MELO.jh015565.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh015565.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Protein MNN4-like
Location	chr07: 11892450 .. 11893026 (+)
RNA-Seq Expression	MELO.jh015565.1
Synteny	MELO.jh015565.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGAAAAAGAAAAGAAGAAAAAGGATGAGGATGAGAAGAAAAAGAAAGAAGAGGCAAGAAAGGATGACGAGGTGATAAGAGAGACACAAGACACCACATTAAACATTTTCTCACCTATCGCAAAAATCGAGTTTGAGAGTTTGGCGAAAAAGACCCAAGAGAAGACTAAGAAGGTGAAGTCTAGGCTCTTAAAACTAAAAGTAAAAGCACAACGCGTTAAGGCCTTAGTGGAAGAAAAGGAAGAAGCAAAGAAAAAGGGGCGAGAAGAGCTCCTGAGTAAGGTAGAAAAGGTGGTCCATTCCGCAAAAAAGGACAAGGGCAAGGAGAAGACACATGAAGAGCACTGCGAGGAGTTTGAGAAGGAGATAGAAAATCTATGTCCTTTGGAGAAGGAAGCGCCAAGGCCAAAGAAAAAAAGAAAGGTCACAATGAAAAAGAAGACCTTAAAGATGCAATTTGAAAATAGGCAAGCTGAGAAGGTGAAAAAAAATCTCAAAATAACAAAGGGGAAGAGGGAGAGGAAAGTGACTCAGAAGGACCACTCTCCTCTACCGAAGTTAGTTAACAATTCATGA

mRNA sequence

GAAAGAAAAAGAAAAGAAGAAAAAGGATGAGGATGAGAAGAAAAAGAAAGAAGAGGCAAGAAAGGATGACGAGACCCAAGAGAAGACTAAGAAGGTGAAGTCTAGGCTCTTAAAACTAAAAGTAAAAGCACAACGCGTTAAGGCCTTAGTGGAAGAAAAGGAAGAAGCAAAGAAAAAGGGGCGAGAAGAGCTCCTGAGTAAGGTAGAAAAGGTGGTCCATTCCGCAAAAAAGGACAAGGGCAAGGAGAAGACACATGAAGAGCACTGCGAGGAGTTTGAGAAGGAGATAGAAAATCTATGTCCTTTGGAGAAGGAAGCGCCAAGGCCAAAGAAAAAAAGAAAGGTCACAATGAAAAAGAAGACCTTAAAGATGCAATTTGAAAATAGGCAAGCTGAGAAGGTGAAAAAAAATCTCAAAATAACAAAGGGGAAGAGGGAGAGGAAAGTGACTCAGAAGGACCACTCTCCTCTACCGAAGTTAGTTAACAATTCATGA

Coding sequence (CDS)

ATGAAAAAGAAGACCTTAAAGATGCAATTTGAAAATAGGCAAGCTGAGAAGGTGAAAAAAAATCTCAAAATAACAAAGGGGAAGAGGGAGAGGAAAGTGACTCAGAAGGACCACTCTCCTCTACCGAAGTTAGTTAACAATTCATGA

Protein sequence

MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPKLVNNS

Homology

[Close]

BLAST of MELO.jh015565.1 vs. NCBI nr
Match: KAA0048705.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 5.87e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPKLVNNS 48
           MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPKLVNNS
Sbjct: 164 MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPKLVNNS 211

[Close]

BLAST of MELO.jh015565.1 vs. NCBI nr
Match: TYK15833.1 (protein MNN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 1.07e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1   MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPK 43
           MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPK
Sbjct: 100 MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPK 142

[Close]

BLAST of MELO.jh015565.1 vs. ExPASy TrEMBL
Match: A0A5A7U502 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G00280 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.84e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPKLVNNS 48
           MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPKLVNNS
Sbjct: 164 MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPKLVNNS 211

[Close]

BLAST of MELO.jh015565.1 vs. ExPASy TrEMBL
Match: A0A5D3CVF0 (Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00030 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.18e-17
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 0


Query: 1   MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPK 43
           MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPK
Sbjct: 100 MKKKTLKMQFENRQAEKVKKNLKITKGKRERKVTQKDHSPLPK 142

The following BLAST results are available for this feature:

BLAST of MELO.jh015565.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048705.1	5.87e-20	100.00	protein MNN4-like [Cucumis melo var. makuwa]	[more]
TYK15833.1	1.07e-16	100.00	protein MNN4-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO.jh015565.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh015565.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U502	2.84e-20	100.00	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4358G0...	[more]
A0A5D3CVF0	5.18e-17	100.00	Protein MNN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00...	[more]

BLAST of MELO.jh015565.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh015565.1.t1	MELO.jh015565.1.t1	mRNA