MELO.jh024751.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh024751.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionmediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr11: 22970866 .. 22971195 (-)
RNA-Seq ExpressionMELO.jh024751.1
SyntenyMELO.jh024751.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGATTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCATCCTGATAGAGTACTTAGACAGTTCGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGACATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAA

mRNA sequence

ACGATTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCATCCTGATAGAGTACTTAGACAGTTCGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGACATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAA

Coding sequence (CDS)

ATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAA

Protein sequence

MDVTQEYIHWYKNISKLYITQPGAAMSHLVYI
Homology
[Close]
BLAST of MELO.jh024751.1 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 2.38e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29

[Close]
BLAST of MELO.jh024751.1 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 2.88e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 21 MDVTQEYIHWYKNISKLYITQPGAAMSHL 49

[Close]
BLAST of MELO.jh024751.1 vs. NCBI nr
Match: KAA0055863.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK24087.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 3.41e-11
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQP AAMSHL
Sbjct: 64 MDVTQEYIHWYKNISKLYITQPRAAMSHL 92

[Close]
BLAST of MELO.jh024751.1 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.96e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1    MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
            MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 1034 MDVTQEYIHWYKNISKLYITQPGAAMSHL 1062

[Close]
BLAST of MELO.jh024751.1 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.97e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
           MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 764 MDVTQEYIHWYKNISKLYITQPGAAMSHL 792

[Close]
BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A1S4DWZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.15e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29

[Close]
BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.40e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 21 MDVTQEYIHWYKNISKLYITQPGAAMSHL 49

[Close]
BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A5D3DKG5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00590 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.65e-11
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0 

Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQP AAMSHL
Sbjct: 64 MDVTQEYIHWYKNISKLYITQPRAAMSHL 92

[Close]
BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.40e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1    MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
            MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 1034 MDVTQEYIHWYKNISKLYITQPGAAMSHL 1062

[Close]
BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.41e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
           MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 764 MDVTQEYIHWYKNISKLYITQPGAAMSHL 792

The following BLAST results are available for this feature:
BLAST of MELO.jh024751.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016900498.12.38e-11100.00PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi... [more]
XP_008449513.12.88e-11100.00PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X... [more]
KAA0055863.13.41e-1196.55serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYJ95836.14.96e-11100.00serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYK27427.14.97e-11100.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
BLAST of MELO.jh024751.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DWZ91.15e-11100.00GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX... [more]
A0A1S3BLK41.40e-11100.00mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5D3DKG51.65e-1196.55Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3BAB02.40e-11100.00Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5D3DUI12.41e-11100.00Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh024751.1.t1MELO.jh024751.1.t1mRNA