MELO.jh018456.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh018456.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPHD finger protein ALFIN-LIKE 3-like
Locationchr08: 15300185 .. 15300430 (+)
RNA-Seq ExpressionMELO.jh018456.1
SyntenyMELO.jh018456.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TACTAGTTATGATAATGTTTGTTGCTCTGCTAATGTTAAGATAATGTTTTCAGAGGGAAGCTGAAATGCAAGGAATGTATGCAAGGCAGTCGCGGACAAGGGAAGAGGTAGAGACATTGTATGAAAAAGATGAAGACGAGCATGGTGACACCTTACGTGGGGCATGCGGTGAACTATACTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGAGAAATTTGTTGTATGA

mRNA sequence

TACTAGTTATGATAATGTTTGTTGCTCTGCTAATGTTAAGATAATGTTTTCAGAGGGAAGCTGAAATGCAAGGAATGTATGCAAGGCAGTCGCGGACAAGGGAAGAGGTAGAGACATTGTATGAAAAAGATGAAGACGAGCATGGTGACACCTTACGTGGGGCATGCGGTGAACTATACTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGAGAAATTTGTTGTATGA

Coding sequence (CDS)

ATGAAAAAGATGAAGACGAGCATGGTGACACCTTACGTGGGGCATGCGGTGAACTATACTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGAGAAATTTGTTGTATGA

Protein sequence

MKKMKTSMVTPYVGHAVNYTSDEFWICCDICEKWFHEKFVV
Homology
BLAST of MELO.jh018456.1 vs. NCBI nr
Match: TYK28121.1 (PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.26e-08
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 18 NYTSDEFWICCDICEKWFHEKFVV 41
          NY SDEFWICCDICEKWFH KFV+
Sbjct: 35 NYASDEFWICCDICEKWFHGKFVL 58

BLAST of MELO.jh018456.1 vs. NCBI nr
Match: KAA0055918.1 (PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 2.90e-08
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 18 NYTSDEFWICCDICEKWFHEKFVV 41
          NY SDEFWICCDICEKWFH KFV+
Sbjct: 35 NYASDEFWICCDICEKWFHGKFVL 58

BLAST of MELO.jh018456.1 vs. NCBI nr
Match: KAA0065879.1 (PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa] >TYK15138.1 PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 4.41e-08
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFVV 41
           NY SDEFWICCDICEKWFH KFVV
Sbjct: 204 NYASDEFWICCDICEKWFHGKFVV 227

BLAST of MELO.jh018456.1 vs. NCBI nr
Match: KAA0036625.1 (PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo var. makuwa] >TYK03364.1 PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 5.29e-08
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFVV 41
           NY  DEFWICCDICEKWFH KFVV
Sbjct: 83  NYALDEFWICCDICEKWFHGKFVV 106

BLAST of MELO.jh018456.1 vs. NCBI nr
Match: ABO82473.1 (unknown, partial [Helianthus annuus] >ABO82490.1 unknown, partial [Helianthus petiolaris] >ABO82503.1 unknown, partial [Helianthus anomalus] >ABO82474.1 unknown, partial [Helianthus annuus] >ABO82475.1 unknown, partial [Helianthus annuus])

HSP 1 Score: 52.4 bits (124), Expect = 1.33e-07
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0

Query: 18 NYTSDEFWICCDICEKWFHEKFV 40
          NY SDEFWICCDICEKWFH K V
Sbjct: 8  NYASDEFWICCDICEKWFHGKCV 30

BLAST of MELO.jh018456.1 vs. ExPASy Swiss-Prot
Match: Q9FFF5 (PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 3.2e-06
Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NYT+DEFWICCD+CE+W+H K V
Sbjct: 194 NYTNDEFWICCDVCERWYHGKCV 216

BLAST of MELO.jh018456.1 vs. ExPASy Swiss-Prot
Match: Q5XEM9 (PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.4e-06
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCD+CEKWFH + V
Sbjct: 213 NYASDEFWICCDMCEKWFHGECV 235

BLAST of MELO.jh018456.1 vs. ExPASy Swiss-Prot
Match: Q40359 (PHD finger protein Alfin1 OS=Medicago sativa OX=3879 GN=ALFIN-1 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.1e-06
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY +DEFWICCD+CEKWFH K V
Sbjct: 209 NYGTDEFWICCDMCEKWFHGKCV 231

BLAST of MELO.jh018456.1 vs. ExPASy Swiss-Prot
Match: Q8S8M9 (PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=AL6 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY +DEFWICCD CEKWFH K V
Sbjct: 209 NYGTDEFWICCDACEKWFHGKCV 231

BLAST of MELO.jh018456.1 vs. ExPASy Swiss-Prot
Match: B8B8C5 (PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26819 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.2e-05
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           +Y +DEFWICCDICEKWFH K V
Sbjct: 217 SYGADEFWICCDICEKWFHGKCV 239

BLAST of MELO.jh018456.1 vs. ExPASy TrEMBL
Match: A0A5D3DWW0 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00270 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.10e-08
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 18 NYTSDEFWICCDICEKWFHEKFVV 41
          NY SDEFWICCDICEKWFH KFV+
Sbjct: 35 NYASDEFWICCDICEKWFHGKFVL 58

BLAST of MELO.jh018456.1 vs. ExPASy TrEMBL
Match: A0A5A7ULG0 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00370 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.40e-08
Identity = 21/24 (87.50%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 18 NYTSDEFWICCDICEKWFHEKFVV 41
          NY SDEFWICCDICEKWFH KFV+
Sbjct: 35 NYASDEFWICCDICEKWFHGKFVL 58

BLAST of MELO.jh018456.1 vs. ExPASy TrEMBL
Match: A0A5D3CV69 (PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00760 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.14e-08
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFVV 41
           NY SDEFWICCDICEKWFH KFVV
Sbjct: 204 NYASDEFWICCDICEKWFHGKFVV 227

BLAST of MELO.jh018456.1 vs. ExPASy TrEMBL
Match: A0A5D3BW61 (PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00260 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.56e-08
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFVV 41
           NY  DEFWICCDICEKWFH KFVV
Sbjct: 83  NYALDEFWICCDICEKWFHGKFVV 106

BLAST of MELO.jh018456.1 vs. ExPASy TrEMBL
Match: A9PZW2 (PHD-type domain-containing protein (Fragment) OS=Helianthus annuus OX=4232 GN=HT953 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.46e-08
Identity = 20/23 (86.96%), Postives = 20/23 (86.96%), Query Frame = 0

Query: 18 NYTSDEFWICCDICEKWFHEKFV 40
          NY SDEFWICCDICEKWFH K V
Sbjct: 8  NYASDEFWICCDICEKWFHGKCV 30

BLAST of MELO.jh018456.1 vs. TAIR 10
Match: AT5G05610.1 (alfin-like 1 )

HSP 1 Score: 51.2 bits (121), Expect = 2.3e-07
Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NYT+DEFWICCD+CE+W+H K V
Sbjct: 194 NYTNDEFWICCDVCERWYHGKCV 216

BLAST of MELO.jh018456.1 vs. TAIR 10
Match: AT5G05610.2 (alfin-like 1 )

HSP 1 Score: 51.2 bits (121), Expect = 2.3e-07
Identity = 17/23 (73.91%), Postives = 21/23 (91.30%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NYT+DEFWICCD+CE+W+H K V
Sbjct: 194 NYTNDEFWICCDVCERWYHGKCV 216

BLAST of MELO.jh018456.1 vs. TAIR 10
Match: AT5G20510.1 (alfin-like 5 )

HSP 1 Score: 50.4 bits (119), Expect = 3.9e-07
Identity = 18/23 (78.26%), Postives = 20/23 (86.96%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY SDEFWICCD+CEKWFH + V
Sbjct: 213 NYASDEFWICCDMCEKWFHGECV 235

BLAST of MELO.jh018456.1 vs. TAIR 10
Match: AT2G02470.1 (alfin-like 6 )

HSP 1 Score: 49.3 bits (116), Expect = 8.6e-07
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY +DEFWICCD CEKWFH K V
Sbjct: 209 NYGTDEFWICCDACEKWFHGKCV 231

BLAST of MELO.jh018456.1 vs. TAIR 10
Match: AT2G02470.2 (alfin-like 6 )

HSP 1 Score: 49.3 bits (116), Expect = 8.6e-07
Identity = 18/23 (78.26%), Postives = 19/23 (82.61%), Query Frame = 0

Query: 18  NYTSDEFWICCDICEKWFHEKFV 41
           NY +DEFWICCD CEKWFH K V
Sbjct: 200 NYGTDEFWICCDACEKWFHGKCV 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK28121.12.26e-0887.50PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa][more]
KAA0055918.12.90e-0887.50PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa][more]
KAA0065879.14.41e-0891.67PHD finger protein ALFIN-LIKE 3-like isoform X2 [Cucumis melo var. makuwa] >TYK1... [more]
KAA0036625.15.29e-0887.50PHD finger protein ALFIN-LIKE 3-like isoform X1 [Cucumis melo var. makuwa] >TYK0... [more]
ABO82473.11.33e-0786.96unknown, partial [Helianthus annuus] >ABO82490.1 unknown, partial [Helianthus pe... [more]
Match NameE-valueIdentityDescription
Q9FFF53.2e-0673.91PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana OX=3702 GN=AL1 PE=1 SV=1[more]
Q5XEM95.4e-0678.26PHD finger protein ALFIN-LIKE 5 OS=Arabidopsis thaliana OX=3702 GN=AL5 PE=2 SV=1[more]
Q403597.1e-0678.26PHD finger protein Alfin1 OS=Medicago sativa OX=3879 GN=ALFIN-1 PE=1 SV=1[more]
Q8S8M91.2e-0578.26PHD finger protein ALFIN-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=AL6 PE=1 SV=1[more]
B8B8C51.2e-0578.26PHD finger protein ALFIN-LIKE 9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26... [more]
Match NameE-valueIdentityDescription
A0A5D3DWW01.10e-0887.50PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7ULG01.40e-0887.50PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3CV692.14e-0891.67PHD finger protein ALFIN-LIKE 3-like isoform X2 OS=Cucumis melo var. makuwa OX=1... [more]
A0A5D3BW612.56e-0887.50PHD finger protein ALFIN-LIKE 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1... [more]
A9PZW26.46e-0886.96PHD-type domain-containing protein (Fragment) OS=Helianthus annuus OX=4232 GN=HT... [more]
Match NameE-valueIdentityDescription
AT5G05610.12.3e-0773.91alfin-like 1 [more]
AT5G05610.22.3e-0773.91alfin-like 1 [more]
AT5G20510.13.9e-0778.26alfin-like 5 [more]
AT2G02470.18.6e-0778.26alfin-like 6 [more]
AT2G02470.28.6e-0778.26alfin-like 6 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 2..41
e-value: 1.5E-10
score: 42.3
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 18..38

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh018456.1.t1MELO.jh018456.1.t1mRNA