e-6045.37Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Noccaea caerulesc... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 10..79
e-value: 1.6E-12
score: 47.1
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 87..139
e-value: 6.0E-6
score: 27.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh024932.1.t2MELO.jh024932.1.t2mRNA
MELO.jh024932.1.t1MELO.jh024932.1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding