MELO.jh023278.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh023278.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	NBS-LRR type resistance protein
Location	chr10: 26651813 .. 26652714 (-)
RNA-Seq Expression	MELO.jh023278.1
Synteny	MELO.jh023278.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTCTCACCTACTCATGATTCAAATGCAAACCTTCTCACATCGAACTTGAACAGCAATCTAGGTCTATAAACTAGACACAATTTGTGTAGGTAACGATGACACATGATTTGCGTCAATGTAAGGGTATTGATGACAATATATTGGTGTCGAGTTATAGATAACGGCGATATATTTATTGCATCAAGGTAAGGGTATTAATGACACAATTTTAGTGTCATCTAAACATATTTAATGACACGTTTTTCAAAGTGTCGTTAAATAACCTTTCTTGATAGTGGCTTCAAGGACGCAAAAAATTGTGTCGTTGAAAGTCATTAAGACATAAAATTTGCATCATTAAAGTCGTTTTTAGAACGACAGTACAAGCTTGCTGAGAGAAAAGAGAAGTCGATCGATCGTGTGGAGTTGTTCCGGGAAACACACATTCGAGCTGGGACGTTCGTGTCGCAGGCCGCAGGGGATGCGCATGTAAGTTATGCCTTATTAATTATCTTCTTTCATTATATATTTTTTGCGCGTTACCTAACATAGTTTTTAAATTTTTTGTAGAATCAAATGCTGGAACTCCAATCCTAGCCTACCCCAGAGGGTAGTCAGCCATTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGATGACCAGGCTACTCAAAAGGCCTTGGTTGGGGATCCAAGCCGAAGACCTGTAGGACGACGAGTGCGAGCAGTTCATCGACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTAATGAAGTTTTGGAACGGATTAAAGTACAAGATAGAAATCACCAAGTGTTAGCTTCACATGTGGAAACAATGAAAAAGATGATAAGAGAATTAACTCGTGCACAACAGGGACCACCACGTGATCCCTA

mRNA sequence

ATGACCTTCTCACCTACTCATGATTCAAATGCAAACCTTCTCACATCGAACTTGAACAGCAATCTAGAACGACAGTACAAGCTTGCTGAGAGAAAAGAGAAGTCGATCGATCGTGTGGAGTTGTTCCGGGAAACACACATTCGAGCTGGGACGTTCGTGTCGCAGGCCGCAGGGGATGCGCATCCTACCCCAGAGGGTAGTCAGCCATTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGATGACCAGGCTACTCAAAAGGCCTTGGTTGGGGATCCAAGCCGAAGACCTGTAGGACGACGAGTGCGAGCAGTTCATCGACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTAATGAAGTTTTGGAACGGATTAAAGTACAAGATAGAAATCACCAAGTGTTAGCTTCACATGTGGAAACAATGAAAAAGATGATAAGAGAATTAACTCGTGCACAACAGGGACCACCACGTGATCCCTA

Coding sequence (CDS)

ATGCGCATCCTACCCCAGAGGGTAGTCAGCCATTCTCTGAGGATGAGATATGCGATCAGGTGTTGGGTAGATGACCAGGCTACTCAAAAGGCCTTGGTTGGGGATCCAAGCCGAAGACCTGTAGGACGACGAGTGCGAGCAGTTCATCGACATCTTGTTCGCAGTCCACACAAAAAGAGATTGAATTACAAGCTAAACTTAATGAAGTTTTGGAACGGATTAAAGTACAAGATAGAAATCACCAAGTGTTAG

Protein sequence

MRILPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNYKLNLMKFWNGLKYKIEITKC

Homology

[Close]

BLAST of MELO.jh023278.1 vs. NCBI nr
Match: TYK02447.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (367), Expect = 1.80e-43
Identity = 71/79 (89.87%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 4  LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
          LPQRVVSHSLRMRYAIRCWVDD ATQKALVGDPSRRPV RRV+AV RHL+RSP KKRLNY
Sbjct: 13 LPQRVVSHSLRMRYAIRCWVDDHATQKALVGDPSRRPVERRVQAVRRHLIRSPQKKRLNY 72

Query: 64 KLNLMKFWNGLKYKIEITK 82
          KLN MK WNGLKYKIEITK
Sbjct: 73 KLNFMKLWNGLKYKIEITK 91

[Close]

BLAST of MELO.jh023278.1 vs. NCBI nr
Match: KAA0048671.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (369), Expect = 2.45e-43
Identity = 71/79 (89.87%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 4   LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
           LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRP  R+V+AV RH VRSPHKKRLNY
Sbjct: 46  LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHFVRSPHKKRLNY 105

Query: 64  KLNLMKFWNGLKYKIEITK 82
           KLN MK WNGLKYKIEITK
Sbjct: 106 KLNFMKLWNGLKYKIEITK 124

[Close]

BLAST of MELO.jh023278.1 vs. NCBI nr
Match: TYK05099.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 1.16e-41
Identity = 71/79 (89.87%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 4   LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
           LPQRVVSHSLRMRYAIR WVDDQATQKALVGDPSRRP  RRV+AV RHLVRSP KKRLNY
Sbjct: 46  LPQRVVSHSLRMRYAIRYWVDDQATQKALVGDPSRRPAERRVQAVRRHLVRSPQKKRLNY 105

Query: 64  KLNLMKFWNGLKYKIEITK 82
           KLN MK WNGLKYKIEITK
Sbjct: 106 KLNFMKLWNGLKYKIEITK 124

[Close]

BLAST of MELO.jh023278.1 vs. NCBI nr
Match: KAA0037656.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 141 bits (355), Expect = 1.22e-41
Identity = 70/79 (88.61%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 4  LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
          LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRP  RRV+AV RHLVRSP KKRLNY
Sbjct: 13 LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERRVQAVRRHLVRSPQKKRLNY 72

Query: 64 KLNLMKFWNGLKYKIEITK 82
          KLN  K WN LKYKIEITK
Sbjct: 73 KLNFKKLWNRLKYKIEITK 91

[Close]

BLAST of MELO.jh023278.1 vs. NCBI nr
Match: KAA0043579.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK19765.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 142 bits (358), Expect = 1.58e-41
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 4   LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
           LPQRVVSHSLRMRYAIRCW+DDQATQKALVGDPSRRPV RRV+AV RHL+RS  KKRLNY
Sbjct: 58  LPQRVVSHSLRMRYAIRCWIDDQATQKALVGDPSRRPVKRRVQAVRRHLIRSSQKKRLNY 117

Query: 64  KLNLMKFWNGLKYKIEIT 81
           KLN MK WNGLKYKIEIT
Sbjct: 118 KLNFMKLWNGLKYKIEIT 135

[Close]

BLAST of MELO.jh023278.1 vs. ExPASy TrEMBL
Match: A0A5D3BSP0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00560 PE=4 SV=1)

HSP 1 Score: 145 bits (367), Expect = 8.72e-44
Identity = 71/79 (89.87%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 4  LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
          LPQRVVSHSLRMRYAIRCWVDD ATQKALVGDPSRRPV RRV+AV RHL+RSP KKRLNY
Sbjct: 13 LPQRVVSHSLRMRYAIRCWVDDHATQKALVGDPSRRPVERRVQAVRRHLIRSPQKKRLNY 72

Query: 64 KLNLMKFWNGLKYKIEITK 82
          KLN MK WNGLKYKIEITK
Sbjct: 73 KLNFMKLWNGLKYKIEITK 91

[Close]

BLAST of MELO.jh023278.1 vs. ExPASy TrEMBL
Match: A0A5A7U512 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold670G00200 PE=4 SV=1)

HSP 1 Score: 146 bits (369), Expect = 1.19e-43
Identity = 71/79 (89.87%), Postives = 73/79 (92.41%), Query Frame = 0


Query: 4   LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
           LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRP  R+V+AV RH VRSPHKKRLNY
Sbjct: 46  LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERQVQAVRRHFVRSPHKKRLNY 105

Query: 64  KLNLMKFWNGLKYKIEITK 82
           KLN MK WNGLKYKIEITK
Sbjct: 106 KLNFMKLWNGLKYKIEITK 124

[Close]

BLAST of MELO.jh023278.1 vs. ExPASy TrEMBL
Match: A0A5D3C3Z9 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00020 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 5.62e-42
Identity = 71/79 (89.87%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 4   LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
           LPQRVVSHSLRMRYAIR WVDDQATQKALVGDPSRRP  RRV+AV RHLVRSP KKRLNY
Sbjct: 46  LPQRVVSHSLRMRYAIRYWVDDQATQKALVGDPSRRPAERRVQAVRRHLVRSPQKKRLNY 105

Query: 64  KLNLMKFWNGLKYKIEITK 82
           KLN MK WNGLKYKIEITK
Sbjct: 106 KLNFMKLWNGLKYKIEITK 124

[Close]

BLAST of MELO.jh023278.1 vs. ExPASy TrEMBL
Match: A0A5A7T670 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G003190 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 5.90e-42
Identity = 70/79 (88.61%), Postives = 71/79 (89.87%), Query Frame = 0


Query: 4  LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
          LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRP  RRV+AV RHLVRSP KKRLNY
Sbjct: 13 LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPAERRVQAVRRHLVRSPQKKRLNY 72

Query: 64 KLNLMKFWNGLKYKIEITK 82
          KLN  K WN LKYKIEITK
Sbjct: 73 KLNFKKLWNRLKYKIEITK 91

[Close]

BLAST of MELO.jh023278.1 vs. ExPASy TrEMBL
Match: A0A5A7TQY0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1286G00050 PE=4 SV=1)

HSP 1 Score: 142 bits (358), Expect = 7.63e-42
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 4   LPQRVVSHSLRMRYAIRCWVDDQATQKALVGDPSRRPVGRRVRAVHRHLVRSPHKKRLNY 63
           LPQRVVSHSLRMRYAIRCW+DDQATQKALVGDPSRRPV RRV+AV RHL+RS  KKRLNY
Sbjct: 58  LPQRVVSHSLRMRYAIRCWIDDQATQKALVGDPSRRPVKRRVQAVRRHLIRSSQKKRLNY 117

Query: 64  KLNLMKFWNGLKYKIEIT 81
           KLN MK WNGLKYKIEIT
Sbjct: 118 KLNFMKLWNGLKYKIEIT 135

The following BLAST results are available for this feature:

BLAST of MELO.jh023278.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK02447.1	1.80e-43	89.87	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0048671.1	2.45e-43	89.87	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
TYK05099.1	1.16e-41	89.87	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0037656.1	1.22e-41	88.61	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0043579.1	1.58e-41	88.46	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK19765.1 NBS-LRR t...	[more]

BLAST of MELO.jh023278.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh023278.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSP0	8.72e-44	89.87	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7U512	1.19e-43	89.87	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3C3Z9	5.62e-42	89.87	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7T670	5.90e-42	88.61	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7TQY0	7.63e-42	88.46	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of MELO.jh023278.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh023278.1.t1	MELO.jh023278.1.t1	mRNA