MELO.jh018739.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh018739.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Beta-galactosidase
Location	chr08: 22022772 .. 22023003 (+)
RNA-Seq Expression	MELO.jh018739.1
Synteny	MELO.jh018739.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCACGCTTCCTCTTCTTTGGGAATAGCTCAACAGCAACTGAAAGAGCTTCGATAATAGATTGCAGCAATTGAGGCTACCTAGAGACGACATCCAACATTGTACCAATGTATTATGAGAATCCGGTAACCTCGTTCCCTACTTTATCCTCTTCCTATGTGAATGCTAGTCTAACACACTTGGAGCTATTGTCCAGTCAGGTATACCTCAGGCCTTTAGTTTCATTAGTATTG

mRNA sequence

TGCACGCTTCCTCTTCTTTGGGAATAGCTCAACAGCAACTGAAAGAGCTTCGATAATAGATTGCAGCAATTGAGGCTACCTAGAGACGACATCCAACATTGTACCAATGTATTATGAGAATCCGGTAACCTCGTTCCCTACTTTATCCTCTTCCTATGTGAATGCTAGTCTAACACACTTGGAGCTATTGTCCAGTCAGGTATACCTCAGGCCTTTAGTTTCATTAGTATTG

Coding sequence (CDS)

ATGTATTATGAGAATCCGGTAACCTCGTTCCCTACTTTATCCTCTTCCTATGTGAATGCTAGTCTAACACACTTGGAGCTATTGTCCAGTCAGGTATACCTCAGGCCTTTAGTTTCATTAGTATTG

Protein sequence

MYYENPVTSFPTLSSSYVNASLTHLELLSSQVYLRPLVSLVL

Homology

[Close]

BLAST of MELO.jh018739.1 vs. NCBI nr
Match: KAA0041353.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.99e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MYYENPVTSFPTLSSSYVNASLTHLELLSSQV 32
          MYYENPVTSFPTLSSSYVNASLTHLELLSSQV
Sbjct: 1  MYYENPVTSFPTLSSSYVNASLTHLELLSSQV 32

[Close]

BLAST of MELO.jh018739.1 vs. NCBI nr
Match: TYK26807.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.99e-10
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MYYENPVTSFPTLSSSYVNASLTHLELLSSQV 32
          MYYENPVTSFPTLSSSYVNASLTHLELLSSQV
Sbjct: 1  MYYENPVTSFPTLSSSYVNASLTHLELLSSQV 32

[Close]

BLAST of MELO.jh018739.1 vs. ExPASy TrEMBL
Match: A0A5D3DSR2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G001200 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.65e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MYYENPVTSFPTLSSSYVNASLTHLELLSSQV 32
          MYYENPVTSFPTLSSSYVNASLTHLELLSSQV
Sbjct: 1  MYYENPVTSFPTLSSSYVNASLTHLELLSSQV 32

[Close]

BLAST of MELO.jh018739.1 vs. ExPASy TrEMBL
Match: A0A5A7TDX0 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G003640 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.65e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MYYENPVTSFPTLSSSYVNASLTHLELLSSQV 32
          MYYENPVTSFPTLSSSYVNASLTHLELLSSQV
Sbjct: 1  MYYENPVTSFPTLSSSYVNASLTHLELLSSQV 32

The following BLAST results are available for this feature:

BLAST of MELO.jh018739.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041353.1	1.99e-10	100.00	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK26807.1	1.99e-10	100.00	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh018739.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh018739.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSR2	9.65e-11	100.00	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G0...	[more]
A0A5A7TDX0	9.65e-11	100.00	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G0...	[more]

BLAST of MELO.jh018739.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh018739.1.t1	MELO.jh018739.1.t1	mRNA